Model 680
Microplate Reader
Instruction Manual
Catalog Numbers |
168-1000 |
|
168-1001 |
|
168-1002 |
|
168-1003 |
Warranty Statement
This warranty may vary outside of the continental United States. Contact your local Bio-Rad office for exact terms of your warranty.
Bio-Rad Laboratories warrants to the customer that the Model 680 Microplate Reader (catalog number 168-1000, 168-1001, 168-1002, and 168-1003) will be free from defects in material and workmanship, and will meet all performance specification for period of one year from the date of shipment. This warranty covers all parts and labor.
In the event that the instrument must be returned to the factory for repair under warranty, the instrument must be packed for return in original packaging.
Bio-Rad shall not be liable for any incidental, special, or consequential loss, damage, or expense directly or indirectly arising from the use of the Model 680 Microplate Reader.
Bio-Rad makes no warranty whatsoever in regard to products or parts furnished by third parties, such being subject to the warranty of their respective manufacturers. Service under this warranty shall be requested by contacting your nearest Bio-Rad office.
The following items are considered Customer-installable consumables: thermal printer paper and light bulbs. These parts are not covered by this warranty. All customer-installed parts are warranted only to be free from defects in workmanship.
This warranty does not extend to any instrument or parts thereof that have been subject to misuse, neglect, or accident, or that have been modified by anyone other than Bio-Rad or that have been used in violation of Bio-Rad instructions.
The foregoing obligation are in lieu of all other obligations and liabilities including negligence and all warranties, of merchantability, fitness for a particular purpose or otherwise, expressed or implied in fact or by law, and state Bio-Rad’s entire and exclusive liability and buyer’s exclusive remedy for any claims or damages in connection with the furnishing of goods or parts, their design, suitability for use, installation or operation. Bio-Rad will in no event be liable for any special, incidental or consequential damages whatsoever, and Bio-Rad’s liability under no circumstances will exceed the contract price for the goods for which liability is claimed.
i
Regulatory Notices
Electro Magnetic Compatibility:
This instrument is designed to meet the Class-A emissions and immunity levels of the EN61326 product family standard for the CE mark. This rating requires that it only be used in a laboratory environment.
Note: This instrument has been tested and found to comply with the limits for a Class A digital device, pursuant to Part 15 of the FCC rules. These limits are designed to provide reasonable protection against harmful interference when the equipment is operated in a commercial environment. This equipment generates, uses, and can radiate radio frequency energy and, if not installed and used in accordance with the instruction manual, may cause harmful interference to radio communications. Operation of equipment in a residential area is likely to cause harmful interference in which case the user will be required to correct the interference at his/her own expense.
Safety:
This instrument is designed to meet EN61010-1 requirements for the CE mark, which are internationally accepted safety standards for electrical equipment for measurement, control and laboratory use. EN61010-1 applies to equipment which is used under the following conditions;
Indoor use
Altitude up to 2,000 m
MAINS supply voltage fluctuations up to ±10%
This instrument has been tested, and its compliance has been confirmed under the following environmental conditions;
Overvoltage category II Pollution degree 2
If the instrument is used in a manner not specified in this manual, the protection provided by the instrument may be impaired. This instrument should not be modified or altered in any way. Alteration of this instrument will result in the following:
Void the manufacture’s warranty. Void regulatory compliance.
Create a potential safety hazard.
Protective Ground: This instrument has detachable, three-wire power cord for connection to both the power source and protective ground. The protective ground contact is connected to the accessible metal parts of the instrument. To prevent electrical shock, always use a power source outlet that has a properly grounded protective-ground contact.
ii
Table of Contents
Section 1. ........ |
Introduction ................................................................................................ |
1 |
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1.1 |
Description and accessories for Model 680 Microplate Reader .......................... |
2 |
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Section 2. ........ |
Product Description ..................................................................................... |
3 |
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2.1 |
Contents of Shipping Carton .......................................................................... |
3 |
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2.2 |
External Features.......................................................................................... |
4 |
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2.3 |
Membrane Keypad ........................................................................................ |
5 |
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Section 3. ........ |
Instrument Set-up ........................................................................................ |
6 |
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3.1 |
Initial Start-up................................................................................................ |
6 |
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Section 4. ........ |
Operation ................................................................................................... |
7 |
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4.1 |
Instrument Overview ..................................................................................... |
7 |
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4.2 |
Functions Overview..................................................................................... |
10 |
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4.2.1 |
Calculations ..................................................................................................... |
10 |
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4.2.2 |
Security password .......................................................................................... |
10 |
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4.2.3 |
Memory Back-up............................................................................................. |
10 |
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4.2.4 |
Limits................................................................................................................. |
11 |
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4.2.5 |
Reports............................................................................................................. |
11 |
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4.2.6 |
RS-232C Interface.......................................................................................... |
16 |
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4.2.7 |
Printer ............................................................................................................... |
17 |
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4.3 |
Detailed Operation ...................................................................................... |
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4.3.1. |
Initial Start-up .................................................................................................. |
18 |
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4.3.2. |
Configuring the system .................................................................................. |
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4.3.3. |
Printing Reports and Protocol information.................................................. |
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4.3.4. |
Memory Recall operation............................................................................... |
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4.3.5. |
Editing Kinetic protocol .................................................................................. |
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4.3.6. |
Checkmark value setting (by Administrator only) ...................................... |
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4.3.7. |
Editing End Point Protocol ............................................................................ |
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4.3.8. |
Cutoff setting procedure ................................................................................ |
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4.3.9. |
Standard setting procedure........................................................................... |
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4.3.10. |
Mode setting procedure................................................................................. |
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4.3.11. |
Plate Map setting procedure......................................................................... |
36 |
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4.4 |
Quick Guide – Reading a plate ..................................................................... |
39 |
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4.5 |
Language choice......................................................................................... |
40 |
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Section 5. ........ |
Instrument service by the user..................................................................... |
42 |
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5.1 |
Installing Interference Filters ........................................................................ |
42 |
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5.2 |
Changing the Lamp ..................................................................................... |
42 |
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Section 6. ........ |
Troubleshooting and Error Messages........................................................... |
43 |
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Section 7. ........ |
Specifications ........................................................................................... |
45 |
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7.1 |
Instrument Specifications ............................................................................. |
45 |
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7.2 |
Interface Specifications................................................................................ |
47 |
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7.3 |
Command Language for Model 680 Microplate Reader .................................. |
48 |
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7.3.1 |
Command Language for Remote control mode ........................................ |
48 |
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7.3.2 |
Error Codes ..................................................................................................... |
63 |
iii
Section 1. Introduction
The Model 680 Microplate Reader is an eight-channel, vertical pathlength photometer that measures the absorbance of the contents in the wells of a 96-well microtitration plates. It can perform single or dual wavelength measurements and can report absorbance values to three decimal places.
The Model 680 reader can be programmed by entering commands through the membrane keypad to define plate reading and data analysis parameters as testing protocols and select report types. Hard copy reports can be produced by an optional on-board thermal printer or external printer.
The Model 680 reader can also be controlled by the Windows’ based Microplate Manager software (catalog number 170-9520) program, through its built-in RS232C serial interface device. Microplate Manager software program provides a complete, user-friendly package for protocol programming as well as data analysis, for all absorbance microplate readers from Bio-Rad Laboratories.
1
1.1Description and accessories for Model 680 Microplate Reader
Catalog Number |
Description |
168-1000 |
Model 680 microplate reader |
168-1001 |
Model 680 microplate reader with temperature control |
168-1002 |
Model 680 microplate reader with internal printer |
168-1003 |
Model 680 microplate reader with temperature control and internal |
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printer |
168-1011 |
405 nm filter |
168-1013 |
415 nm filter |
168-1020 |
450 nm filter |
168-1028 |
490 nm filter |
168-1038 |
540 nm filter |
168-1040 |
550 nm filter |
168-1044 |
570 nm filter |
168-1049 |
595 nm filter |
168-1056 |
630 nm filter |
168-1061 |
655 nm filter |
168-1080 |
750 nm filter |
168-1005 |
Serial PC Cable |
168-1006 |
Replacement lamp for Model 680 microplate reader |
168-1007 |
Printer paper, 2 rolls |
Custom filters between 400 and 750 nm may be ordered, corresponding catalog numbers can be found on www.bio-rad.com, or you can order by specifying the wavelength and the model number of the reader.
2
Section 2. Product Description
2.1Contents of Shipping Carton
The shipping carton contains the following items:
•Model 680 Microplate Reader, with 415nm, 450nm, 490nm and 655nm interference filters installed on the filter wheel.
•Power cord
•Serial PC Cable
•Spare fuse
•Dust cover
•Instruction manual
•Warranty card
•One roll of thermal printer paper (for units equipped with internal printer)
Inspect the exterior of the instrument for any signs of shipping damage. Contact your local Bio-Rad representative if any of these items are damaged or missing.
3
2.2External Features
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1. Release latch for rear cover |
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Liquid crystal display (LCD) |
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Printer slot (when optional built-in printer is installed) |
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Membrane keypad |
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Reading chamber door |
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RS-232C serial interface |
11. Printer port (only when optional built-in printer is not installed) |
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Serial number Label |
12. |
Power cord receptacle |
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Fuse |
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Cooling Fan |
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10. Power switch |
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Cooling Vents |
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2.3Membrane Keypad
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Memory |
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Recall |
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P aper |
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Feed |
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1. Main |
Returns to MAIN SCREEN. |
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Start/Stop |
Initiates plate reading using current active protocol. |
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Stops plate reading and printing. |
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Paper Feed |
Advances paper strip in internal printer. |
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4. Up Arrow |
Moves the cursor upward. |
Selects the alphabet or the symbol. |
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Left Arrow |
Returns to the previous screen. Moves the cursor to the left. |
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6. Down Arrow |
Moves the cursor downward. |
Selects the alphabet or the symbol. |
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Right Arrow |
Moves the cursor to the right. |
Changes or selects the value and type. |
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Dot/Function |
Inputs the dot. |
Changes the input mode. |
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9. |
Enter |
Completes or seals a field entry. |
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10. Ten Keys |
Inputs numbers or well type in plate mapping. |
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/ EMP : Empty |
5 / QC |
: QC control |
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/ SMP : Sample |
6 / CAL |
: Calibrator |
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/ BLK |
: Blank |
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7 / CP |
: Positive Control |
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/ STD |
: Standard |
8 / CN |
: Negative Control |
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/ CO |
: Cutoff control |
9 / CW |
: Weak Positive Control |
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11. |
Prints out the plate data and protocol information. |
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12. Edit |
Enter the Edit Menu, and set up the instrument. |
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13. Memory Recall |
Read out protocol and plate data. |
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5
Section 3. Instrument Set-up
3.1Initial Start-up
1Place the instrument on a clean, sturdy table or bench. It is important to keep the instrument in a clean, relatively dust free environment to ensure optimal performance.
2Connect the power cord to the back of the instrument. Before connecting the instrument to the main electrical supply, check that the AC voltage is appropriate for the instrument.
3Turn on the power switch on the rear panel. The LCD will display the version number of the on-board firmware. After about three seconds, the instrument will perform an initial self-diagnosis that requires about fifteen seconds. The Login Screen will now be displayed for you to choose your user level (administrator or common user), and enter the password (Initial password: 00000). Please allow three minutes for the instrument to warm up (reach thermal equilibrium) before reading plates.
4Install the printer paper (if the optional internal printer is installed). The thermal printer paper is treated on one side only and must be properly installed for the printer to function. The side of the paper that faces out from the roll is the treated side.
a.Open the rear cover of the instrument.
b.Tear off a small piece at the beginning of a new roll at an angle to form a point.
c.Place the roll of paper in the small pan-like holder positioned below the printer.
The roll should be positioned so that it will feed from the bottom.
d.While pressing the PAPER FEED key, feed the pointed end of the paper into the paper feed slot in the underside of the printer until the printer grabs the paper and feeds it through the slot in the top of the instrument.
e.Securely close the rear compartment.
6
Section 4. Operation
4.1Instrument Overview
The Model 680 Microplate Reader has built-in software that allows the user to set the plate reading and data analysis conditions as a protocol data, read a microplate under the defined reading conditions, and get the printout reports from the internal or external printer. The software communicates through the 4-line, 20-character LCD and is controlled through the instrument's membrane keypad.
The display shows the current mode of the on-board software. The software has three different protocol types: End-point analysis, Kinetic analysis, and the Checkmark validation protocols. The user presses the Memory Recall key to select analysis mode passing through the choice of the protocol or the collected data.
7
Operation flow when End point protocol selected
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Constant |
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Ranged Cutoff |
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Cutoff Values setting |
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Single Cutoff |
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Gray zone setting when single Cutoff |
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Control |
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Ranged Cutoff |
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Cutoff Control setting |
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Cutoff |
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Single Cutoff |
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Gray zone setting when single Cutoff |
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Formula |
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12 choices of |
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Coefficient setting of selected formula |
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cutoff formula |
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0 - 9999 |
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Ratio |
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Concentration |
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17 choices of unit |
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Unit |
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Cutoff value |
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Ranged |
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Cutoff Values setting |
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Cutoff |
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Gray zone setting when single Cutoff |
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Single |
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Cutoff |
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Report |
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Raw(Raw data), Abs(Absorbance), Lim(Limit), Mtx(Matrix), Cut(Cutoff) |
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Crv(Curve fit), Cnc(Concentration), Dif(Difference) |
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Upper Limit |
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Up to 12 Standards |
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Protocol |
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Limit |
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Number of STD |
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Lower Limit |
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Concentration |
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0 to 9999 |
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For Limit Report |
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Unit |
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17 choices |
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12 choices of curve fit type |
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Standard information |
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Curvefit type |
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Graph axis |
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4 choices of graph axis |
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STDs |
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Curvefit |
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combination of Log and Linear |
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Recall STD Curve |
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Recall Yes/No Selection |
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Select STD Curve |
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5 choices of memorized STD |
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curve |
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Mode |
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Set Shaking |
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Shake (Yes, No), Speed (High, Low, Mid), Time |
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Set Read mode |
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Incubation |
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.Func key to switch [N] to [F] |
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Manual mapping |
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Mapping |
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Automatic mapping |
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[N] for sample number, [F] for sample type |
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Blank,CN,CW,CP,CO,QC,Calibrator,Sample,Replicate well |
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Kit name |
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.Func key to switch from [ABC] to [abc] to [sym] |
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key to move cursor |
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For current user mode |
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Change password |
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Security |
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Change user |
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Administrator or Common user |
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Lock/Unlock |
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Administrator has power to switch |
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Filters |
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Filter wavelength setting for 1-8 positions, “0” for no filter |
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Date Set |
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Day/Month/Year, Hour:Min |
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Lab name |
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.Func key to switch from [ABC] to [abc] to [sym] |
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key to move cursor |
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5 choices of storage number |
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SaveSTDC |
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Save STD Curve |
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Rename STD Curve |
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5 choices of STD |
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.Func key to switch from [ABC] to [abc] to [sym] |
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curve |
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key to move cursor |
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Printer |
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Select Ext.Printer |
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ASCII / ESC/P Printer Selection for external printer |
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ASCII / ESC/P |
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Italic for program pages |
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Bold |
for menu |
8
Operation flow when Kinetic protocol selected
Edit
Protocol
Security
Filters
Date Set
Lab Name
SaveSTDC
Printer
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Reading |
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Number of reads (2-30), Start delay time (0-999) |
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Inter |
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Reading interval time |
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Mode |
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Shaking |
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Shake (First/Every/disable), Speed (High, Low, Mid), Time |
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Ph.mode |
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Single / Dual Wavelength |
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Speed |
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Read Speed (Fast/Step) |
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Incu |
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Disable/Enable Temperature |
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CC Limit (correlation coefficient limit) |
GALT factor k input (0- 9999) |
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Calc |
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Calc.range (calculation range of reading number) |
Result = (2nd read – 1st read)*k |
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for Linear regression Report |
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for GALT Report |
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.Func key to switch [N] to [F] |
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Mapping |
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Manual mapping |
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Automatic mapping |
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[N] for sample number, [F] for sample type |
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Blank,CN,CW,CP,CO,QC,Calibrator,Sample,Replicate well |
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Assay |
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General Kinetic or GALT assay |
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assay type selection |
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Report |
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Absorbance, KINETIC Plots, Linear regression when General Kinetic Assay selected |
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GALT report when GALT Kinetic assay selected |
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Kit name |
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.Func key to switch from [ABC] to [abc] to [sym] |
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key to move cursor |
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Change password For current user mode
Change user Administrator or Common user
Lock/Unlock Administrator has power to switch
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Filter wavelength setting for 1-8 positions, “0” for no filter |
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Day/Month/Year, Hour:Min |
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key to move cursor |
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5 choices of storage number |
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Save STD Curve |
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Rename STD Curve |
5 choices of STD |
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curve |
key to move cursor |
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Select Ext.Printer |
ASCII / ESC/P Printer Selection for external printer |
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ASCII / ESC/P |
Special Buttons
Memory |
Protocol |
End point |
1-64 End point protocol storage |
Recall |
Plate Data |
Kinetic |
1-2 Kinetic protocol storage |
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Checkmark |
Checkmark reader test |
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Report |
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Printout |
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Protocol |
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Main |
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Returns to MAIN screen |
Bold for menu Italic for program pages
9
4.2Functions Overview
4.2.1Calculations
The Microplate Reader uses Beer's Law to calculate the absorbance value of each well. Beer's Law states that absorbance is equal to the log10 of the ratio of the baseline measurement intensity (Io) to the sample measurement intensity (I).
Beer's Law
Absorbance = Log10 (Io/I)
Before measuring the plate, the reader takes a reading for all eight photodiode channels. These values are recorded as the baseline measurement (Io) values for each channel, respectively. The reader then records the sample measurement (I) value for each well, and calculates the absorbance using these values. Channel-to-channel error is significantly reduced because the Io value for a given channel is used only in determining the absorbance of the wells of that channel.
4.2.2Security password
The Model 680 Microplate Reader requires user login with password. This security feature helps to prevent any unwarranted modifications to the analysis conditions/protocols and data stored in the instrument, and identifies operator on reports. The reader has two user settings, the Administrator and the Common user. Each user level has its own security password.
4.2.3Memory Back-up
The battery back-up provides memory even after the reader is turned off.
The following information will be saved in the memory until new reading parameters are set by the user or a new plate is read by the instrument. Note that if a run is aborted before it is finished, all the previous plate reading data remain in memory and none of the data from the aborted reading is stored.
1.10 latest plate reading result for End-point protocol
2.2 latest sets of Kinetic plate reading result (Max 30 series of readings for each
Kinetic)
3.64 End-point Protocol settings and 2 Kinetic Protocol settings
4.A set of Checkmark reference data and one latest set of Checkmark reading result
5.5 set of Standard curve data for the storage of standard curves and graphs
6.8 wavelength values for filters
7.Laboratory name
8.Two security passwords (for the Administrator and the Common user)
9.External printer type (ASCII or ESC/P type)
In addition to the battery back-up memory, the instrument has a small amount of none volatile memory to keep the system information after the battery is dead. The Serial Number is stored
10
in this memory.
The first time the instrument is turned on, or after a battery failure, the following default information will be held in the memory.
1.Both of Administrator and Common user security password are set to "00000".
2.Laboratory name is "Bio-Rad Laboratories".
3.All wavelength values of the filters are set to "---" nm.
4.The date and time of the calendar chip are set to 1 day, 1 month, 00 year, 0 hour and 0 minute.
5.None of plate reading data is available.
6.End-point protocol is chosen and the protocol number is set to #1.
7.None of Standard curve data for the storage of standard curves and graphs is available.
8.External printer type is set to ASCII type.
4.2.4Limits
The Microplate Reader displays absorbance readings with absolute values as 3.500.
Out-of-range absorbance values, i.e. those with absolute values greater than 3.500, are displayed as either "*.***" or "-*.***". For example, if the absorbance is 4.500, then the display will read "*.***", and if the absorbance is -4.500, the display will read "-*.***".
4.2.5Reports
The Microplate Reader can generate nine types of reports for End-point protocol: Raw data,
Absorbance, Limit, Matrix, Cutoff, Curve fit, Concentration, Difference, and TeSeE Screening report. And four types of Kinetic protocol can be generated by the reader: Absorbance, Kinetic Plots, Linear regression, and GALT report.
Reports of End-point Protocol
(1)Raw data report
The Raw data report is the uncorrected absorbance values (without blank subtraction). In single-wavelength mode, the reported value is the measured absorbance. In dual-wavelength mode, the reported value is the difference between the uncorrected readings taken with the measurement filter and with the reference filter.
(2)Absorbance report
The Absorbance report is the blank-corrected absorbance values. The mean absorbance value of all of the wells designated as assay blanks is calculated and then subtracted from all 96 values of the raw data set to produce the Absorbance report.
Abs = Raw – Blank mean
11
Blank mean = X/n
S.D. = [{X^2 – n*(Blank mean)^2}/{n-1}]^1/2 Where:
S.D. = Standard deviation
X = Sum total of the raw absorbance for each blank
X^2 = Sum total of the squared raw absorbance for each blank n = Number of blanks
(3)Limit report
The Limit report provides a qualitative YES/NO report. Wells with blank-subtracted absorbance values between the upper and lower limits are represented with an asterisk (*), wells with absorbance values below the lower limit by minus signs (-), and wells with absorbance values greater than the upper limit by positive signs (+).
(4)Matrix report
The Matrix report provides a qualitative report of the relative magnitude of the absorbance values on the plate. The absorbance range defined by the upper and lower limits is divided into 10 equal partitions, numbered 0 through 9. The blank-subtracted absorbance value of each well is classified according to the partition of the matrix to which it corresponds, and is reported as a signal digit. Wells with absorbance values greater than the upper limit are reported by plus signs (+), and wells with absorbance values less than the lower limit by minus signs (-).
(5)Cutoff report
The Cutoff report provides a qualitative report of the relative magnitude of the absorbance values or converted concentrations on the plate.
Four types of cutoff report are supported as listed below.
a. Cutoff Constant
Ranged Cutoff Constant
The user inputs Positive and Negative values to be used as the cutoff.
For units designated "Abs", if the absorbance of a well is within the positive and negative cutoff values, the well is scored "*". If the absorbance of a well is greater than the positive value, the well is scored "+", and if the absorbance of a well is below the negative value, the well is scored "-".
For units not designated "Abs", the absorbance value of each well is converted to the concentration value using the curve fit constants of the curve fit report. If the concentration of a well is within the positive and negative cutoff values, the well is scored "*". If the concentration of a well is greater than the positive value, the well is scored "+", and if the concentration of a well is below the negative value, the well is scored "-".
Single Cutoff Constant
The user inputs Positive and Gray zone values to be used as the cutoff.
For units designated "Abs", if the absorbance of a well is within the gray zone value of the positive cutoff value, the well is scored "*". If the absorbance of a well is more than the gray zone value and greater than the positive value, the well is scored "+", and if the absorbance of a well is more than the gray zone value below the positive value, the well is scored "-".
12
Upper cutoff absorbance = Positive absorbance + ((Gray zone/100) * Positive absorbance) Lower cutoff absorbance = Positive absorbance – ((Gray zone/100) * Positive absorbance)
For units not designated "Abs", the absorbance value of each well is converted to the concentration value using the curve fit constants of the curve fit report. If the concentration of a well is within the gray zone value of the positive cutoff value, the well is scored "*". If the concentration of a well is more than the gray zone value greater than the positive value, the well is scored "+", and if the concentration of a well is more than the gray zone value below the positive value, the well is scored "-".
Upper cutoff conc. = Conc. of positive controls + ((Gray zone/100) * Conc. of positive controls) Lower cutoff conc. = Conc. of positive controls - ((Gray zone/100) * Conc. of positive controls)
b. Cutoff Control Ranged Cutoff Control
The mean absorbance values of the Positive and Negative wells defined in the plate map are used for the cutoff.
The absorbance range of the Positive and Negative is divided into 10 equal partitions, numbered 0 through 9. The absorbance value of each well is classified according to the partition of the matrix to which it corresponds, and is reported as a signal digit. Wells with absorbance values greater than the Positive are reported by plus signs (+), and wells with absorbance values less than the Negative by minus signs (-).
Single Cutoff Control
The mean absorbance value of the Negative wells that defined in the plate map and the gray zone value that is entered by the user are used to the cutoff. The upper and lower cutoff values are:
Upper cutoff absorbance = Mean of negative controls + ((Gray zone/100) * Mean of negative controls) Lower cutoff absorbance = Mean of negative controls – ((Gray zone/100) * Mean of negative controls)
The absorbance range of the upper and lower cutoff is divided into 10 equal partitions, numbered 0 through 9. The absorbance value of each well is classified according to the partition of the matrix to which it corresponds, and is reported as a signal digit. Wells with absorbance values greater than the upper cutoff are reported by plus signs (+), and wells with absorbance values less than the lower cutoff by minus signs (-).
c. Cutoff Formula
The mean absorbance values of the Positive and Negative wells defined in the plate map are used for the cutoff formula calculation.
The 12 types of formula supported are:
i. |
k * CNx |
vii. |
k + CNx |
ii. |
k * CPx |
viii. |
k + CPx |
iii. |
k * COx |
ix. |
k + COx |
iv. |
CNx / k |
x. |
k*CNx + CPx |
v. |
CPx / k |
xi. |
(CNx + CPx) / k |
vi. |
COx / k |
xii. |
k1*CNx + k2*CPx |
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13 |
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The result absorbance value of the formula calculation and the gray zone value that is entered by the user are used for the cutoff. The upper and lower cutoff values are:
Upper cutoff absorbance = Result of a Formula + ((Gray zone/100) * Result of a Formula) Lower cutoff absorbance = Result of a Formula - ((Gray zone/100) * Result of a Formula)
The absorbance range of the upper and lower cutoff is divided into 10 equal partitions, numbered 0 through 9. The absorbance value of each well is classified according to the partition of the matrix to which it corresponds and is reported as a signal digit. Wells with absorbance values greater than the upper cutoff are reported by plus signs (+), and wells with absorbance values less than the lower cutoff by minus signs (-).
d. Cutoff Ratio
The mean absorbance value of the Calibrator wells defined in the plate map and the concentration value entered by the user are used for the cutoff ratio. Before the cutoff, the absorbance value of each well is converted into the concentration value. The ratio of Concentration/Absorbance of Calibrator is applied to the conversion. Then, the cutoff is done with the defined Positive and Negative or the defined Positive and Gray zone values.
Ranged Cutoff Control
The concentration range of the Positive and Negative is divided into 10 equal partitions, numbered 0 through 9. The concentration value of each well is classified according to the partition of the matrix to which it corresponds, and is reported as a signal digit. Wells with concentration greater than the Positive are reported by plus signs (+), and wells with concentration less than the Negative by minus signs (-).
Single Cutoff Control
The concentration value of the Negative and the gray zone value entered by the user are used for the cutoff. The upper and lower cutoff values are:
Upper cutoff concentration = Positive + ((Gray zone/100) * Positive)
Lower cutoff concentration = Positive - ((Gray zone/100) * Positive)
The concentration range of the upper and lower cutoff is divided into 10 equal partitions, numbered 0 through 9. The concentration value of each well is classified according to the partition of the matrix to which it corresponds, and is reported as a signal digit. Wells with concentrations greater than the upper cutoff are reported by plus signs (+), and wells with concentrations less than the lower cutoff by minus signs (-).
(6)Curve fit report
The Curve fit report provides a regression analysis based on the absorbance values of a series of standards. There are ten types of curve fits supported with the onboard software on Model 680 microplate readers:
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i.5P Logistic Rodbard
ii.4P Logistic Rodbard
iii.5P Logistic Cook-Wilkenson
iv.4P Logistic Cook-Wilkenson
v.5P Exponential
vi.Sigmoid Logistic
vii.Linear regression
viii.Quadratic regression
ix.Cubic spline
x.Point To Point regression
The onboard software calculates the best fit of the defined curve between each set of two consecutive data points in the standard curve of absorbance vs. concentration. And then it generates the report with the coefficients of regression, the correlation coefficient, and the standard error.
For readers with the optional internal printer or with an external ESC/P printer which accepts ESC/P code, a graph of the standard curve may be generated when selected in the report parameter.
(7)Concentration report
In case of the curve fit, the Concentration report also provides the regression analysis. After the calculation of the curve fit, it calculates the concentrations values of the samples, and generates the report.
In case of the cutoff constant with the unit not designated "Abs" and in case of the cutoff ratio, the reader generates the list of concentration of each well.
(8)Difference report
The Difference report is the subtraction report between the neighboring columns or row.
(9)TeSeE Screening report
Analysis of the TeSeE screening assay results can be done with two pre-programmed protocols: “TeSeE” protocol is stored in Endpoint Protocol position #5 and “TeSeE eq” is stored in Endpoint Protocol position #6 as factory default setting. Both protocols are locked.
TeSeE screening report is generated only if these protocols are selected as current active protocol. Plate is first validated according to negative and positive controls validation criteria; samples are then compared to the calculated cut-off.
Criteria for plate validation are set as follow:
Criteria #1: |
Individual Negative Control must be < 0.150 |
|
Number of valid Negative Control must be >= 3 |
Criteria #2: |
Individual Negative Control must be < 1.400 * Negative Control average |
|
Number of valid Negative Control must be >= 2 |
Criteria #3: |
Positive Control average must be >= 1.000 |
Cutoff is calculated as follow:
TeSeE:
Positive cutoff = Negative Control average + 0.210
Negative cutoff = (Negative Control average + 0.210) * 0.900
TeSeE eq:
Positive cutoff = Negative Control average + 0.210
Negative cutoff = Negative Control average + 0.090
Samples are interpreted as follow:
“POS”: |
Positive when sample OD >= Positive cutoff |
“NEG”: |
Negative when sample OD < Negative cutoff |
“???”: |
Gray zone: NEG cutoff =< sample OD < POS cutoff |
Reports of Kinetic Protocol
(1)Absorbance report
The Kinetic Absorbance report is the series of absorbance data in the kinetic sequence.
(2)Kinetic Plots
The Kinetic plots are the absorbance plots of each well in the plate. It is available for readers with the optional internal printer or with an external ESC/P printer which accepts ESC/P code.
(3)Linear Regression report
The Linear Regression report provides the calculation of Kinetic reaction rate for each well using the linear regression.
(4)GALT report
The GALT report calculates the following formula for each well between two readings of a plate.
GALT = (R2 – R1) * k
Where: R1 = Absorbance value of 1st reading R2 = Absorbance value of 2nd reading k = GALT factor
4.2.6RS-232C Interface
The Model 680 Microplate Reader has a built-in bi-directional RS-232C interface (9 pin D-sub connector, Bio-Rad catalog number: 168-1005). This allows external computers to control the instrument. When an external computer is in control of the microplate reader, the printer and the membrane keys, except for the "Start/Stop" key, are automatically deactivated and the LCD display as below.
Remote mode
The reader will remain in remote control mode until it receives "RL" command from the host computer or until the "Start/Stop" key on the microplate reader is pressed.
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4.2.7Printer
The Model 680 Microplate Reader has a built-in printer interface connector (25 pin D-sub) or an optional factory built-in printer.
The printer interface connector allows the user to connect an external printer for the printout of reports or protocol. This external printer interface is based upon Centronics interface standards.
Two types of printer, ASCII type and ESC/P type, are allowable to connect. The ASCII type printer can only accept ASCII character based codes which does not include any graphic codes. Next, the ESC/P type printer can accept ESC/P codes which include graphic codes.
The optional factory built-in internal printer and the external ESC/P type printer can generate all types of report including graphs and kinetic plots.
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