Always keep this manual with the instrument.
Read carefully before working with the instrument.
Leica CM3600 XP
Cryomacrotome
NOTE
The information, numerical data, notes and value
judgments contained in this manual represent the
current state of scientific knowledge and stateof-the-art technology as we understand it following thorough investigation in this field. We are
under no obligation to update the present manual
periodically and on an ongoing basis according
to the latest technical developments, nor to provide our customers with additional copies, updates etc. of this manual.
To the extent permitted in accordance with the
national legal system as applicable in each individual case, we shall not be held liable for erroneous statements, drawings, technical illustrations etc. contained in this manual. In particular,
no liability whatsoever is accepted for any financial loss or consequential damage caused by or
related to compliance with statements or other
information in this manual.
Statements, drawings, illustrations and other
information as regards contents or technical
details of the present manual are not to be
considered as warranted characteristics of our
products. These are determined only by the contract provisions agreed between ourselves and
our customers.
Leica reserves the right to change technical
specifications as well as manufacturing processes without prior notice. Only in this way is it
possible to continuously improve the technology
and manufacturing techniques used in our products.
This document is protected under copyright laws.
All copyrights to this documentation are held by
Leica Biosystems Nussloch GmbH.
Any reproduction of text and illustrations (or of
any parts thereof) by means of print, photocopy,
microfiche, web cam or other methods – including any electronic systems and media – requires
express prior permission in writing by Leica
Biosystems Nussloch GmbH.
For the instrument serial number and year of
manufacture, please refer to the name plate at
the back of the instrument.
1. Important Information ........................................................................................................ 8
1.1 Symbols in the text and their meanings .......................................................................................................................... 8
1.2 Qualification of personnel .................................................................................................................................................. 8
1.4 Designated use ..................................................................................................................................................................... 9
1.6 Service information ........................................................................................................................................................... 10
1.7 Decommissioning and disposal ...................................................................................................................................... 10
2. Characteristics of the Leica CM3600 XP ...................................................................... 12
2.1 Layout of the CM3600 XP .................................................................................................................................................. 12
2.2 Technical Data ................................................................................................................................................................... 14
2.2.1 Microtome type ...................................................................................................................................................... 14
2.2.2 Control unit......................................................................................................................................................... 14
2.2.3 Dimensions and weight ........................................................................................................................................ 15
2.2.5 Refrigeration system - cooling chamber .......................................................................................................... 16
2.2.6 General parameters .............................................................................................................................................. 17
2.3 Instrument parts ................................................................................................................................................................. 17
4. Site requirements .............................................................................................................26
4.1 Site requirements at place of installation ..................................................................................................................... 26
4.3 Other connections ............................................................................................................................................................. 27
5.1 Unpacking and installation .............................................................................................................................................. 28
5.2 Standard delivery ............................................................................................................................................................... 28
5.3 Port and switch panel ....................................................................................................................................................... 29
5.3.1 Port and switch functions .................................................................................................................................... 30
5.4 PC .......................................................................................................................................................................................... 33
6.1 Start and log-in procedure............................................................................................................................................... 34
6.2 Description of the window elements ............................................................................................................................. 35
6.2.1 Title bar......................................................................................................................................................... 35
6.2.3 Work space ......................................................................................................................................................... 37
6.2.4 Information bar ....................................................................................................................................................... 37
6.4 Main window ...................................................................................................................................................................... 40
6.4.1 Chamber temperature .......................................................................................................................................... 41
6.4.5 Knife movement ..................................................................................................................................................... 42
6.4.6 Extraction system .................................................................................................................................................. 45
6.4.7 Sectioning program .............................................................................................................................................. 45
6.5.2 Password list ......................................................................................................................................................... 54
6.5.5 Language selection ............................................................................................................................................... 64
6.6 Temperature curves .......................................................................................................................................................... 65
6.6.1 Work space......................................................................................................................................................... 66
6.7 Chronological event list .................................................................................................................................................... 69
6.7.1 Work space......................................................................................................................................................... 70
6.8 Alarm list .............................................................................................................................................................................. 73
6.8.1 Work space ......................................................................................................................................................... 74
6.8.3 Error codes: meaning and troubleshooting ..................................................................................................... 76
6.10.1 Tree diagram ......................................................................................................................................................... 78
6.14 Help ....................................................................................................................................................................................... 86
7.2 Switching the instrument on ............................................................................................................................................ 89
7.3 Starting the software......................................................................................................................................................... 89
7.4 Setting the chamber temperature .................................................................................................................................. 89
9.1 Ordering information ....................................................................................................................................................... 112
6
Instructions for use, 6v3, RevB – 01/2013
Leica CM3600 XP – Cryomacrotome
7
1.Important Information
1.1Symbols in the text and their
meanings
Warnings
appear in a gray box and are marked
by a warning triangle.
Useful tips,
i.e. important information for the user,
appear in gray boxes and are marked
by an informationsymbol.
ENTER
(5)
Buttons and function keys which need
to be pushed on the data entry screen,
are printed in bold capitals.
Numbers in parentheses refer to item
numbers in illustrations.
1.2Qualification of personnel
1.3Instrument type
All information contained in this Instructions for
use applies exclusively to the instrument type
indicated on the title page.
Caution!
This Instructions for use is valid ONLY
for the instrument with Prod. No.
0163/08.2010
Refer to the nameplate attached to
the rear side of the instrument.
Only trained laboratory personnel may operate the
Leica CM3600 XP.
All laboratory personnel designated to operate the
Leica instrument must read this Instructions for
use carefully and must be familiar with all technical features of the instrument before attempting
to operate it.
8
Instructions for use, 6v3, RevB – 01/2013
1.4Designated use
1.Important Information
The Leica CM3600 XP is a PLC-controlled and motorized precision
cryomacrotome for large-surface sections, equipped with a convectioncooled cryochamber for deep-freezing, sectioning, storing and freezedrying large biological and industrial specimens.
The instrument is designed for the above described applications only and
must be operated according to the instructions in the present Instructions
for use.
Any use of the instrument not described in this Instructions for
use is considered improper.
If you wish to use the instrument for special applications or modes of
operation not listed in this manual, it is absolutely necessary that you
contact your local Leica representation prior to doing so.
Otherwise, you will loose the Leica warranty on your instrument.
Only trained personnel, skilled in the use of the above-mentioned applications, may operate the Leica CM3600 XP.
Prior to operating the instrument, the operator must thoroughly read and
understand this Instructions for use.
Leica CM3600 XP – Cryomacrotome
9
1.Important Information
1.5Warranty
Leica Biosystems Nussloch GmbH guarantees that the contractual product
delivered has been subjected to a comprehensive quality control procedure based on the Leica in-house testing standards, and that the product is
faultless and complies with all technical specifications and/or agreed characteristics warranted.
The scope of the warranty is based on the content of the concluded agreement. The warranty terms of your Leica sales organization or the organization from which you have purchased the contractual product shall apply
exclusively.
1.6Service information
If you require technical service or replacement parts, please contact your
Leica sales representative or Leica dealer who sold the product.
Please provide the following information:
•Model name and serial number of the instrument
•Location of the instrument and name of the person to contact
•Reason for the service call
•Date of delivery
1.7Decommissioning and disposal
The instrument or parts of the instrument must be disposed of according to
existing applicable, local regulations.
10
Instructions for use, 6v3, RevB – 01/2013
1.Important Information
Leica CM3600 XP – Cryomacrotome
11
2.Characteristics of the Leica CM3600 XP
2.1Layout of the CM3600 XP
PC
Port and
switch panel
Refrigeration
and control unit
Microtome
(in chamber)
WindowChamber lidEmergency stop switch
Drain valve for
condensation
water
Cryochamber
Knee lever
12
Instructions for use, 6v3, RevB – 01/2013
2.Characteristics of the Leica CM3600 XP
Drain valve
Condensation water is drained through the drain valve. The tray at the
drain valve must remain at the instrument at all times and must be emptied regularly.
Refrigeration and control unit
The refrigeration and control unit cools the cryochamber and controls the
microtome and the entire electronics.
Knee lever
The knee lever is used for manual operation of the specimen sledge.
PC
Commercial PC, monitor, keyboard, mouse and internal modem.
Emergency stop switch
Press the emergency stop switch to stop the microtome immediately.
Cryochamber cabinet
The cryochamber cabinet contains the cryochamber which houses the
microtome.
Chamber lid
The chamber lid can be opened completely for maintenance and cleaning
work on microtome and/or cryochamber.
Window
The window is heated and can be opened completely.
Microtome
The microtome is used to section the specimens.
Port and switch panel
The port and switch panel contains the mains switch and several sockets
and ports.
Leica CM3600 XP – Cryomacrotome
13
2.Characteristics of the Leica CM3600 XP
2.2Technical Data
2.2.1 Microtome type
450 C Sliding microtome
Section thickness selection:1 - 200 μm
Sectioning range:0 - 450 mm
Max. sectioning speed:80mm/s
Knife retraction after sectioning stroke:50 - 250μm
Total vertical stroke of knife:70mm (standard)
Total vertical stroke of knife:100mm (version with
Total horizontal stroke:450mm
Specimen orientation via ball-joint:ca. 5° (x/y/z axis)
Specimen orientation w/large spec. stage
Maximum specimen size (L x W x H):450 x 150 x 70mm
Maximum specimen size (L x W x H):450 x 150 x 200mm
Knife holder for steel and
tungsten carbide knives:160mm
Knife holder for disposable blade holder:160 mm
Knife (160 mm) with facet angle of:20°, 35°
extended vertical stroke)
(450 x 150mm)
Rotation around
longitudinal axis (x-axis)
(standard)
(version with extended
stroke)
2.2.2 Control unit
14
The Leica CM3600 XP is equipped with a commercial PC, monitor,
keyboard, mouse and an internal modem. For further information,
please refer to the manual of the PC.
Operating system: XP.
Software: CM3600 XP Version 3.2.2.
Instructions for use, 6v3, RevB – 01/2013
2.2.3 Dimensions and weight
Inner (cryochamber L x H x W):1650 x 720 x 600mm
Outer (L x H x W):2800 x 1090 x 920mm
Total dimensions with connecting lines:
Outer length (total):2800 mm
Outer length (chamber only):1940 mm
Outer length (control unit only):860 mm
Outer height (total):1090 mm
Outer height (work surface height):1050 mm
Outer width:920 mm
Weight (total, incl. microtome):660 kg
Weight (microtome only):190 kg
2.2.4 Electrical connections
380 V / 50 Hz, three-phase
Nominal voltage:380V AC ± 10 %
Nominal frequency:50 Hz
Line voltage tolerance:± 10 %
Power draw:2400VA
Circuit breaker/3 x 8A / 1 x 10A
Power safety switchto DIN IEC 127-2
2.Characteristics of the Leica CM3600 XP
208 V / 60 Hz, two-phase
Nominal voltage:208 V AC
Nominal frequency:60 Hz
Line voltage tolerance:± 10 %
Power draw:2400VA
Automatic cutout/2 x 8A / 1 x 16A
Power safety switchUL-listed
200 V / 50 Hz, two-phase
Nominal voltage:200 V AC
Nominal frequency:50 Hz
Line voltage tolerance:± 10 %
Power draw:2400VA
Automatic cutout/2 x 8A / 1 x 16A
Power safety switchUL-listed
Leica CM3600 XP – Cryomacrotome
15
2.Characteristics of the Leica CM3600 XP
200 V / 60 Hz, two-phase
Nominal voltage:200 V AC
Nominal frequency:60 Hz
Line voltage tolerance:± 10 %
Power draw:2400 VA
Automatic cutout/2 x 8A / 1 x 16A
Power safety switchUL-listed
220 V / 60 Hz, two-phase
Nominal voltage:220 V AC
Nominal frequency:60 Hz
Line voltage tolerance:± 10 %
Power draw:2400 VA
Automatic cutout/2 x 8A / 1 x 16A
Power safety switchUL-listed
2.2.5 Refrigeration system - cooling chamber
16
Selectable temperature range:0° C to -30 °C
at an ambient temperature
of 22°C, closed window
and humidity ≤ 60%:-30°C ±10 % (adjustable
in 1 K increments)
Control accuracy:+1 to -3 K
Electrical power draw:1160 W
Refrigerating output at -25°C:1370 W
Nominal pressure:20bar (maximum value)
Cutoff pressure:25bar (via Pressostat)
Safety factor:2, as per UL 1262
Refrigerant:1100g, refrigerant R404A
Compressor oil:1220 ccm alpha 22, Kyodo
Defrost:Automatic hot gas defrost, programmable,
2 x automatic hot gas defrost / 24 hours.
Duration: 1 - 15 minutes, manual defrosting as needed.
A-weighted noise level:78.5 dB (A)
Distance between sound meter and instrument:1 meter
Measuring uncertainty:±1.5 dB (A)
Instrument settings at measurement:Normal instrument
operation with
extraction
The user must wear hearing protection when using the
extraction.
The Leica CM3600 XP consists of a sliding microtome in a large-volume
cryochamber. The instrument is designed for cryosectioning large specimens or for processing specimens with the so-called cryo-planing
technique.
The large-scale heavy-duty microtome is made for sectioning large
biomedical and industrial specimens such as whole animals or large
tissue specimens by applying the sectioning techniques for large-surface
sections. The sturdy construction of the instrument also permits sectioning very hard specimens such as undecalcified bones.
The microtome is housed in a convection-cooled large-volume
cryochamber. The large chamber in connection with the special cooling
system enables dehydration of sections within a very short time.
The low temperatures are achieved and maintained by cold air circulating inside the cryochamber. A fan controls the air circulation speed.
The large specimens are frozen onto metal specimen stages which are
subsequently clamped in the specimen sledge.
Optionally the instrument can be operated with an extraction system
which largely prevents the cryochamber being soiled with section waste.
Leica CM3600 XP – Cryomacrotome
17
2.Characteristics of the Leica CM3600 XP
2.4Function
The motor-driven specimen sledge moves horizontally underneath the
knife, either producing a section (cryosectioning) with each stroke or a
high-quality specimen surface (cryo-planing technique).
Prior to each sectioning stroke, a stepper motor feeds the microtome
knife downwards towards the specimen by a selected amount of microns
(section thickness).
During each return stroke of the specimen sledge, the stepper motor
automatically carries out a knife retraction movement, programmable
between 50 and 250 μm. This protects both the knife edge and the specimen surface from being damaged.
Before starting the next sectioning stroke, the motor lowers the knife
towards the specimen surface by the selected sectioning feed plus the
set value for knife retraction.
Trimming is programmable; the desired section thickness can be
preselected.
The number of sections to be performed during trimming can be programmed via the section counter. When the programmed number of
sections has been carried out, the microtome will stop automatically.
Once the desired specimen block height has been reached, those sections that will actually be used for further examination are collected
manually via the knee lever.
The Leica CM3600 XP is operated via PC and/or manually via the knee
lever. All data entries are made via the PC.
The Leica CM3600 XP features two automatic defrost cycles.
Defrost cycle duration is software-controlled. If the evaporator surface is
already completely deiced before the programmed defrost time is up, the
defrost cycle will be aborted. In addition, manual defrost cycles can be
set as needed.
18
Instructions for use, 6v3, RevB – 01/2013
2.Characteristics of the Leica CM3600 XP
Leica CM3600 XP – Cryomacrotome
19
3.Safety
The safety and caution notes in this chapter must be observed at all times.
Be sure to read these notes even if you are already familiar with the operation and use of
other Leica products.
3.1Safety notes
This Instructions for use contains important instructions and information regarding the operational safety and maintenance of the instrument.
The Instructions for use is an important part of
the product, and must be read carefully prior to
startup and use and must always be kept near
the instrument.
If additional requirements on accident prevention and environmental
protection exceeding the scope of
this Instructions for use are imposed
by laws/regulations of the country
of operation, this Instructions for
use must be supplemented by appropriate instructions to ensure
compliance with such
requirements.
The protective devices located on the instrument and the accessories must not be
removed or modified. Only qualified service personnel authorized by Leica may repair
the instrument and access its internal components.
This instrument has been built and tested in
accordance with the safety requirements for
electrical equipment for measurement, control,
and laboratory use.
In order to maintain this condition and ensure safe
operation, the operator must observe all the
instructions and warnings contained in this
Instructions for use.
For current information about applicable standards, please refer to the
CE declaration for the instrument on
our Internet site:
http://www.LeicaBiosystems.com
3.2Warnings
The safety devices installed in this instrument by the manufacturer only constitute the basis for
accident prevention. Operating the instrument safely is, above all, the responsibility of the owner,
as well as the designated personnel who operate, service or repair the instrument.
To ensure trouble-free operation of the instrument, make sure to comply with the following
instructions and warnings.
20
Instructions for use, 6v3, RevB – 01/2013
3.Safety
The protective devices on the instrument must neither be
removed nor modified.
Only connect the instrument to a grounded power socket.
Do not interfere with the grounding function by using an
extension cord without a ground wire.
Use extreme caution when handling microtome knives and
disposable blades.
Handle knives and blades as per manufacturer's directions.
Never operate the instrument in rooms with explosion hazard.
Leica CM3600 XP – Cryomacrotome
During instrument setup / installation do not switch the
instrument on before being instructed to do so by this manual.
While working through the Instructions for use, do not use
either the knife or the specimen block.
The lid of the instrument must always be opened by two
persons. No one must work on the instrument until it has
been ensured that the lid has latched into place.
21
3.Safety
Below you find a summary of all warnings contained in this Instructions
for use.
Any use of the instrument not described in this Instructions for
use is considered improper.
Always swing the knee lever upwards before leaving the
instrument.
The chamber lid must be lifted by 2 persons when opened.
When opening the chamber lid, the lid retainer must engage.
Only when the lid is lifted can the user work in the instrument.
Prior to any work involving the knife, microtome or inside
the cryochamber, activate the emergency stop switch.
For further information, refer to chapter 3.3.1.
22
The chamber lid must be closed at all times when the instrument is operated, as otherwise the emergency stop switch is
not accessible.
The user must be able to reach the specimen easily while
working on the microtome. During all work, wear closefitting clothing and use safety glasses.
Caution when using the foldaway extraction!
Before you manipulate the specimen or the knife, the extraction must always be folded all the way to the side. Otherwise,
it could fold back and press your hand against the knife.
Instructions for use, 6v3, RevB – 01/2013
3.Safety
Prior to any work involving the knife, microtome or inside the
cryochamber, swing the knee lever upwards.
For any work involving the knife, microtome or inside the
cabinet always wear special protective gloves.
For reasons of safety and accuracy, the maximum trimming
thickness should not exceed 100 μm per section.
When trimming biological material (particularly bone),
section thickness should not exceed 50μm.
Never try to catch or grab the knife.
Never introduce your hands into the space between
specimen and knife.
Leica CM3600 XP – Cryomacrotome
Caution when adjusting the knife holder from
100 to 200mm – a crushing hazard exists.
Radioactive specimen waste must be disposed of according
to the local radiation safety regulations.
For removing the microtome (approx. 190kg) from the
cryochamber, a ceiling crane capable of carrying that weight
should be available.
For safety reasons, we strongly advise you against lifting the
microtome (approx. 190kg) from the cryochamber without
appropriate lifting gear. Do not attempt to lift the microtome
from the chamber manually, even if several persons are there
to help.
23
3. Safety
3.3Safety devices
3.3.1 Emergency stop switch
The Leica CM3600 XP is equipped with an emergency stop switch (1)
located on the chamber surface to the left of the window.
Activating the emergency stop switch
Press the Emergency stop switch (1) to stop the microtome immediately.
Always press the emergency stop switch before making modifications to the microtome, knife or specimen (see warning
message below the disc) to prevent accidental activation of
the microtome using the knee lever.
1
24
Resetting the emergency stop switch.
To reset the emergency stop switch (1) turn it in the direction of the
arrow until it is released upwards back to its original position.
Instructions for use, 6v3, RevB – 01/2013
3.3.2 Knee lever
3.Safety
3.3.3 Window
3.3.4 Cryochamber
1
Never leave the instrument unattended when
the knee lever is folded out (1) to prevent the
microtome from being set in motion accidentally.
Always swing the knee lever upwards before leaving the instrument.
The window is heatable and equipped with a
lock button (2). To open the window, lift lock
button (2) slightly upwards and turn it by 180°.
2
Before opening the large chamber lid, first
close the window and lock with the lock
button (2).
When opening the chamber lid, make sure the
lid retainer (3) engages to prevent the chamber
3
lid from falling.
Leica CM3600 XP – Cryomacrotome
When opening the chamber lid,
the lid retainer must engage.
25
4.Site requirements
4.1Site requirements at place of installation
• Relative humidity not over 60 % and non-condensing.
• Room temperature consistently between +5 °C and +22°C.
• Room volume must be at least 30 m3.
• The substrate must have sufficient load capacity and rigidity for the weight
of the instrument, 660kg.
• Do not operate the instrument in rooms with explosion hazard.
• The instrument is designed for indoor use only.
• The instrument must be connected to a
grounded socket. Only use the cable provided;
never use an extension cable.
• The power plug and emergency stop switch
must be without obstruction.
• Avoid vibrations, direct sunlight and heavy
variation in temperature.
• Installation elevation up to 2000 m above sea
level.
If possible at all, the room should be air-conditioned. If ambient conditions are not maintained
as specified, instrument performance may be
negatively affected (lowest specified temperature
may not be reached, frost may accumulate).
Approx. 3.5 m
All transport paths for the Leica CM3600 XP must
be at least 1.50 m wide; especially doorways must
have that width. This specification already takes
into account the swivel range of the instrument
when passing through doors (if it is possible to
keep the instrument straight while passing though
doors, a door width of 95cm is sufficient). The
Leica CM3600 XP has a total length (refrigeration
and control unit and cryochamber) of 2.70m or,
with the connecting lines on the left side of the
refrigeration and control unit, of approx. 2.80m,
i.e. a minimum width of the installation wall of
2.90m is required. Ideally the wall should measure 3.50 m more to provide easy access to the
left side of the unit for technical service work. The
required minimum distance between the back
panel of the instrument and the wall is 30cm, the
recommended distance is 50cm.
Installation wall, ideal dimensions (view from above)
0.5 m
26
Approx. 0.8 m
Leica CM3600 XP
Approx. 2.7 m
High room temperatures and excessive
air humidity affect
the cooling capacity
of the instrument.
A second protective conductor terminal is located on the instrument.
Both terminals must be used.
There must not be any differences in potential between the two
protective conductor terminals.
Telephone connection
For remote failure diagnosis, a telephone connection must be available to
hook up the modem. The phone connection must be direct, i.e. must not
be controlled by an additional computer (server).
Compressed air supply
If you want to use the optional extraction system:
Compressed air supply for the extraction system (p = 5 - 8 bar) must be
available.
Leica CM3600 XP – Cryomacrotome
27
5.Installation
5.1Unpacking and installation
Only duly trained personnel may unpack and install the Leica CM3600 XP.
Please contact your local Leica sales organization for appropriate advice.
5.2Standard delivery
The standard delivery includes:
• 1 Leica CM3600 XP, consisting of:
• Cabinet
• Refrigeration and control unit
• PC (computer, monitor, keyboard, mouse)
• Microtome 450 C with integrated knife holder
• 1 Disposable blade holder 157 AR
• 1 Dispenser with 10 disposable blades, type H 45 L
• 1 Roll of section collecting tape, type 810
• 1 Roll of section collecting tape, type 4248
• 1 Bottle of low temperature oil PDP 40, 500 ml
• 1 Positioning tool for disposable blade holder
28
• 1 Tool set, consisting of:
• Allen keys, set of 7, in different sizes: 1.5, 2.0, 2.5, 3.0, 4.0, 5.0, 6.0
• Fork wrenches, set of 2, sizes 15 and 17
• 1 Syringe, 10 ml with injection needle,
• 1 Instructions for use
• 1 Set of manuals for PC
• 1 Pressure plate
• 1 Plug for alarm contact
• 1 Pair of protective gloves
Check the delivery carefully against the packing list, delivery
note and your order.
If you notice any discrepancies, please contact your local
Leica sales office or dealer immediately.
Instructions for use, 6v3, RevB – 01/2013
5.3Port and switch panel
5.Installation
Port and switch panel
Interface
RJ 45
Connection for
foot switch
Connection for
compressed air
GFCI
switch
Main switch
Switch for
local
alarm signal
Connection for
external alarm
Control
lamps
Circuit
breaker
Caution!
Only the POWER SWITCH disconnects the instrument
from the power supply!
To do so, move the switch into the "0" position.
Leica CM3600 XP – Cryomacrotome
29
5.Installation
5.3.1 Port and switch functions
Main switch
In the "0" position, this switch disconnects the instrument from the power
supply.
Connection for footswitch
Optionally, a foot switch can be connected for the purpose of section
thickness documentation (GLP).
RS 232 interface
The RS 232 interface links the PC to the PLC.
Switch for local alarm signal
To activate the local alarm function, press the alarm signal switch.
The green LED in the switch button lights up.
To deactivate the local alarm function, press the alarm signal switch
once again. The green LED in the switch button is extinguished.
30
Compressed air supply
Connection of compressed air hose to extraction unit.
Control lamps
Indicate function of the refrigerating sets.
Instructions for use, 6v3, RevB – 01/2013
5.Installation
Connection for external alarm
Forwarding an external alarm.
The external alarm is triggered, when the chamber temperature exceeds
the selected value.
When the temperature dips back down below the defined threshold, the
external alarm is immediately switched off.
Loss of mains power supply (instrument switched off or power failure) will
also trigger the external alarm.
On return of mains supply the alarm is automatically switched off.
The instrument has a socket via which an external alarm can
be output (see Fig. on p. 29 and wiring diagram). The maximum permitted voltage that can be switched is 250V.
Because a compatible plug is provided with the instrument,
the user must make a corresponding connection onsite.
Important!
The connection of an alarm to the plug provided must be
carried out by trained personnel if the voltages are greater
than 33V AC or 70 V DC.
Wiring the connection for external alarm in the instrument
21
24
Leica CM3600 XP – Cryomacrotome
Rel
-g1
22
1
Socket
CA 6
5
The wiring diagram shown here illustrates how the socket for the external
alarm is wired in the instrument.
The specified digits correspond to those
on the plug provided.
3
31
5.Installation
5.3.2 Fuses
GFCI switch
Protects the entire instrument.
Automatic cutout
Protects the refrigerating sets and all electronic components.
The Leica CM3600 XP is equipped with the following fuses:
• GFCI switch
• Automatic cutout
• Fuse protecting the main power switch
GFCI switch
After the GFCI switch has been activated, it will be in the lower position.
To switch it back on, flip the GFCI switch upwards.
To check the
function, trigger
the GFCI switch
once a month.
GFCI switch
32
Automatic cutout
After the automatic cutout has been activated, it will be in the lower
position. To activate, push the switch upwards.
Automatic cutout
Instructions for use, 6v3, RevB – 01/2013
5.4PC
Fuse for
power
switch
5.Installation
Fuse protecting the mains switch
If the mains switch fuse has blown, please call Technical
Service.
The Leica CM3600 XP is equipped with a commercial PC, monitor,
keyboard, mouse and an internal modem. For further information,
please refer to the manual of the PC.
If the PC is provided by the user, it must fulfill the following requirements:
Processor:Intel Celeron or Pentium 5
Clock frequency:>= 800 MHz
Hard disk drive:>= 500MB
Operating system:Microsoft Windows 2000 or XP
Screen resolution:1024 x 768 pixels
Keyboard and mouse
Leica CM3600 XP – Cryomacrotome
33
6.Software
6.1Start and log-in procedure
Requirements:
PC must be on and the Microsoft Windows XP® operating system must
have booted and be ready for service.
Registration mask
Doubleclicking on Icon "CM3600 XP" starts the application.
34
1. Type the user name in the identification field.
2. Type the correct password in the password field.
3. Click the OK button to complete registration.
After successful registration, the "Main window" will open. For further
information, refer to chapter 6.4.
After 5 faulty registration attempts, access to the unit will
be denied. Only an Administrator can remove the lock.
For further information, refer to chapter 6.5.2.
Instructions for use, 6v3, RevB – 01/2013
6.2Description of the window elements
The window surface is divided into several areas:
• Title bar
• Tool bar
• Work space
• Status bar
6.Software
Title bar
Tool bar
Work space
Status bar
6.2.1 Title bar
The "Title bar" displays information on instrument name and software
version number.
6.2.2 Tool bar
The "Tool bar" provides quick access (via mouse-click) to individual
software functions.
When clicking on an icon, the corresponding window will open up.
Active icons will light up in green.
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6.Software
Icons
Clicking on the icon opens the "Main window", which also
opens up after completion of the start and log-in procedure.
Clicking on the icon opens the "Parameter settings" window.
Clicking on the icon opens the "Temperature curve" window.
Clicking on the icon opens the "Chronological event list"
window.
Clicking on the icon opens the "Alarm list" window.
Clicking on the icon switches the chamber illumination on or
off. Active icons will light up in yellow.
Clicking on the icon opens the "Section documentation"
window.
36
Clicking on the icon activates the "Photo mode".
Clicking on the icon creates a printout of the current screen.
Clicking on the icon opens the "Remote inquiry" window.
Clicking on the icon opens the "Help" window.
Clicking on the icon opens the "Saves" window.
When activated, the icon will light up in green.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Clicking on the icon opens the "Label printing" window.
When activated, the icon will light up in green.
Clicking on the icon activates the "Foot switch". When activated, the icon will light up in green and the current sectioning
data will be saved.
The "Stop" icon appears immediately when the emergency
stop switch is pressed - it will be blinking in red color. The
instrument will be inoperational until the operator acknowledges the corresponding error message in the "Alarm list"
window.
For further information, refer to chapter 6.8.
Clicking on the "Log off" icon logs off the user currently logged
on. Clicking again reopens the registration mask for Log-in.
Clicking on "Quit" closes the application.
Clicking on the icon opens a window providing information on
software version number, date, copyright and serial number of
the application.
6.2.3 Work space
In the work space area all control entries and settings are made.
Display format may vary depending on the icon selected in the tool bar.
6.2.4 Information bar
The information bar displays the following information:
• the currently registered user,
• instrument name and software version number,
• number of sections carried out so far,
• name of laboratory.
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37
6.Software
6.3Initialization
To be able to work with the instrument, after completion
of the start and log-in procedure the microtome must be
initialized.
For initialization, proceed as follows:
1. In the "Main window", click on the INIT button blinking in yellow color
(in "Mode" field).
The "Safety check - initialization" window will open up.
38
2. Check whether you can confirm each safety query - if not, carry out
the required actions. Subsequently, confirm each safety query by
mouse click on the corresponding check box.
3. Having confirmed all safety queries, click on OK.
The microtome will then be initialized:
• The knife holder moves to the uppermost position.
• The microtome sledge moves to the end positions on the right and left.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Once initialization has been started, it can only be interrupted
by pressing the emergency stop switch. For further information, refer to chapter 3.4.1.
After the initialization procedure has been completed, the color of the
INIT button will first change from yellow to green and after a few seconds, the caption on the button will change from INIT to AUTOMATIC.
The microtome is now ready for service. For further information, refer to
chapter 6.4.9.
Leica CM3600 XP – Cryomacrotome
39
6.Software
6.4Main window
The main window either opens up automatically after completion of the start and log-in procedure or by clicking on the
"Main window" icon.
40
The work space of the main window is divided as follows:
• Chamber temperature
• Time
• Automatic defrost
• Automatic dehydration
• Knife movement
• Extraction
• Section program
• Sledge speed
• Mode (of operation)
• Cutting window
Instructions for use, 6v3, RevB – 01/2013
6.4.1 Chamber temperature
Indication of set or actual chamber temperature.
See chapter 6.5.1 "Parameter settings" on how to configure these
settings.
6.4.2 Time
Indication of real time and date.
See chapter 6.5.1 "Parameter settings" on how to set the chamber
temperature.
6.4.3 Automatic defrost cycle
6.Software
Indication of start time of 1st or 2nd automatic defrost cycle.
See chapter 6.5.1 "Parameter settings" on how to configure these
settings.
Manual defrost button
Clicking on this button immediately starts a defrost cycle. During the
defrost cycle, the button blinks in yellow color. Clicking on the button
once more aborts the defrost cycle.
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41
6.Software
6.4.4 Automatic dehydration
Indication of start time, start date and duration of the automatic
dehydration.
See chapter 6.5.1 "Parameter settings" on how to configure these
settings.
MANUAL DEHYDRATION button
Clicking on this button immediately starts a dehydration cycle. Clicking on
this button once more, stops dehydration. When activated, the button
blinks in yellow color.
If the temperature is to be decreased during automatic dehydration,
this must be specified in the "Parameter settings" window. For further
information, refer to chapter 6.5.1.
6.4.5 Knife movement
42
Indication of section and retraction thickness. Actual indicates the
current position of the knife holder. Set indicates the desired position
of the knife holder.
Instructions for use, 6v3, RevB – 01/2013
6.Software
The red "Retraction" caption is displayed only during the return stroke of
the sledge.
The "Knife movement" icons can be activated only in
MANUAL Mode. For further information, refer to chapter 6.4.9.
The entry limit for actual and set position may vary between
70 - 200μm depending on the instrument version. The standard
version is shipped with a limit of 70 μm.
To modify any of the settings, mouse-click on the corresponding icon.
Entries are completed by pressing the ENTER key.
KNIFE UP button on the left
Clicking on this icon moves the knife holder upwards for a short while.
If you click on and hold this icon, the knife holder will continue to move
upward until the left mouse button is released. While active, the icon
blinks in yellow color.
KNIFE DOWN button on the left
Clicking on this icon moves the knife holder downwards for a short while.
If you click on and hold this icon, the knife holder will continue to move
downward until the left mouse button is released. While active, the button
lights up in yellow.
KNIFE UP button on the right
Clicking on the KNIFE UP button on the right activates the corresponding
function. The knife holder will move upwards until reaching the upper
limit position. To stop the knife movement, click on the button once more.
When activated, the button will light up in green.
Leica CM3600 XP – Cryomacrotome
43
6.Software
KNIFE DOWN button on the right
Clicking on this button moves the knife holder fast downwards for a short
while. If you click on and hold this button, the knife holder will continue to
move downward until the left mouse button is released. While active, the
button lights up in yellow.
PRESELECTION button
Clicking on this button activates the "Set position" display. Click on the
displayed value to change the setting. While active, the icon lights up in
green color.
START/STOP button
The START/STOP button can be activated only when the PRESELECTION
button is active. Clicking on START/STOP moves the knife holder so the
selected set position. When activated, this button will light up in green.
Clicking on this button once more stops the knife holder.
Once the knife holder has reached the upper limit position,
both KNIFE UP buttons blink in green color.
Once the knife holder has reached the lower limit position,
both KNIFE DOWN buttons blink in yellow color.
44
Once the set position has been reached, it can only be left
by activating the knee lever. For further information, refer to
chapter 3.4.2. A corresponding message will appear on the
screen.
Instructions for use, 6v3, RevB – 01/2013
6.4.6 Extraction system
6.4.7 Sectioning program
6.Software
The extraction is active only if an extraction device
is connected to the instrument. For further information, refer
to chapter 9.1.
Button EXTRACTION ON/OFF in continuous mode
Clicking on this button activates or deactivates continuous extraction.
When activated, the button will light up in green.
Button EXTRACTION ON/OFF in intermittent mode
Clicking on this button activates or deactivates intermittent extraction.
When activated, the button will light up in green.
Indication of set or actual number of sections.
To modify any of the settings, mouse-click on the corresponding button.
Entries are completed by pressing the ENTER key.
PROGRAM button
Clicking on this button activates the set value display.
Leica CM3600 XP – Cryomacrotome
The buttons can be activated only in AUTOMATIC Mode.
Clicking on the START/STOP button located in the "Mode"
field starts or stops the sectioning program. For further
information, refer to chapter 6.4.9.
45
6.Software
6.4.8 Sledge speed
Click on the activated set value field to modify the setting.
PAUSE button
Clicking on this button stops the sectioning program. Clicking on the
button once more restarts the sectioning program, resuming the current
section where if was left off.
Indication of current sectioning or return stroke speed in mm/s
(millimeters per second). To modify any of the settings, click on the
corresponding value.
The graphic display is active only while sectioning is in progress.
The currently selected sectioning and return stroke speed are displayed
via a green bar on a scale from 0 - 80mm/s.
46
Instructions for use, 6v3, RevB – 01/2013
6.4.9 Mode of operation
6.Software
To be able to work with the instrument, after completion of the start and
log-in procedure the microtome must be initialized. For further information, refer to chapter 6.3.
Buttons prior to initialization
Buttons after initialization
INIT button
Clicking on INIT opens the "Initialization" window. For further information,
refer to chapter 6.3. Prior to initialization, the button blinks in yellow color.
After the initialization procedure has been completed, the color of the
INIT button will change from yellow to green. After a few seconds, the
caption on the button will change from INIT to AUTOMATIC.
AUTOMATIC button
Clicking on this button switches the instrument to automatic mode. When
activated, the button will light up in green.
MANUAL button
Clicking on this button switches the instrument to manual mode. When
activated, the button will light up in green.
START/STOP button
This button can only be activated in automatic mode, where it starts or
stops the sectioning program. When activated the START/STOP and
AUTOMATIC buttons will light up in green.
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47
6.Software
6.4.10 Cutting window
Indication of the left and right block edge, graphically displayed by blue
lines. They indicate the maximum horizontal stroke of the microtome
sledge on a scale from 0 - 500mm.
Indication of the actual position of the microtome sledge. The sledge
position is graphically displayed by the green line.
To modify any of the settings, mouse-click on the "Actual position"
indication.
Clicking on the icons on the left and right of the scale lets you
adjust the left and/or right half of the block to the actual
microtome sledge position indicated.
LEFT BLOCK EDGE button
Clicking on the inscription LEFT BLOCK EDGE opens up an entry window.
Select the left limit position to where the microtome sledge can move on
a scale from 0 - 500 mm.
48
RIGHT BLOCK EDGE button
Clicking on the inscription RIGHT BLOCK EDGE opens up an entry
window. Select the right limit position to where the microtome sledge can
move on a scale from 0 - 450mm.
Instructions for use, 6v3, RevB – 01/2013
6.5Parameter settings
6.Software
Click on "Parameter settings" to open the corresponding
window.
The work space of the parameter settings window is divided as follows:
• Parameter setting
• Password list
• Configuration
• Reference voltages
• Language selection
• Initialization
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49
6.Software
6.5.1 Parameter setting
Set chamber temperature
Click on this indication to change the currently selected value.
Temperature values from -30 to +1°C can be selected.
Alarm temperature
Click on this indication to change the currently selected value.
Temperature values from -25 to -5°C can be selected.
50
The alarm temperature should not be too close to the set
chamber temperature. If the alarm temperature is too close to
the set chamber temperature, an alarm can be triggered
simply when working with the instrument during a prolonged
period of time or during the daily defrost cycle. A temperature
difference of approx. 5 K (Kelvin) is recommended.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Time and date
Indication of time and date. Clicking on this indication opens the dialog
box "System time".
Clicking on individual parameters (day, month, year,
hour or minutes) the corresponding setting can be changed.
Click OK to confirm.
Start time 1 defrost
Indication of start time of the 1st automatic defrost cycle.
Clicking on this indication opens the dialog box "defrost time 1".
Click on individual parameters (hours or minutes) to change the corresponding settings. Click OK to confirm.
Start time 2 defrost
Indication of start time of the 2nd automatic defrost cycle. Clicking on this
indication opens the dialog box "defrost time 2".
Click on individual parameters (hours or minutes) to change the corresponding settings. Click OK to confirm.
Button active/inactive
Clicking on this button activates or deactivates the 2nd automatic defrost
cycle.
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51
6.Software
Dehydration date
Dehydration start time
Dehydration duration
Indication of start date and time, and duration of the automatic dehydration cycle. Clicking on one of the parameters opens the dialog box
"Dehydration time".
Click on individual parameters (day, month, year, hour or minutes) to
change the corresponding settings.
The desired duration of the dehydration procedure can be selected in the
duration field. Values from 1 - 48h (hours) can be selected. Click OK to
confirm.
To speed up the dehydration procedure, the dehydration
cryochamber temperature can be lowered. This can be done
via the "Dehydration T-reduction" indication.
52
Dehydration T-reduction
Indication of temperature reduction for dehydration. Click on this
indication to change the currently selected value. Values from 0 - 20K
can be selected.
Section thickness
Indication of section thickness. Click on this indication to change the
currently selected value. Values from 0 - 200μm can be selected.
Retraction value
Indication of the currently selected retraction value. Click on this
indication to change the currently selected value. Values from
50 - 250μm can be selected.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Cutting speed
Return speed
Indication of cutting and return speed. Click on one of the indications to
change the currently selected value. Values from 0 - 80 mm/s can be
selected.
Left block edge
Right block edge
Indication of left and right block edge. Click on the individual indication to
change the currently selected value. Values from 0 - 500mm/s can be
selected. For further information, refer to chapter 6.4.10.
Photo position dwelling time
Photo position triggering time
Indication of photo position dwell and triggering time. Click on the individual indication to change the currently selected value. Values from
0 - 255s (seconds) can be selected. For further information, refer to
chapter 6.11.
EDIT button in the password list
Clicking on this button opens the "User configuration" window. For further
information, refer to chapter 6.5.2.
EDIT button in the configuration field
Clicking on this button opens the "Configuration" window. For further
information, refer to chapter 6.5.3.
Leica CM3600 XP – Cryomacrotome
53
6.Software
6.5.2 Password list
To access the "User configuration", the registered user must
be an administrator.
The "user configuration" indication consists of the following columns:
54
• No.
Indication of the program-controlled running number.
• Active
Indication of status of the user selected. Active users are displayed
with an "X".
• User name
Indication of the user name, which is introduced in the identification
field during the start and log-in procedure.
• Full name
Indication of full user name.
• User rights
Indication of the corresponding access right. The administrator has
full access to all application functions. Users have only limited access.
Instructions for use, 6v3, RevB – 01/2013
6.Software
CLOSE button
Clicking on this button closes the "User configuration" window.
Doubleclicking on a line in the configuration indication
opens the dialog box "User configuration".
In the "user configuration" dialog box the following settings can be
selected:
• No.
Indication of the running number. No changes can be made in this
field.
• Active
Clicking on the check box sets the user status to "active". Only after
this step can a user successfully register via the start and log-in
procedure.
• User name
Enter the desired user name. This must not be more than
10 characters (numeric or alphanumeric) long.
• Full name
Enter full first and last name of user.
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55
6.Software
• User rights
Click on the USER RIGHTS line to open a drop down menu. User
property "Administrator" or "User" can be selected.
Administrators have full access to all application functions.
Users do not have access to the password list and to the
configuration parameters in the "Parameter settings"
window.
• Identification
Type in the identification which is needed for the start and log-in
procedure.
• Confirm identification
Repeat the identification.
DELETE button
Clicking on this button deletes the selected user without any prior safety
query.
OK button
Clicking on this button saves the entries and closes the "User configuration" dialog box.
56
CANCEL button
Clicking on this button closes the "User configuration" dialog box. Any
changes made are not saved.
Instructions for use, 6v3, RevB – 01/2013
6.5.3 Configuration
6.Software
To access "Configuration", the registered user must be an
administrator.
The "Configuration" window contains the following tabs:
• Text main study
• Text substudy
• Measured values
• General
• Labels
• Comments
OK button
Clicking on this button saves the entries and closes the "Configuration"
dialog box.
CANCEL button
Clicking on this button closes the "Configuration" window without saving
any of the changes made.
Leica CM3600 XP – Cryomacrotome
57
6.Software
Tabs "Text main study" and "Text substudy"
The structure of the two tabs is identical. A header and 7 freely selectable comments for each main and/or substudy can be defined.
The text entered into the 8 entry fields is copied into the dialog box for
creating main studies and substudies. Each individual text can consist of
up to 30 characters. For the configuration of a main study or substudy see
chapter 6.10.
58
Tab "Measured values"
Select the measurements to be shown in the "Data function" window after
selecting a main study or substudy.
Instructions for use, 6v3, RevB – 01/2013
6.Software
For the configuration of a main study or substudy see chapter 6.10.
The following measured values can be selected:
• Set chamber temperature
• Actual chamber temperature
• Alarm temperature
• Set section thickness
• Actual section thickness
• Knife holder position
• Dehydration
• Comment
Tab "General"
The "General" tab contains the following entry fields:
• Company/lab
• Printer for label printing
• Font size
• Printer for protocoling
• Printer for hardcopies
• Path for export
• Millitron
• Activate millitron
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6.Software
Company/lab
Enter the name of the company or the laboratory. The name will be
displayed in the "information bar", on the right side, see chapter 6.2.4.
Printer for label printing
Clicking on this line opens a drop down menu. If a printer for label printing
is connected, it can be selected in this menu.
Font size
Clicking on this line opens a drop down menu. Here you can select the
desired font size for the labels.
Printer for protocoling
Clicking on this line opens a drop down menu. If a printer for protocoling
is connected, it can be selected in this menu.
Printer for hardcopies
Clicking on this line opens a drop down menu. If a printer for hardcopies
is connected, it can be selected in this menu.
If no printer can be selected, a printer must be retroinstalled
in the PC's Microsoft Windows XP® operating system.
60
Path for export
Clicking on the "Export path" symbol opens the dialog box "Path
for export".
Here you can select a directory where you want to save the
data.
Instructions for use, 6v3, RevB – 01/2013
6.Software
The export file is filed as a text file and according to the export path
selected.
Millitron
Provided an external Millitron measuring device is connected to the PC,
the corresponding serial connecting port can be selected via the drop
down menu.
Activating the millitron
Clicking on the check box activates the external millitron measuring
device.
"Labels" tab
In the label tab you can enter the text for the labels. For further information, refer to chapter 6.16.
9 lines of 50 characters each can be entered. Lines where no characters
have been entered are printed as empty lines.
Clicking on the BOLD check box in the corresponding line activates bold
print.
Predefined variables commencing with the special character "@",
represent specific information on the labels.
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61
6.Software
The following information can be represented as variables:
@aMain study - name
@bMain study - comment line 1
@cMain study - comment line 2
@dCurrent date (date)
@eMain study - comment line 3
@fMain study - comment line 4
@gMain study - comment line 5
@hMain study - comment line 6
@iMain study - comment line 7
@jSubstudy - name
@kSubstudy - comment line 1
@lSubstudy - comment line 2
@mSubstudy -comment line 3
@nSubstudy - comment line 4
@oSubstudy - comment line 5
@pSubstudy - comment line 6
@qSubstudy - comment line 7
@tCurrent time (time)
@0Measured value - no. of section
@1Measured value - date of section
@2Measured value - time of section
@3Measured value - set chamber temperature
@4Measured value - actual chamber temperature
@5Measured value - alarm temperature (yes/no)
@6Measured value - set section thickness
@7Measured value - actual section thickness
@8Measured value - knife holder position
@9Measured value - dehydration (on/off)
62
Repeating the variable wild card defines the length of the variable. The
variable wild card @333 will display 4 characters for "set chamber temperature", as "@" already represents one character. Text variables are
always printed left-justified, numbers right-justified.
Instructions for use, 6v3, RevB – 01/2013
6.Software
"Comments" tab
Frequently used comments can be entered into this tab.
Button NEW
Clicking on this indication opens the dialog box "Comment on section"
Here you can enter a comment on a section.
Clicking on OK saves the entry and closes the window. Clicking on Cancel
closes the "Comment on section" dialog box. Any entry made is not saved.
CHANGE button
Clicking on this indication opens the dialog box "Comment on section".
The existing entry can be changed.
DELETE button
Clicking on this indication opens a safety query dialog. If the safety query
is confirmed by clicking on OK, the comment will be permanently deleted.
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63
6.Software
6.5.4 Reference voltages
6.5.5 Language selection
Indication of the current reference voltage in Volt.
Buttons 1 to 8
Clicking on these buttons changes the reference voltage. The individual
reference voltage values are predefined and cannot be changed. The
display will read the new selected value. Activated buttons will light up in
green.
The flag buttons indicate the languages that can be selected. Clicking on
one of the flag symbols changes the user interface to the corresponding
language.
6.5.6 Initialization
64
Clicking on EXECUTE in the initialization field opens the "Main window"
and the INIT button reappears in the "Mode of operation" field.
Clicking on INIT opens the dialog box "Safety check - initialization". For
further information, refer to chapter 6.3.
Instructions for use, 6v3, RevB – 01/2013
6.6Temperature curves
The window contains the following window panes:
• Work space
• Diagram
6.Software
Click on the temperature curve symbol to open the corresponding window.
Work space
Diagram
Leica CM3600 XP – Cryomacrotome
The "Temperature curves" window is only for failure analysis
by Leica Service engineers.
65
6.Software
6.6.1 Work space
REFRESH button
Clicking on this button updates the diagram display.
RULER button
If you click on this button, a ruler will be displayed in the diagram. Use the
mouse cursor to move ruler to a certain measuring value position in order
to read the measured value more exactly.
PRINT button
Clicking on this button creates a screen printout of the current diagram
display.
REZOOM button
Clicking on this button resets the diagram display back to how it was.
START and STOP buttons
Clicking on one of these buttons starts or stops the recording of measured values in the diagram.
66
Buttons <<< and >>>
Clicking on one of these buttons starts a forward or backward scroll in
the diagram.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Clicking on one of the check boxes in the work space, the 8 temperature
sensors of the instrument can be displayed individually in the diagram.
The font color of the check boxes helps to identify the corresponding
measured values in the diagram, which are displayed in the same color.
The following check boxes can be activated / deactivated via a mouse
click:
• T1 to,
• T2 to 2,
• T3 tv1,
• T4 tv Head II,
• T5 tv2,I,
• T6 tv2,II,
• T7 tHg2,
• T8 Box.
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6.Software
6.6.2 Diagram
The diagram indicates the following:
• Temperature in degree centigrade on the y-axis
• Time and date on the x-axis
• Graphical representation of the 8 temperature measuring points in the
instrument by colored lines
68
The diagram can be enlarged as follows:
1. Within the diagram, click and hold the left mouse button.
2. With the mouse, create a zoom box on the area to be enlarged by
dragging the mouse cursor to the right and downwards at the same
time.
3. Release the left mouse button.
The selected diagram zoom box is enlarged. All measured values
activated via the check boxes in the work space are displayed.
Instructions for use, 6v3, RevB – 01/2013
6.7Chronological event list
The events list is a table displaying the events chronologically, in order of
date and time. In this list, all events concerning the program are saved.
The work space is divided up as follows:
6.Software
Click on "Event list" to open the corresponding window.
Work space
Event table
• Work space
• Event table
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69
6.Software
6.7.1 Work space
FILTER button
Clicking on this indication opens the dialog box "Filter"
Here you can define a time filter limiting the event table indication to one
day, one week or one month.
To set a filter, proceed as follows:
70
1. Click on one of the check boxes DAY, WEEK or MONTH to define the
desired time interval.
2. In the calendar field, select the desired start day for the event information. For this purpose, you can also use the two navigation buttons
on the left and right of the "Month" header.
In the "Time filter" field you can now see the start time (left) and end time
(right) of the selected time interval.
You can set an additional filter in the "Text filter" field.
Click on OK to close the dialog box and display the desired alarm messages in the events list.
Click on CANCEL to close the window without changing any of the
changes made.
Instructions for use, 6v3, RevB – 01/2013
6.Software
Comment
Clicking on an event in the events list activates the "Comment" field. You
can enter a comment regarding the selected event. After confirmation
with the ENTER key, the note will be displayed in the event table.
Number
Number of events displayed in the events list.
PRINT button
Clicking on this button creates a screen printout of the current display.
EXPORT FILE button
Click on this button to export the events table into a text file.
Leica CM3600 XP – Cryomacrotome
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6.Software
6.7.2 Event table
The table is divided into the following columns:
• Date/time
Date and time of the events.
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• User
Name of the user who was logged in when the event occurred.
• Message
Event messages (short description of event).
• Comment
Comments on the events. For further information, refer to chapter 6.7.1.
Individual events messages will be displayed on the events
list for a maximum of 90 days from the date when the event
occurred. After that, the data will be saved into a text file.
Instructions for use, 6v3, RevB – 01/2013
6.8Alarm list
6.Software
Click on the "Alarm list" symbol to open the corresponding
window.
Work space
Event table
Chronological display of the alarm list as a table, in order of date and
time. In this list, all events concerning the program are saved.
The window contains the following window panes:
• Work space
• Event table
Leica CM3600 XP – Cryomacrotome
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6.Software
6.8.1 Work space
In the work space the following parameters can be selected:
FILTER button
Clicking on this indication opens the dialog box "Filter"
For further information, refer to chapter 6.7.1.
Comment
Clicking on an event in the alarm list activates the "Comment" field. You
can enter a comment regarding the selected event. After confirmation
with the ENTER button, the note will be displayed in the event table.
Number
Number of alarm messages displayed in the alarm list.
CONFIRM button
By clicking on this button the currently registered user confirms the
alarm message previously selected in the alarm list.
74
PRINT button
Clicking on this button creates a screen printout of the current indication.
EXPORT FILE button
Click on this button to export the alarm list into a text file.
Instructions for use, 6v3, RevB – 01/2013
6.8.2 Event table
6.Software
The table is divided into the following columns:
• Occurred
Indication of date and time when the alarm started
• Cleared
Indication of date and time when the alarm stopped
• Confirmed
Indication of date and time when the registered user confirmed the
alarm message. For further information, refer to chapter 6.8.1.
• User
Name of the user who confirmed the alarm.
• Message
Indication of alarm messages.
• Comment
Indication of the comment made on the corresponding alarm message.
Leica CM3600 XP – Cryomacrotome
75
6.Software
6.8.3 Error codes: meaning and troubleshooting
Error codeError messageTrouble shooting
Error 01
Error 02
Error 03
Error 04
Error 05
Error 06
Error 07
Error 08
Error 09
Knife holder – limit position
exceeded.
Limit position of sledge exceeded
Chamber – Alarm temperature
exceeded
Power failure
Data transfer failed (happens rather
frequently subsequent to a power
failure)
Emergency stop activated
Stepper motor – step error
Refrigerating system – pressure
exceeded
• Re-initialize instrument. If the problem
recurs, call Technical Service.
• Re-initialize instrument. If the problem
recurs, call Technical Service.
• Check whether there has been a power
failure!
• Check the selected alarm temperature
value. It must differ at least 5 K from the
chamber temperature selected.
• Check the cable connection between PC
and control unit.
• If problem recurs, call Technical Service
• Not defined
• Deactivate emergency switch
• Call Technical Service.
• Check the air circulation between the
condenser and the control unit.
• Check the distance of the instrument to
the wall (at least 50 cm)!
• If problem recurs, call Technical Service
Error 10
Error 11
76
Flap limit switch malfunction
Call Technical Service
• Re-initialize instrument. If the problem
recurs, call Technical Service.
• Call Technical Service.
Instructions for use, 6v3, RevB – 01/2013
6.9Chamber illumination
6.10 Section documentation
6.Software
Click on the symbol to switch on the illumination of the
cryochamber. Another mouse click will switch the chamber
illumination back off. Active icons will light up in yellow.
Click on the "Section documentation" symbol to open the
corresponding window.
Tree
diagram
Studies protocol
The window contains the following window panes:
• Tree diagram
• Protocol of studies
• Event table
Leica CM3600 XP – Cryomacrotome
Event table
77
6.Software
6.10.1 Tree diagram
Indication of all main studies or substudies in a tree diagram. For navigation purposes, click on the preceding plus or minus sign.
The different study types are identified by the preceding colored folder
symbols:
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• Yellow folder symbol
Main studies (several).
• Green folder symbol
Main study.
• Blue folder symbol
Substudy.
• Yellow folder symbol "saved"
Main studies (several).
If you click on a study, the studies protocol and the events table will be
displayed on the right. For further information, refer to chapter 6.10.2.
Instructions for use, 6v3, RevB – 01/2013
6.10.2 Studies protocol
6.Software
By clicking on a main study in the tree diagram, the following indication
will be displayed in the "Studies protocol" area:
The table is divided into the following columns:
• No.
Running number automatically allocated by the application.
• Date
Date when the main study was created.
• Name of main study
Name of main study displayed.
To create a new main study or substudy proceed as follows:
1. Right-mouse-click on a spot anywhere in the upper table. A context
menu will open up.
2. Select NEW. A dialog box for a new main study or substudy will open
up.
2. Insert the name of the new main study or substudy.
3. Press ENTER to confirm your entry and to close the dialog box.
Leica CM3600 XP – Cryomacrotome
79
6.Software
When clicking on an existing substudy in the tree diagram the following
indication will be displayed in the "studies protocol" area:
The table is divided up as follows:
• No.
Indication of the running number automatically allocated by the
application, in the order of date of creation of the main study.
• Date/time
Date and time when the section was made
• T-set
Set temperature at the time the section was made
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• T-actual
Actual temperature at the time the section was made
• T-error
Alarm temperature at the time the section was made
• Set section thickness
Set section thickness at the time the section was made
• Actual section thickness
Actual section thickness at the time the section was made
• Dehydration,
Time when dehydration started / finished.
Instructions for use, 6v3, RevB – 01/2013
• Comment
Comments can be entered by the user
• Knife holder position,
Knife holder position at the time the section was made
6.Software
Leica CM3600 XP – Cryomacrotome
81
6.Software
6.10.3 Event table
If you click on a main study or substudy in the tree diagram, the following
indication will be displayed in the "Event table":
The table is divided into the following columns:
• No.
Indication of the running event number automatically allocated by the
application.
• Date/time
Indication of date or time when the event occurred.
• User
Indication of the user who was logged in when the event occurred.
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• Event
Indication of the event message.
Red: procedure stopped
Green: procedure started
Black: parameter modified, e.g. section thickness, sledge speed.
Instructions for use, 6v3, RevB – 01/2013
6.11 Photo mode
6.Software
Clicking on the photo symbol activates or deactivates the
"Photo mode" and moves the microtome sledge to the mechanical limit stop. When active, the symbol will light up in
green.
The photo mode enables you to position the specimen or rather the
microtome sledge exactly for photos to be taken after each section.
In "Parameter settings" the "Photo position dwell time" and the "Photo
position triggering time" can be selected.
Photo position dwelling time
To define how long the microtome sledge will remain stopped in the
camera position.
Photo position triggering time
Time until the camera will actually take the photo.
For further information, refer to chapter 6.5.1.
6.12 Screen printout
Leica CM3600 XP – Cryomacrotome
Clicking on the "Screen printout" symbol creates a printout of
the current screen on a defined printer. For further information, refer to chapter 6.5.3.
83
6.Software
6.13 Remote inquiry
Clicking on the "Remote inquiry" symbol opens the dialog box
"Safety check - initialization".
Carry out the required safety query and subsequently confirm each safety
query by mouse click on the corresponding check box. Having confirmed
all safety queries, click on OK.
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The pcAnywhere application will be started. The pcAnywhere window
opens up.
Note:
The latest pcAnywhere version will
always be displayed.
The control PC of the CM3600 XP is equipped with a modem enabling
Leica Service Support in case of an instrument malfunction to access
directly the control software. The modem connection will be set up by the
pcAnywhere software installed on the PC.
Instructions for use, 6v3, RevB – 01/2013
6.Software
To establish a connection proceed as follows:
1. Doubleclicking on Icon "CM3600 XP" establishes the connection. The
"pcAnywhere window waiting" window will open up. Click on CANCEL
to stop the connection from being established.
After the connection has been successfully established, the window
"Remote Connection Attempted" opens up.
3. Click on YES to enable access to the PC of the Leica CM3600 XP. Click
on NO to deny access.
The icon in the Systray list indicates whether a connection has successfully been established or not.
Leica CM3600 XP – Cryomacrotome
Access to the PC of the Leica CM3600 XP must be confirmed
with "YES" within the defined time - otherwise the connection will be severed.
For instructions on how to install, configure and operate
pcAnywhere, please refer to the manual supplied together
with the software.
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6.Software
6.14 Help
6.15 Saving
6.16 Printing labels
Clicking on the "Help" symbol starts Adobe Acrobat Reader
and opens the manual in pdf format.
Click on the "Saving" symbol to save the section data.
"Saving" must be clicked on as a first step to enable section documentation via the foot switch. For subsequent steps, refer to chapter 6.17.
Clicking on the label printing symbol opens the "Label printing"
window. When activated, the icon will light up in green.
When the label printing feature is activated, a label will be printed every
time a section has been completed.
Please see chapter 6.5.3 "Configuration" on how to select the printing
parameters and the printer for label printing.
®
6.17 Foot switch
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Without activating the "Saving icon", no labels can be
printed.
Clicking on this symbol activates the foot switch connected to
the instrument, i.e. documentation of the last section carried
out will be saved,when the foot switch is pressed.
Without first clicking on the "Saving" icon, the foot switch
cannot be used.
Instructions for use, 6v3, RevB – 01/2013
6.18 User log-in / log-out
6.19 Quitting the application
6.Software
Clicking on the symbol logs off the user currently logged in.
Click again to open the "Start-and-login" window. For further
information, refer to chapter 6.2.
Logging off does not automatically stop or delete the actions
and settings initiated in the application.
Clicking on the "Quit" symbol closes the application.
When quitting the application, all settings made are reset.
Any application steps still in progress are terminated.
Leica CM3600 XP – Cryomacrotome
87
7.Operating the Leica CM3600 XP
To ensure proper operation of the Leica CM3600 XP as well
as use of the specimen stages and the specimen blocks
themselves, we strongly recommend to attend a Leica
application training.
7.1Check list
The checklist below provides an overview on how to successfully
operate the Leica CM3600 XP.
We recommend that you make a copy of this checklist and
attach it to an instrument surface where it is clearly visible
to ensure that all points of the list are observed.
1. Switch the instrument on.
For further information, refer to chapter 7.2.
2. Start the software.
For further information, refer to chapter 7.3.
3. Select desired chamber temperature for sectioning
For further information, refer to chapter 7.4.
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4. Insert the specimen stage.
For further information, refer to chapter 7.5.
5. Insert the knife.
For further information, refer to chapter 7.6.
6. Set the trimming parameters.
For further information, refer to chapter 7.7.
7. Change the knife.
For further information, refer to chapter 7.6.
8. Set the sectioning parameters.
For further information, refer to chapter 7.8.
9. Dehydrate the section.
For further information, refer to chapter 7.9.
Instructions for use, 6v3, RevB – 01/2013
7.2Switching the instrument on
Proceed as follows:
1. Switch on the mains switch. For further information, refer to
chapter 5.3. The refrigeration and control unit is activated.
2. Switch on the PC and peripherals. For further information, please
refer to the manual of the PC.
7.3Starting the software
Proceed as follows:
1. Carry out the software "Start and log-in" procedure. For further
information, refer to chapter 6.1.
7.Operating the Leica CM3600 XP
If the Leica CM3600 XP had been completely switched off,
an initialization procedure must be carried out. For further
information, refer to chapter 6.3.
7.4Setting the chamber temperature
Proceed as follows:
1. Open the "Parameter settings" window and select the desired
chamber temperature for sectioning. For further information, refer
to chapter 6.5.1.
Leica CM3600 XP – Cryomacrotome
89
7.Operating the Leica CM3600 XP
7.5Specimen stages
This chapter provides instructions on how to insert the knives.
There are three different types of specimen stages:
• Special holder, orientable, with ball-and-socket joint,
• Specimen stage, orientable, with ball-and-socket joint,
90
• Specimen stage, non-orientable.
Instructions for use, 6v3, RevB – 01/2013
7.Operating the Leica CM3600 XP
When inserting the specimen stages, bear in mind the following:
• Prior to sectioning, the specimen stage should have been stored
inside the cryochamber for at least 24 hours, to make sure it has the
correct sectioning temperature (approx. -20°C).
• To mount the entire block (specimen block on specimen stage) onto
the sledge, first bring the knife holder to its upper limit position. For
further information, refer to chapter 6.4.5.
• The total height of the specimen stage plus specimen block must not
exceed 70mm.
Since there is a considerable risk of injury when inserting the specimen
stage/block, please observe the following safety measures:
Prior to any work involving the knife, microtome or inside the
cryochamber, activate the emergency stop switch. For further
information, refer to chapter 3.4.1.
Leica CM3600 XP – Cryomacrotome
Prior to any work involving the knife, microtome or inside the
cryochamber, swing the knee lever upwards. For further
information, refer to chapter 3.4.2.
For any work involving the knife, microtome or inside the
cryochamber, wear the special protective gloves provided.
For further information, refer to chapter 5.2. "Standard
delivery"
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7.Operating the Leica CM3600 XP
7.5.1 Inserting the specimen stage, orientable, with ball-joint
To insert the specimen stage, orientable, with ball-and-socket joint
proceed as described below. The special holder, orientable, with ball
joint is inserted the same way.
Tools required:
• Fork wrench (size 17).
Proceed as follows:
1. Use the knee lever to move the sledge to the right-side reversal point.
For further information, refer to chapters 3.2.2 and 6.4.9.
2. Comply with the safety instructions provided in chapter 7.5.
3. Open the window. For further information, refer to chapter 3.4.3.
4. Place specimen stage (1) on T-piece (2).
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5. Rotate specimen stage (1) 90° clockwise.
6. Orient the specimen stage (1) by eye.
7. Tighten screw (3).
8. Check specimen stage (1) for correct orientation and proper tightening.
Instructions for use, 6v3, RevB – 01/2013
7.Operating the Leica CM3600 XP
121
31
Leica CM3600 XP – Cryomacrotome
93
7.Operating the Leica CM3600 XP
7.5.2 Inserting the specimen stage, non-orientable
Tools required:
• Allen key (size 6).
Proceed as follows:
1. Use the knee lever to move the sledge to the right-side reversal point.
For further information, refer to chapters 3.4.2 and 6.4.9.
2. Comply with the safety instructions provided in chapter 7.5.
3. Open the window. For further information, refer to chapter 3.2.3.
4. Remove screw (1).
5 Lift off T-piece (2) and support ring (3).
6. Remove screws (4) and washers (5) located on the right and left side
of the sledge.
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7. Insert specimen stage, non-orientable (6) and orient by eye.
8. Put washers (5) in place and tighten screws (4) on the right and left
side of the sledge.
9. Check specimen stage, non-orientable (6) for correct orientation and
proper tightening.
Instructions for use, 6v3, RevB – 01/2013
7.Operating the Leica CM3600 XP
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6
35
4
5
Leica CM3600 XP – Cryomacrotome
95
7.Operating the Leica CM3600 XP
7.6Knife
This chapter provides instructions on how to insert the knives.
Two types of knives can be used in the CM3600 XP:
• Standard knives
• Disposable blade holder with disposable blade
96
Since there is a considerable risk of injury, please be sure to comply with
the following safety instructions:
Prior to any work involving the knife, microtome or inside
the cryochamber, activate the emergency stop switch. For
further information, refer to chapter 3.4.1.
Prior to any work involving the knife, microtome or inside
the cryochamber, swing the knee lever upwards. For further
information, refer to chapter 3.4.2.
For any work involving the knife, microtome or inside the
cryochamber, wear the special protective gloves provided.
For further information, refer to chapter 5.2. "Standard
delivery"
Instructions for use, 6v3, RevB – 01/2013
7.Operating the Leica CM3600 XP
Leica CM3600 XP – Cryomacrotome
97
7.Operating the Leica CM3600 XP
7.6.1 Inserting standard knives
To insert a standard knife, proceed as follows.
Tools required:
• Allen key (size 4).
Proceed as follows:
1. Use the knee lever to move the sledge to the right-side reversal point.
For further information, refer to chapters 3.2.2 and 6.4.9.
2. Comply with the safety instructions provided in chapter 7.6.
3. Open the window. For further information, refer to chapter 3.4.3.
4. Remove screws (1) and remove pressure plate (2).
5. Place knife (3) on support plate (4).
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6. Place pressure plate (2) on knife (3).
7. Tighten screws (1) slightly.
8. Adjust the knife (3) using the positioning tool (5). Attach the positioning
tool (5) to the knife holder (6) as shown. The two plastic pegs (5a)
press the knife (3) into the correct position.
9. Tighten screws (1).
10. Adjust the knife angle. For further information, refer to chapter 7.6.3.
Instructions for use, 6v3, RevB – 01/2013
7.Operating the Leica CM3600 XP
Leica CM3600 XP – Cryomacrotome
99
7.Operating the Leica CM3600 XP
7.6.2 Inserting the disposable blade holder with disposable blade
To insert the disposable blade holder with disposable blade proceed as
described below.
Tools required:
• Allen key (size 4).
• Allen key (size 2.5).
Proceed as follows:
1. Use the knee lever to move the sledge to the left-side reversal point.
For further information, refer to chapters 3.4.2 and 6.4.9.
2. Comply with the safety instructions provided in chapter 7.6.
3. Open the window. For further information, refer to chapter 3.4.3.
4. Remove screws (1) and remove pressure plate (2).
5. Place disposable blade holder (3) on support plate (4).
6. Place pressure plate (2) on disposable blade holder (3).
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7. Insert screws (1) and tighten.
8. Loosen screws (3a) of the disposable blade holder (3).
9. Insert disposable blade (5). The disposable blade (5) is in correct
position, when the entire blade back (5) fits close to the limit stop of
the disposable blade holder (3).
10. Tighten screws (3a) of the disposable blade holder (3).
11. Loosen screws (1).
8. Adjust the disposable blade holder (3) using the positioning tool (6).
Attach the positioning tool (6) to the knife holder (7) as shown. The two
plastic pegs (6a) press the disposable blade holder (3) into the correct
position.
9. Tighten screws (1).
10. Adjust the knife angle. For further information, refer to chapter 7.6.3.
Instructions for use, 6v3, RevB – 01/2013
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