Leica ST5020 User Manual

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Instructions for Use
Leica ST5020 V1.9 English - 12/2012 Order No. 14 0475 80101 RevD Always keep this manual together with the instrument. Read this Instructions for Use carefully before working with the instrument.
Leica ST 5020
Multistainer
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NOTE
The information, numerical data, notes and va­lue judgments contained in this manual repre­sent the current state of scientific knowledge and state-of-the-art technology as we under­stand it following thorough investigation in this field. We are under no obligation to update the pre­sent manual according to the latest technical developments, nor to provide our customers with additional copies, updates etc. of this ma­nual. For erroneous statements, drawings, technical illustrations etc. contained in this manual we exclude liability as far as permissible according to the national legal system applicable in each individual case. In particular, no liability whatsoever is accepted for any financial loss or consequential damage caused by or related to compliance with statements or other informa­tion in this manual. Statements, drawings, illustrations and other in­formation as regards contents or technical de­tails of the present manual are not to be consid­ered as warranted characteristics of our products.
These are determined only by the contract pro­visions agreed between ourselves and our cu­stomers. Leica reserves the right to change technical specifications as well as manufacturing pro­cesses without prior notice. Only in this way is it possible to continuously improve the technolo­gy and manufacturing techniques used in our products. This document is protected under copyright laws. Any copyrights of this document are re­tained by Leica Biosystems Nussloch GmbH. Any reproduction of text and illustrations (or of any parts thereof) by means of print, photocopy, microfiche, web cam or other methods – includ­ing any electronic systems and media – requi­res express prior permission in writing by Leica Biosystems Nussloch GmbH. For the instrument serial number and year of manufacture, please refer to the name plate at the back of the instrument.
© Leica Biosystems Nussloch GmbH
Published by: Leica Biosystems Nussloch GmbH
Heidelberger Str. 17 - 19 D-69226 Nussloch Germany
Phone: +49 (0)6224 143-0 Fax: +49 (0)6224 143-2 68 Internet: http://www.LeicaBiosystems.com
Leica ST5020
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Table of Contents
1. Important information ................................................................................................................ 6
1.1 Symbols used in this manual ............................................................................................................ 6
1.2 Designated use ................................................................................................................................... 6
1.3 Qualification of personnel ................................................................................................................. 6
1.4 Instrument type ................................................................................................................................... 6
2. Safety ............................................................................................................................................ 7
2.1 Safety instructions ............................................................................................................................. 7
2.2 Warnings ............................................................................................................................................. 7
3. Instrument components and specifications ....................................................................... 10
3.1 Overview - Instrument components .............................................................................................. 10
3.2 Instrument specifications ............................................................................................................... 12
3.3 Standard delivery - packing list ..................................................................................................... 13
3.4 Technical Data .................................................................................................................................. 14
3.5 Container system .............................................................................................................................. 16
4. Setting up the instrument ....................................................................................................... 17
4.1 Installation site requirements ......................................................................................................... 17
4.2 Installing the instrument .................................................................................................................. 17
4.3 Tap water supply connection ......................................................................................................... 18
4.4 Installing the oven (optional) .......................................................................................................... 21
4.5 Connecting the air evacuation hose (optional) ........................................................................... 24
4.6 Inserting the activated carbon filter .............................................................................................. 25
4.7 Leveling the instrument ................................................................................................................... 25
4.8 Electrical connection ....................................................................................................................... 27
4.9 Alarm functions................................................................................................................................. 28
4.10 Transport ........................................................................................................................................... 28
5. Operation ................................................................................................................................... 29
5.1 Switching the instrument on ........................................................................................................... 29
5.2 Setup checklist ................................................................................................................................. 30
5.3 Touch screen functions .................................................................................................................. 31
5.3.1 User interface - overview ............................................................................................................... 31
5.3.2 Data entry .......................................................................................................................................... 34
5.3.3 Access levels .................................................................................................................................... 36
5.3.4 The main menu.................................................................................................................................. 37
5.4 System SETUP................................................................................................................................... 38
5.4.1 User interface ................................................................................................................................... 39
5.4.2 Alarm .................................................................................................................................................. 40
5.4.3 Password allocation ........................................................................................................................ 42
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Instructions for Use, V1.9, RevD - 12/2012
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Table of Contents
5.4.4 Set date/time ..................................................................................................................................... 43
5.4.5 Movement .......................................................................................................................................... 44
5.4.6 View and print ................................................................................................................................... 45
5.4.7 Reagent list ........................................................................................................................................ 46
5.4.8 Station options .................................................................................................................................. 49
5.4.9 Calibration dialog.............................................................................................................................. 50
5.4.10 Data backup ...................................................................................................................................... 51
5.5 Instrument status.............................................................................................................................. 53
5.5.1 Station buttons .................................................................................................................................. 54
5.5.2 Station types ..................................................................................................................................... 54
5.5.3 Select station type............................................................................................................................ 56
5.5.4 Change station type ......................................................................................................................... 58
5.6 Staining programs ............................................................................................................................ 59
5.6.1 Creating programs............................................................................................................................ 60
5.6.2 Defining the program steps ............................................................................................................ 61
5.6.3 Assigning a clip color ...................................................................................................................... 66
5.7 Programs in process ........................................................................................................................ 68
5.8 Staining .............................................................................................................................................. 69
5.8.1 Loading the racks ............................................................................................................................. 69
5.8.2 Starting programs............................................................................................................................. 70
5.8.3 Interrupting a staining program ..................................................................................................... 72
5.8.4 Finishing programs ........................................................................................................................... 73
6. Cleaning and maintenance .................................................................................................... 75
6.1 Cleaning the instrument .................................................................................................................. 75
6.2 General maintenance ...................................................................................................................... 76
6.3 Preventative maintenance schedule ............................................................................................77
7. Troubleshooting ....................................................................................................................... 78
7.1 General ............................................................................................................................................... 78
7.2 Correcting errors .............................................................................................................................. 78
7.3 Power failure ..................................................................................................................................... 78
7.4 Replacing the secondary fuses ..................................................................................................... 80
8. Warranty and service .............................................................................................................. 82
9. Appendix .................................................................................................................................... 83
9.1 Container Map .................................................................................................................................. 83
9.2 Optional accessories ....................................................................................................................... 85
10. Information for the People´s Republik of China .................................................................87
Leica ST5020
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1. Important information

1.1 Symbols used in this manual and their meaning

(5)
ENTER
Warnings appear in a grey box and are marked by a warning triangle .
Notes, i.e. important user information ap­pear in a grey box and are marked by an information symbol .
Flammable solvents and reagents are marked with this symbol.
Instrument surfaces which become hot during operation are marked with this symbol.
Figures in brackets refer to item nos. in drawings.
Function keys to be pressed on the instrument touch screen are written in bold-print capital letters.
• The instrument may be operated only ac­cording to the instructions contained in this manual.
Any other use of the instrument
is considered improper!
To prevent damages to the instrument and specimens, only those accessories and spare parts which have been authorized by Leica may be installed or used with the instrument.

1.3 Qualification of personnel

The Leica ST5020 may be operated only by trained laboratory personnel.
• The instrument may be operated only ac­cording to the instructions contained in this manual.

1.2 Designated use

The Stainer Leica ST5020 is an automated stain­er for the preparation of histological and cyto­logical routine stainings.
It is designed for use in pathology laboratories, and only for performing the following tasks:
Staining of thin sections of tissue specimens or of cytological samples, attached to micro­scope slides
6

1.4 Instrument type

All information provided in this manual applies only to the instrument type indicated on the title page. A name plate indicating the instrument se­rial number is attached to the back of the in­strument.
Instructions for Use, V1.9, RevD - 12/2012
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Make sure to comply with the safety instructions and warnings in this chapter. Make sure to read these instructions, even if you are already familiar with the operation and use of other Leica products.

2.1 Safety instructions

2. Safety

This Instructions for Use includes important in­formation related to the operating safety and maintenance of the instrument and it is an im­portant part of the product.
If additional requirements on acci­dent prevention and environmental protection exist in the country of op­eration, this Instructions for Use must be supplemented by appropriate in­structions to ensure compliance with such requirements.
Material safety data sheets can be obtained from the supplier of the chemicals. They are also available on the Internet: http://www.msdsonline.com
The protective devices on both instrument and accessories may neither be removed nor modified. Only authorized and qualified service personnel may repair the instrument and access the instrument’s internal components.
This instrument has been built and tested in ac­cordance with the following safety regulations on electrical measuring, control, regulating and laboratory devices.
In order to maintain this condition and to ensure safe operation, the operator must observe the instructions and warnings contained in this In­structions for Use.
For current information about applicable standards, please refer to the CE declaration of conformity on our Internet site:
www.LeicaBiosystems.com

2.2 Warnings

The safety devices installed in this instrument by the manufacturer only constitute the basis for accident prevention. Primarily responsible for accident-free operation is above all the institu­tion which owns the instrument and, in addition, the designated personnel who operates, ser­vices or repairs the instrument. To ensure trouble-free operation of the instrument, make sure to comply with the following in­structions and warnings.
Leica ST5020
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2. Safety
Warnings - Markings on the instrument itself
Markings on the instrument showing the warning triangle indicate that the correct Instructions for Use (as defined in this manual) must be followed when operating or re­placing the item marked. Failure to adhere to these instructions may result in an accident, personal injury, damage to the instrument or accessory equipment.
Some instrument surfaces, which become hot during operation are marked with this warning label. Touching these surfaces may cause burns.
Warnings - Transport and Installation
The instrument may only be transported in an upright position. Four people are needed to lift / carry the instrument. Install the instrument on an even laboratory bench which must be absolutely level. Do not expose the instrument to direct sunlight (windows). The instrument MUST be connected to an earthed mains power outlet socket. The instru­ment must not be connected to an extension cord without protective earth conductor. The instrument will automatically adjust to the required voltage and frequency at the place of installation. If new ovens are installed, they must be adjusted to the voltage and frequency required at the installation site. The instrument must be set up in a well ventilated area, free from any ignition sources. The chemicals to be used in the Leica ST5020 are both flammable and noxious. Do not op­erate the instrument in rooms with explosion hazard. If there is a significant difference in temperature between the warehousing and the in­stallation site of the instrument and if at the same time there is a high air humidity level, condensation water may form. In this case, a waiting period of at least two hours must be observed before the instrument is switched on. Failure to adhere to this waiting period may result in damage to the instrument.
Warnings -handling reagents
Be careful when handling solvents! Always wear rubber gloves and safety goggles when handling the chemicals used in this instrument. Reagents used for tissue infiltration can be both toxic and/or flammable. Dispose of waste solvents with care according to local regulations and the waste man­agement policy of the company or institution.
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Instructions for Use, V1.9, RevD - 12/2012
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Warnings - Operating the instrument
The Leica ST5020 may only be operated by trained laboratory personnel, according to its designated use and per the present Instructions for Use. In case of emergency switch off mains and unplug the power chord. While working with reagents (filling / emptying the reagent stations, working on the in­strument while the lid/s is/are open) appropriate protective gear (lab coat, gloves, safety goggles) must be worn. Make sure to operate the instrument either with the activated carbon filter or with the ex­haust air hose. Even when the instrument is operated according to its designated use, hazardous solvent fumes develop, which are damaging to the operator’s health and do also pose a risk of fire! Risk of fire, when working with an open flame (Bunsen burner) immediately next to the instrument (solvent fumes)! - Therefore, keep a safety distance of 2 meters! If a staining program is to be interrupted for an extended period of time, do not leave any slide racks in the tap water stations, in order to prevent them from drying out.
Warnings - Cleaning and maintenance
Prior to each maintenance and/or cleaning, switch the instrument off and disconnect mains power. Do not clean the instrument with solvents containing acetone or xylene. No liquid may be spilled into the internal components of the instrument - neither during op­eration nor during cleaning.
When working with cleaning detergents, comply with all safety instructions by the manu­facturer of the product and the laboratory management policy. Wash the tap water and reagent stations in the dishwasher at a temperature of max. +65°C (149 °F). Use a standard detergent for laboratory dishwashers. At any rate avoid washing the stations at higher temperatures, as the stations may be­come deformed!
Spilled solvents (reagents) have to be wiped away immediately! - In case of long-term ex­posure, the lid surfaces are only conditionally resistant to solvents! To clean the lids, control panel and housing, use mild household detergents; - see safety instruction above for non-appropriate ingredients!
Caution with sequences which involve an oven at the initial step. In this case the loading unit, out of which the specimen holder is removed via the transport arm, must NOT be filled with an inflammable reagent (e.g. xylene). As the oven temperature is up to 80°C (176 °F), the reagent may ignite and cause damage to the device and to the samples.
For the same reason, steps conducted INSIDE an oven must never be carried out from a reagent station with inflammable reagents.
2. Safety
Leica ST5020
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3. Instrument components and specifications

3.1 Overview - Instrument components

Activated
carbon filter
Single (Double)
Transfer arm Lid
carrier
Oven
modules
Wash
stations
Reagent
container
Color touch
screen
Transfer to Coverslipper Leica CV5030
10
(optional)
Mains
switch
Load
drawer
Exit
drawer
Slot for
PCMCIA
card
Fig. 1
Instructions for Use, V1.9, RevD - 12/2012
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Rear of instrument
Fan
electronic
Data
connections
Power supply
inlet
(electronic)
Power supply
outlet
3. Instrument components and specifications
Mains
Power supply
inlet
Secondary
fuses
adjustable
foot
Container map
Wash stations
Wash station DI-water
Reagent container
Cover for
Oven-Modules
Transfer to
Coverslipper
(optional)
Drain hose
12 3 456 7 89101112 37383940
25
Exhaust air duct
181716151413 2322212019 24
29282726 33323130 363534
Drain outlet
DI-Water inlet
Station 7
Oven-Modules
Color touch
Water inlet
Stations 8-12
screen
Fig. 2
Leica ST5020
Exit drawer
Load drawer
Fig. 3
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3. Instrument components and specifications

3.2 Instrument specifications

High specimen throughput (at maximum 12 racks simultaneously)
Simultaneously processing of multiple different programs
Color TFT-Touch screen
Graphical and intelligent user Interface
Context-sensitive On-line Help
Graphical process representation on color screen.
Reagent Management System.
Multilingual.
Maximum of 40 stations.
Load drawer with max. 4 stations.
Exit drawer with max. 4 stations.
Maximum of 6 wash stations, 2 different water sources possible. (individually valve-controlled)
TM
CodeRack
Overflow Protector (sensor) in stainless steel sink.
Integrated fume control system with external hose/filter.
Programmable Slide Rack for automatic rack start.
Optional Accessories
Oven modules max. +65°C and up to 4 stations.
Heated reagent stations (35 - 70°C max.), max. 2,
Special Stain Kit. (modified container with reduced reagent volume and racks).
System upgrade for Coverslipper integration. (automated staining and coverslipping without operator interaction).
Air evacuation hose.
Slide rack (plastic).
Adapter for racks from other manufacturers.
To prevent damages to the instrument and specimens, only those accessories and spare parts which have been authorized by Leica may be installed or used with the instrument.
12
Instructions for Use, V1.9, RevD - 12/2012
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3. Instrument components and specifications

3.3 Standard delivery - packing list

The Leica ST5020 standard delivery consists of the following items: 1 Leica ST5020 basic instrument
31 Reagent vessels, assy. (with handles and lids) 14 0475 33659 5 Wash vessels, assy. 14 0475 33660 2 Activated carbon filter 14 0474 32273
1 Set of power cords:
1 Power cord "D" 14 0411 13558 1 Power cord "UK" ST-BU F-5A 14 0411 27822 1 Power cord "USA-C-J" 14 0411 13559
1 Accessory-Kit consisting off: 14 0475 39617
1 Jumper cable - mains 14 0411 34604 3 Reagent vessels, assy. (with handles and lids) 14 0475 33659 1 Set of clips, red, pack of 5 14 0475 33637 1 Set of clips, yellow, pack of 5 14 0475 33633 1 Set of clips, white, pack of 5 14 0475 33632 1 Set of clips, light blue, pack of 5 14 0475 33634 1 Set of slide racks 30, plastic, pack of 5 14 0475 33750 1 Waste water hose, 4 m length 14 0475 35748 1 Hose clamp for waste water hose 14 0422 31972 1 Tap water inlet hose, 2,50 m length, assy. with 3/4” connection for water tap 14 0475 32325 1 ‘V’ strainer 3/4”-40/22 A6 (strainer for inlet hose) 14 0456 36101 1 Threaded nippel 14 0474 33063 2 Gaskets for tap water inlet hose 14 0300 00132 1 Box level 14 0475 37629 1 Special O-ring grease for valves and O-rings (OHA), 25 ml 14 0336 36657
1 PCMCIA Flash Card, with adapter 14 0475 42526
1 Tool set:
1 Screw driver 5.5 x 200 14 0170 10702 1 Allen key, size 3.0, with handle 14 0194 04764 1 Allen key, size 4.0, with handle 14 0194 04782 1 Allen key, size 6.0 14 0194 03959 1 Ring-head wrench, size 13 14 0330 37628 1 Single-head wrench, size 17 14 0330 19641
1 Set of replacement fuses:
4 x T 2.0 A 14 6943 02001 2 x T 2.5 A 14 6943 02501 2 x T 4.0 A 14 6943 04001
1 Instructions for Use Leica ST5020 Multistainer 14 0475 80101
Leica ST5020
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3. Instrument components and specifications

3.4 Technical Data

General
Approvals: The instrument-specific marks are located next to
the identification label
Nominal voltage: 100 V - 120 V +/- 10%
230 V - 240 V +/- 10% Nominal frequency: 50 to 60 Hz Maximum power draw: 1400 VA IEC 1010 classifications: Protective class 1
Pollution degree 2
Overvoltage installation category II:
800 V impulse (120 V systems)
1500 V impulse (240 V systems)
Remote alarm relay: 24 V AC/DC, maximum 2 A
Connection:
potential-free contact
(can be operated both as normally open and as
normally closed circuit)
Primary fuses: Fa. Schurter: type FST, mains power inlet 2 x T 8 A
Secondary fuses: Melting fuse, Ø 6.3x32 mm
Type: Schurter FST
F1: T 2.0 A
F2: T 2.0 A
F3: T 2.5 A
F4: T 4.0 A
Operating temperature range: 15 °C to 40 °C Relative humidity: 10% to 80%, non-condensing
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Instructions for Use, V1.9, RevD - 12/2012
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3. Instrument components and specifications
Dimensions and weight
Basic instrument (W x D x H), in mm: 1060 x 750 x 540 Dry weight, unpacked: ca. 90 kg Weight, packed: ca. 110 kg
Capacity data
Specimen slide throughput: depending on the program-structure Loading capacity: max.12 slide racks (with 12 different Programs)
Slide rack capacity: 30 specimen slides Total number of stations: 40 (36 + 4 Oven) Total number of reagent stations: max. 34 Reagent container volume: 450 ml Number of wash stations: max. 5 and 1 DI-water (optional) Oven (optional): 2 or 4 Oven chamber temperature: 40 °C to 70 °C or 104 °F to 158 °F Incubation time setting: 0 sec. up to 23 hours, 59 min., 59 sec. Load/unload stations: max. each 4, min. each 1 Permanent memory capacity: max. 50 Programs, up to 40 program steps each Integration: connection to Leica CV5030 Coverslipper (optional)
Leica ST5020
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3. Instrument components and specifications

3.5 Container system

Reagent container
The Reagent containers can be individually removed for filling. For use, fill the reagent containers to the line marked on the inside
6
(approx. 450 ml capacity) and place into position in the instrument consis-
1
3
tent with the programs you wish to run. Ensure that the reagent containers are correctly seated and that the
handles (1) are over to the side and will not obstruct slide rack movement. Lids (6) are provided to reduce evaporation while the reagent containers are not in use.
The Load and Exit drawer containers (E25 and L36) can be filled with a re­agent if desired. However, the instrument will not control the immersion time in these sta­tions.
Wash stations
The wash system consists of five (optional six) wash stations each ca­pable of holding one slide rack. Water enters the wash station through a connection piece (2) in the base and exits from the overflow lip (3) at the top left hand edge.
16
Wash stations have a locating pin (4) and can only be inserted one way. Take care when fitting or removing wash stations as excessive force may damage the O-ring (5) used as a seal. Lubricate the O-ring seal before fitting a wash station.
To use the wash system, slowly turn the laboratory tap on fully. The flow control valve in the Leica ST5020 will limit the total water flow in the wash stations to 1.6 liters/minute/station.
If the water flow drops below this level for any reason the
4
2
5
Fig. 4
wash period specified in the program may have to be extended.
Instructions for Use, V1.9, RevD - 12/2012
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4.1 Installation site requirements

4. Setting up the instrument

Stable, exactly horizontal laboratory bench with even surface of a minimum width of 1.60 m and minimum depth of 0.80 m.
Tap water supply located a maximum of 2.50 m and waste water drain pipe a maximum of
2.00 m away from the corresponding in-/out­lets at the rear panel of the instrument.
• If the instrument is to be operated with air evacuation hose, a fume cupboard at a dis­tance of maximum 3.50 m from the instru­ment is required. Alternative: operation with activated carbon filter.
Sufficient space (ca. 0.90 m) above the labo­ratory bench for opening / closing the instru­ment lid without any problem.

4.2 Installing the instrument

Virtually vibration-free floor.
Stable ambient temperature between +10 °C and +40 °C.
Relative air humidity of maximum 80%, non­condensing.
Do not place near instruments which might be sources of vibration.
The chemicals to be used in the Leica ST5020 are both flammable and noxious. The instrument must be set up in a well ventilated area, free from any ignition sources. Do not operate the instrument in rooms with explosion hazard.
• To lift, grip the instrument by the carrying handles (1, Fig. 5).
Leica ST5020
Four people are required to lift and/ or carry the instrument, as the in­strument weighs a total of approx. 95 kg.
Place the instrument onto the bench.
• Unscrew the carrying handles (remove
1
2
screws (2) with Allen key, size 6.0) and store away.
Pull off plastic cover.
Fig. 5
• Check whether all accessories have been delivered as per your order.
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4. Setting up the instrument

4.3 Tap water supply connection

Water filter
In addition to the filter sieve supplied (item 3 in installing a sediment filter between the water extraction outlet and ST5020, to guarantee that the instrument is only operated with clean wa­ter.
This sediment filter should have the following properties: Filter fineness: 25 μm Rate of flow: approx. 10 l/min (with 5 wash stations) Pressure constancy: 10 bar Connection to the filter output: 1/2“ external thread
Connecting the tap water inlet hose
Unpack the tap water inlet hose - mind the two gaskets (4).
7
5
Fig. 6) Leica recommends
This filter insert must be checked and cleaned regularly. If the filter insert is very dirty it must be replaced.
3
4
6
Fig. 6
18
7
Insert one gasket (4) into threaded fitting (6). Store away the remaining gasket(s).
Insert strainer (3) into union nut (5) (see
Fig. 6) which is screwed onto
the water tap. Do not insert any further gaskets, as the strainer acts also as a seal.
Instructions for Use, V1.9, RevD - 12/2012
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Instrument rear panel
- tap water inlets
10
9
4. Setting up the instrument
• Screw tap water inlet hose (7 in Fig. 8) for tap water stations 8 - 12 onto water tap and insert the other end into inlet (8 in Fig. 7) .
8
If station no. 7 (Fig. 3) will also be used as a tap water station, connect a second tap water inlet hose (optional accessory) to inlet (9).
Fig. 7
Instrument rear panel
water in-/outlets
7
Leica ST5020
10
12
Inlet (9) only provides water (or any other medium supplied via a sepa­rate connection) to station no. 7. To use station 7 as a water station, a wash vessel must be inserted and station 7 must be defined as a ‘tap water’ or ‘fully-de-ionized water’ station (DI water station) in ‘stations options’. (see also Chapter 5.5.3)
11
Fig. 8
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4. Setting up the instrument
7
13
15
14
Connecting the waste water hose
Outlet connection piece (10) can be turned to point into different directions, depending on whether the drain water pipe is located to the left or to the right of the instrument.
• To adjust the connection piece, loosen screw (11) of hose clamp (12) sufficiently so that the connection piece (10) can be turned. Adjust the connection piece as desired (al­ways with the opening pointing slightly downwards) and retighten screw (11).
Turn screw (15) to the left (use screwdriver) until hose clamp (14) opens wide enough to be slid over waste water hose (13).
20
Fig. 9
Important! When installing the drain hose al­ways make sure there is a sufficient descending gradient from the outlet (connection piece (10)) on the instru­ment to the drain pipe!
• Fit waste water hose (13) onto outlet con­nection piece (10) and position hose clamp (14) as shown in
Fig. 9.
Turn screw (15) to the right until hose (13) is secured tightly on connection piece (10) by hose clamp (12).
Insert waste water hose (13) into drain pipe and secure in position.
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4. Setting up the instrument

4.4 Installing the oven (optional)

15
16
Voltage setting
100 - 120 V
23
Voltage setting
230 - 240 V
Rear panel - oven
24
19
21
25
Fig. 11
• Take the oven kit out of the box and verify
whether it is complete.
The following parts must be in­cluded:
20
15 - Oven module 16 - Paraffin collecting tray
18
22
17 - Cover 18 - Screws 19 - Washers 20 - Screwdriver 21 - Allen key, size 2.5 22 - Allen key, size 4.0
17
Insert paraffin collecting tray into corresponding opening in oven module (possible only in one direction, as shown here).
Fig. 10
• Check the voltage selector setting and ad-
just if necessary.
Important! The voltage selector switch must be set to the same mains voltage as the instrument.
To adjust the voltage selector setting, insert screw driver (20) into gap (23) and turn care­fully until the white point above the correct voltage indication is located underneath the white triangle.
115 means: Instrument voltage 100 -120 V. 230 means: Instrument voltage 230 - 240 V.
Leica ST5020
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4. Setting up the instrument
27
Important!
Prior to taking any further installa­tion steps, switch the instrument off and unplug from mains.
29
28
26
29
30
Cover panel (26) must be removed from the right inner wall of the instrument, so that the transfer arm can access the oven stations.
27
To do so, remove six screws (27) (Allen key, size 2.5) and remove cover panel (26).
Store screws and cover panel in safe place for further use.
Fig. 12
Remove cover panel (28) located to the right of the electrical connections at the rear wall of the instrument.
• To remove panel (28), only remove screws (29).
Do not loosen the two screws (30)!
22
29
29
Fig. 13
• Once the oven is installed, attach cover panel (part of oven kit delivery) (17
in Fig. 10)
with four screws (29) in such a way that the voltage selected is visible from the outside.
Instructions for Use, V1.9, RevD - 12/2012
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4. Setting up the instrument
Installing the oven
(continued)
31
15
32
18, 19
Fig. 14
Important! If only one oven is installed, it must be located on the right side (seen from the rear of the instrument).
Place oven on rails (32) and insert.
Keep pushing until the connection pieces of
the oven (positioning pin (24), connector strip (25), see
Fig. 11) lock into the corre-
sponding connections (31) in the instrument.
Next, use the two screws (18) and washers
(19) to secure the oven (15) in the bores pro­vided in the instrument for that purpose.
If a second oven has been ordered, install it
the same way as the first.
Indication prior to
installing the ovens
Leica ST5020
INSTRUMENT STATUS
Indication with ovens installed
Fig. 15
Fig. 16
• Fasten cover (item 17, Fig. 10) so that the
voltage range selected for the oven (15) is the same as the engraved voltage range.
• Plug the instrument back into mains and
switch on. The oven modules are detected automatically and are displayed accordingly in ‘instrument status’.
Go to ‘stations options’ and set the desired
oven temperature. (See
chapter 5.5.3, page 56 for further de-
tails).
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4. Setting up the instrument

4.5 Connecting the air evacuation hose (optional)

64
65
63
62
61
66
68
63
60
Fig. 17
If the instrument is operated without activated carbon filter, the air evacuation hose must be installed instead. The air evacuation hose is attached to fan hou­sing (68) located at the rear left of the instru­ment. Unpack the components supplied and check for completeness. The package must contain the following items:
60 - Screw driver 61 - Allen key, size 2.5 62 - Hose clamp 63 - Allen screw with washer 64 - Hose connection piece with seal 65 - Air evacuation hose
65
64
67
62
66
• Fasten connection piece (64) with two
screws (63) into tap holes (66) in fan housing (68).
• Turn clamping screw (67) to the left (use
screw driver (60) until hose clamp (62) is loosened far enough so that it can be slipped over the air evacuation hose.
24
Fig. 18
Place air evacuation hose (65) together with hose clamp (62) onto connection piece (64) (see Fig. 18, right).
Tighten screw (67) of hose clamp (62) (turn to the right) to secure the hose.
Instructions for Use, V1.9, RevD - 12/2012
Page 25

4.6 Inserting the activated carbon filter

51
33
4. Setting up the instrument
Important for trouble-free operation:
34
The sealing profiles (33) must fit against the rear wall of the filter housing (34).
Filter - inserted
Fig. 18
Make sure to insert the filter with the correct side pointing upwards: the three arrows on the label (51) located at the right of the filter must point to front.

4.7 Leveling the instrument

Once all accessories are installed (don’t forget the rear panel!), move the instrument to its final position.
Prior to leveling the instrument, check whether the bench surface of the laboratory bench where the instrument will be installed is flat and exactly horizontal.
Otherwise, use the box level (standard delivery) to determine the high­est point of the bench. Next, the instrument foot located at the highest point of the bench must be screwed in almost completely (
- Then level the instrument adjusting each foot as needed.
Fig. 19
35
Once the activated carbon fil­ter is inserted, push lever (35) downwards to properly se­cure the filter in the filter housing.
see Fig. 21).
Leica ST5020
25
Page 26
4. Setting up the instrument
instrument feet
Bring the instrument to an exact horizontal posi­tion by screwing the ad­justable feet in / out as needed.
Adjustable
To do so, proceed as follows:
Remove all vessels located in stations 1 - 24 so that the vessel holder frames can be used to support the box level for measuring pur­poses.
• All four instrument feet (37) are height-ad­justable. To adjust, place single head wrench, size 13 (standard delivery) onto hexagon bolt (36) and adjust each foot as needed.
36
37
Fig. 21
B
C
39
39
D
38
Abb. 22 shows all four points (A to D) where the box
level must be positioned for leveling the instrument. For leveling, the box level must be placed onto ves­sel holder frame (39). - Do not place the box level elsewhere.
Make sure, all four instrument feet are firmly set on the bench surface once the instrument adjustment has been completed.
For leveling, position box
level (38) alternately in posi­tions (A and B) - see Fig. 22 on the vessel holder frame.
Screw the instrument feet in­ward / outward as needed,
A
gradually bringing the instru­ment into a horizontal posi­tion. Start with the instrument foot located opposite the highest point of the labora­tory bench.
Fig. 22
Finally, place the box level in positions (C und D) to double­check whether the instru­ment is in fact in a horizontal position.
26
Instructions for Use, V1.9, RevD - 12/2012
Page 27

4.8 Electrical connection

The instrument MUST be connected to an earthed mains power outlet socket. The instrument is supplied with a set of country-specific power cords. Make sure to use the appropriate mains cable for the local voltage supply (wall outlet).
Sockets for mains power
supply and data transfer.
Secondary fuses.
50
48
44
45
42
Jumper cable / power cord
connected correctly
for mains power supply
49
47
43
4. Setting up the instrument
All electrical connections are located at the rear of the instrument to the left (Fig. 23).
Power supply
• Connect mains cable to mains power supply socket (42).
Jumper cable (43) connects the mains power supply output (44) to the electronics module input (45).
Data connections
Printer port (47) A suitable printer (and cable) can be recom-
mended by your Leica distributor. If conform­ance to electromagnetic interference stan­dards is essential, a specially shielded printer cable will be required.
Serial port (48) Access for technical service.
• Connection for Leica CV 5030 Cover slipper (49).
Leica ST5020
46
Fig. 23
All interfaces may be used only with devices that have been tested in ac­cordance with EN 60950 and which satisfy the requirements for SELV cir­cuits.
Other connections
Socket for remote alarm system (50)
Secondary fuses (46)
27
Page 28
4. Setting up the instrument

4.9 Alarm functions

Instrument alarm
The instrument alarm is generated from within the Leica ST5020. The instrument alarm is used for all alarm situa­tions.
Remote alarm
This alarm is external to the Leica ST 5020. Any alarm generated in the instrument, no mat­ter of which alarm type, is passed on to the re­mote alarm system, even when the type 1 in­strument alarm is switched off. The remote alarm sound/volume is the same for all alarm types - individual sound and volume settings selected in the ALARM menu (see
chapter 5.4.2) are disregarded.

4.10 Transport

The following measures must be taken if the in­strument is to be transported:
Remove all the racks.
Empty all reagent containers.
Secure the transport arm of the instrument.
• Disconnect the instrument from the supply voltage.
• Detach the water inlet hose and the water drain hose.
• If necessary, detach the air evacuation hose.
Reattach the carrying handles (see
4.2).
If the instrument is transported over longer distances, pack the instrument in its original shipping box and follow the measures for securing it for transport.
Chapter
Connecting a remote alarm device
The remote alarm system which can be optio­nally connected works with a potential-free re­lay. If an alarm is generated, the alarm circuit closes. The remote alarm device connected to the in­strument must be rated at less than 2 amp. A maximum voltage of 24 V AC/DC may be pre­sent. The remote alarm device is connected to the printer via a 6.3 mm-diameter jack connector (optional accessory). For details on how to connect a remote alarm device to the Leica IP, please contact your local Leica sales office or the manufacturer Leica Microsystems Nussloch GmbH directly.
Securing the transport arm:
Change to the Supervisor mode.
Call up the keyboard (e.g. as required for en­tering the password, see
Enter the command “#transport“.
The arm moves down into station 6 where it re­mains and can no longer be moved. After switching the instrument off, it is ready for transport.
Chapter 5.4.3)
28
Instructions for Use, V1.9, RevD - 12/2012
Page 29

5.1 Switching the instrument on

Caution! The instrument MUST be connected to an earthed mains power outlet socket. It is recommended that the Leica ST5020 be plugged into a wall socket that has Ground Fault Circuit Interruption (GFCI) protection - as an additional electrical safeguard.
Before you connect the instrument to the wall socket, make sure the mains switch at the bottom right of the instrument is in position OFF (‘0’).
Connect the mains cable to the wall socket and switch on the mains supply at the wall socket (if applicable).
Switch the mains switch ON (‘I’).

5. Operation

When switched on, the instrument will take a few seconds to initialize. During initialization the screen is blue, initialization progress is indicated by a line of white dots.
• After approx. 30 seconds, the graphic sur­face will become visible. The working area is still black. A row of “X“ displays the soft­ware loading in the information line.
Next, the LANGUAGE CHOICE menu (
Fig. 24)
will be shown on the screen for approx. three secs.
Fig.8
If you select a different language (press the corresponding button), the MAIN MENU (Fig. 32, chapter 5.3.4) will be shown next, in the new language selected.
If no changes are made, the INSTRUMENT STATUS menu (
Fig. 25) will open up.
INSTRUMENT STATUS is the standard screen - all functional descriptions in the present
chapter 5 start from INSTRUMENT
STATUS.
Leica ST5020
Fig. 24
Fig. 25
29
Page 30
5. Operation

5.2 Setup checklist

Once the instrument is ready to be switched on, all menus listed below must be accessed and the necessary parameters be properly selected. The Supervisor mode must be active to have access to all menus. For detailed advice on how to select individual parameters, refer to the on-line help feature.
Screen
Press button
Parameter settings
Select a language - either when switching the in­strument on or in the LANGUAGE CHOICE menu. In USER INTERFACE, set parameters as required.
Verify whether DATE and TIME are correctly set.
Open the REAGENT LIST menu, check the settings and complete, if necessary.
In INSTRUMENT STATUS, select a STATION TYPE for each station. Allocate the correct reagent to each STATION. Reagents can be allocated either when creating the programs or in the STATION DETAILS menu. Be sure to fill the reagent containers with the cor­rect reagents (as allocated)!
Create the PROGRAMS needed. Existing programs can be copied and modified.
30
In MOVE, select the number of dips and the speed of the transfer arm.
Allocate a CLIP COLOR to each clip.
Select time, quantity and paper format of the daily printouts.
Instructions for Use, V1.9, RevD - 12/2012
Page 31

5.3 Touch screen functions

5.3.1 User interface - overview

The Leica ST5020 Multistainer is programmed and operated via a colored TFT- touch screen.
Basic screen layout
Only those control elements that can actually be ac­cessed by the user are displayed on the screen. The number of accessible control elements depends on the access level selected.
Current
date
Current
time
Instrument
name
Menu
currently
selected
Information
line
Access level
selected
5. Operation
The screen is horizontally divided into three function­al areas:
Status bar
Up one
menu level
Leica ST5020
Area for buttons
displayed depen-
ding on current
menu
Up one level
to main
menu
Switching from
user to supervisor
access level and
back
Operation
Button bar
Fig. 26
On-line help
on current
menu
31
Page 32
5. Operation
Button symbols
Enabled
Disabled
The six buttons described below have the same function in all menus. On the left side of the button bar (
Fig. 26) there will either be the button
BACK To go back to the previous menu.
or the two buttons
CONFIRM To exit the current menu (new entries will be
stored upon exiting).
CANCEL To exit the current menu without storing any
of the modifications made.
PRINT Displayed in menus containing tables and lists.
If pressed, the list selected will be printed immediately. Immediate printing does not affect the daily printout of all protocols (
MENU To go back to the main menu (
see chapter 5.4.6).
see chapter 5.3.4)
HELP The on-line HELP feature can be accessed from
any screen. HELP provides context-sensitive explanations, i.e. help topics displayed will vary depending on the menu HELP is accessed from.
Some button symbols may look differently depending on whether they have been enabled or disabled.
Disabled button symbols appear in a lighter color than enabled ones. They are only shown to complement the menu being displayed, in or­der to avoid mix-ups and to remind the user that the corresponding function has been disabled. They can, however, not be accessed.
32
There are several functions where the user can choose from a number of given parameters. If there are only two parameters available, the parameter currently en­abled is shown on the button. Pressing the button switches to the alter­native parameter. If there is a choice of more than two parameters, the range of available parameters is shown on the button in square brackets. Each time the button is pressed, the next parameter is accessed, start­ing again with the first after the last one in the row has been selected.
Instructions for Use, V1.9, RevD - 12/2012
Page 33
Tables/lists
5. Operation
The program contains numerous tables. The first row of a table contains the headers of
the individual columns. The rows below contain the actual content.
Selected rows appear in blue color (1).
1
Fig. 27
2
3
Fig. 28
When a tabled is accessed, the blue bar is al­ways located in the first content row. If a table is empty, no blue bar is displayed.
Headings of column where parameters can be entered by the user (in supervisor mode) (
Fig.28)
are displayed as buttons (3). In supervisor mode, some tables also contain a number of additional buttons (2), depending on the parameters selectable.
Leica ST5020
The navigation buttons are located at the right border of the screen. Each table contains two navigation buttons for row-by-row scrolling. Each time one of the buttons is pressed, the highlighting bar is moved one row up or down. You can also highlight rows by touching them directly.
For long lists, a set of page-up / page-down buttons will be displayed in addition.
Pressing on of these buttons moves the highlighting bar one entire page up or down; the last (first) row of the current page will be the first (last) row of the new page. If there is no entire page left to the beginning (end) of the table, the new page will be displayed starting with the first row (ending with the last row) of the table with the highlighting bar jumping to the first content row on the page.
Each table contains a PRINT button. If the button is pressed, the current status will be printed out immediately.
33
Page 34
5. Operation

5.3.2 Data entry

Parameters and data can be set / entered several different ways:
Alphanumeric keyboard
4 5
The maximum number of characters to be entered may not be exceeded. The following numbers are predefined:
Reagent names: maximum 20 characters Program names: maximum 20 characters Program abbreviation: maximum 3 characters Passwords: minimum 4 characters, maximum 20 characters.
The following buttons have special functions:
If pressed, button remains locked, all letters will be displayed in capitals. After the first button has been pressed, SHIFT is released and the key­board will return to small letters.
Fig. 29
The alphanumeric keyboard (Fig.
29) resembles a computer key-
board. An entry field (5) and in­structions on what kind of data to enter (4) are located above the keyboard. The amount of charac­ters that can be entered varies, depending on the type of data to be entered. If there is a predeter­mined number of characters to be entered, that number will be displayed in the entry field. The cursor is located on the left.
34
If pressed, button remains locked - all letters will be written in capitals. Press SHIFT LOCK once more to return to small letters.
Press this button to display special characters, above all vowels carrying accents. These can also be displayed in capitals by pressing SHIFT/SHIFT LOCK. After a special character has been selected, the keyboard auto­matically reverts to standard indication.
Instructions for Use, V1.9, RevD - 12/2012
Page 35
Navigation buttons
Numerical keyboard
5. Operation
The navigation buttons have the same function in both keyboard types (numerical, alphanumeric):
Cursor jumps to the left / right border of the entry field.
Cursor is moved one character to the left / right.
Character on the left of the cursor is deleted.
Entry field located above the numeric keypad (left
6
Fig. 30
aligned). Instructions on which parameter to be en­tered (6) are displayed above the entry field. Entry position is marked by cursor, default parameters will be stored. Pressing a numerical key deletes default parameters.
If a figure entered exceeds or falls short of a limit setting, that limit setting will be displayed when CONFIRM in the menu bar is pressed and the entry field will not be exited.
Depending on the type of entry to be made, only a limited number of numeric characters can be en­tered.
• Press CONFIRM or CANCEL to exit the numerical keypad.
Leica ST5020
Press CONFIRM to store entries and go back to the previous menu.
Press CANCEL to go back to the previous menu without storing any new entries.
35
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5. Operation

5.3.3 Access levels

Administrator symbol
User symbol
Fig. 31
The Leica ST5020 may be configured to allow two level of user access.
User access level
Users may run programs and view results. On this level, the USER symbol is displayed in the upper right corner of the touch screen.
Supervisor access level
• Administrators may perform all user func­tions, and additionally create programs and perform the instrument setup functions.
To access supervisor level, press SUPERVI- SOR: the keyboard will be displayed. If a password has been allocated, the keyboard will appear on the screen.
chapter 5.4.3 for details on password
(See allocation). Enter the ‘Admin’ password and confirm. The SUPERVISOR symbol will then be dis­played instead of the USER symbol and the
SUPERVISOR button will be replaced by the USER button.
36
In SUPERVISOR mode, NO programs can be run. Switch to USER mode to start a program. You can only go back to SUPERVI­SOR mode (e.g. to select / change settings) once all running programs have been finished.
The Leica ST5020 may be configured so that all functions are accessible to all staff - effectively the instru­ment is in Supervisor access level the whole time. See chapter 5.4
“System setup“.
Instructions for Use, V1.9, RevD - 12/2012
Page 37

5.3.4 The main menu

After switching the instrument on, the main menu will be displayed only if the language is changed. INSTRUMENT STATUS is actually the standard screen. In all functional descriptions below, INSTRUMENT STATUS is assumed to be the standard screen, all buttons shown start from INSTRUMENT STATUS.
5. Operation
Opens up the main menu from where all program functions can be ac­cessed. The main menu can be accessed directly from almost all functions.
To be able to access all necessary set­tings, the instrument must be operated in SUPERVISOR mode.
Fig. 32
From the main menu, four subordinate menus can be accessed:
INSTRUMENT STATUS see chapter 5.5
STAINING SCHEDULE see chapter 5.7
Leica ST5020
PROGRAMS see chapter 5.6
OPTIONS see chapter 5.4
37
Page 38
5. Operation

5.4 System SETUP

In OPTIONS you find all submenus which
determine what the user interface looks like:
- USER INTERFACE
- CLIP COLOUR
- DATE/TIME
manage the reagents:
- REAGENT LIST
control the print functions (optional)
- VIEW/PRINT
All of the settings for the menus STATION OPTIONS, USER INTERFACE, REAGENT LIST and VIEW/PRINT can be accessed in user mode. All other menus require administrator mode.
Determine speed and number of dips
• determine the station type and allocate reagents:
- STATION OPTIONS
define the dips / transfer speed:
- MOVE
allow user data to be loaded and backed up
- BACKUP
Set user-defined system parameters
Set and control stations
Allocate and control reagents
Detect color of unknown clip and allocate
38
Calibrate screen
Define screen displays and printouts
Backup and read in all user data
Set / control date and time
Fig. 33
Instructions for Use, V1.9, RevD - 12/2012
Page 39
5. Operation

5.4.1 User interface

In this screen you can select:
BRIGHTNESS OF SCREEN
TEMPERATURE MEASURING UNIT
BUTTON CLICK
Two measuring units can be chosen from:
The parameter selected is displayed on the
button, next to the “=“ sign.
←→
Fig. 34
Press the button to switch to the alternative
measuring unit.
Leica ST5020
Language selection
To select between the two languages that are available, one of these two languages always being ‘English’. The second language (default = German) next to English is exchangeable. A PCM-CIA expansion card containing the de­sired language is needed. Switch the instrument off and insert the PCM­CIA card into the slot next to the mains switch. Switch the instrument back on, the new lan­guage will be automatically loaded.
Fig. 35
39
Page 40
5. Operation

5.4.2 Alarm

There are three different types of alarms, each one allocated to certain events. Alarm type 1 can be simply switched off, alarm types 2 and 3 cannot.
Fig. 36
Different sound signals, in several intensity levels, can be allocated to each alarm type.
Alarm type 1:
Alarm 1 is generated when user intervention is required.
Alarm type 2:
An error has occurred or user intervention is ur­gently required.
Alarm type 3:
A serious error has occurred. Follow the instructions provided by the error message. If the same error occurs repeatedly, call Leica Technical Service.
40
ALARM TYPE X
Allocates one of four different sounds to the alarm type. Each time the button is pressed, a different sound is allocated.
SOUND INTENSITY = Z
Selects the intensity of the sound. For alarm type 1 settings from 0 to 4 are possible. Intensity level = 0: alarm sound switched off. For alarm types 2 and 3 only intensity levels 3 and 4 can be set. The level currently selected is indicated on the button.
TEST
The alarm type set (sound, intensity) will sound for approx. 10 secs.
SOUND Y
Instructions for Use, V1.9, RevD - 12/2012
Page 41
5. Operation
The table below shows the specific events each individual alarm type is allocated to.
Time/Location Event Alarm ceases / switched offAlarm type
Instrument being switched on:
Drawers:
Staining:
Alarm 1
Alarm 3
Alarm 3
Alarm 3
Alarm 3
Alarm 1
Alarm 1
Alarm 1
Alarm 3
Alarm 3
All unload containers occupied when instrument is switched on.
Switching on after power failure while staining procedure was in progress.
Load/unload drawer open - time limit exceeded.
Load/unload drawer opened while gripper located in drawer area.
Unload drawer is full or rack was placed into the unload drawer.
Rack bearing a clip of a color not allocated to any program placed into load station.
Rack bearing a white clip placed into load station.
Rack bearing an unknown clip placed into load station.
Pause button has been pressed.
Unload drawer occupied, gripper attempting to unload completed rack.
- When all racks have been re­moved.
- When dialog box is acknowl­edged.
- After drawer has been closed.
- After drawer has been closed.
- After rack has been removed, dia­log box has been acknowledged.
- After rack has been removed or program allocated.
- After rack has been removed or program allocated.
- After rack has been removed or color allocated to unknown clip.
- When leaving pause mode.
- After dialog box has been ak­knowledged (‘successfully re­moved’).
Ovens:
Malfunctions requiring service:
Coverslipper:
Leica ST5020
Alarm 3
Alarm 2
Alarm 3
Alarm 3
A program the last step of which is not allocated to the unload drawer has been completed. - Rack must be removed.
One of the ovens does not reach set temperature. If the error occurs again, there will be a second alarm after 60 seconds.
Hardware failure, e.g. motion error of transfer arm. If the error occurs again after the instrument has been switched back on, the alarm will immediately sound again.
If the coverslipper requires an intervention by the user to function or continue functioning.
- After dialog box has been ak­knowledged (‘successfully re­moved’).
- After dialog box has been ak­knowledged
- After dialog box has been ak­knowledged and instrument swit­ched off.
- After dialog box has been ack­nowledged
41
Page 42
5. Operation

5.4.3 Password allocation

Any changes in this menu require supervisor access level. You may switch to supervisor mode only while no racks are being processed.
Switching password verification on/off
When switching between user and supervisor mode, switch the password verification on or off:
Press PASSWORD VERIFICATION.
The alphanumeric keyboard opens up - enter the password.
If the password is correct, the password verification button will be switched from ‘yes’ to ‘no’ and vice versa.
Changing the supervisor password
• To change the password, the currently valid password must be en­tered first.
Press ENTER, (keyboard opens up) and enter the current password.
• If an erroneous entry is made, an error message will be displayed which must be acknowledged.
42
Fig. 37
Attention!
A distinction is made between capital and small letters. If the entry made is correct, the new pass­word will have to entered twice. Each time, press ENTER.
After the new password has been entered twice, a confirmation message will be displayed.
Fig. 37 shows all three command prompts
displayed when changing the password.
Instructions for Use, V1.9, RevD - 12/2012
Page 43
5. Operation

5.4.4 Set date/time

Many of the instrument functions are time-controlled. - therefore it is very important to set date and time correctly.
Date
Fig. 38
The DATE / TIME window displays the current calendar month.
To set the DAY press the corre­sponding button.
Set MONTH and YEAR using the arrow buttons.
• After having set the date, press
CONFIRM to exit.
Time
Leica ST5020
To set the time, press TIME - the TIME window opens up.
• Use the arrow buttons to set HOURS and MINUTES.
As soon as you press CONFIRM to store your entries, the clocks starts running.
Fig. 39
43
Page 44
5. Operation

5.4.5 Movement

Any changes in this menu require administrator mode. For this reason, changes can only be performed if no staining programs are active. The parameters set in MOVEMENT are valid for all programs.
For
NUMBER OF DIPS
DIP AMPLITUDE
LIFTING SPEED only the settings indicated on
the buttons can be selected. The currently selected setting shows on the button next to the “=“ symbol. Press the button to go to the next higher setting.
NUMBER OF DIPS: Indicates how often the gripper dips the rack
into a reagent container before the rack is immersed in that container. ‘Yes’ must be selected in the DIPS column of the corre­sponding program.
No dips are performed if the setting “Number of Dips = ’0’“ is used, even if ‘Yes’ is entered in the DIP column in the program.
44
Fig. 40
DIP AMPLITUDE: Defines the stroke length of the arm when
dipping the rack (‘2’ = longer stroke than ‘1’).
LIFT SPEED: Indicates at what speed racks are removed
from reagent containers. The smaller the numbers selected, the slower the speed. At slower speeds, less reagent is carried over.
Instructions for Use, V1.9, RevD - 12/2012
Page 45
5. Operation

5.4.6 View and print

To view all stored protocols. The button bar of each protocol con­tains a PRINT button for individual printouts of each protocol.
• Printing is possible only when a printer is
connected.
Pressing the PRINT button starts printing the
selected list immediately. If printing is not possible, the button is disabled.
Press PRINT ALL to immediately print all six
protocols. Each protocol will start on a new
Fig. 41
page.
Press PRINT OPTIONS to determine which pro- tocols will be printed at what time.
• “Daily printout“ can be switched OFF and
ON for each protocol (press the correspond­ing ‘yes / no’ button).
Leica ST5020
Fig. 42
If OFF is selected for all printable protocols, no daily printout will be made. This does not affect the im­mediate printout function.
• Press PAPER FORMAT to select between
formats A4 and B4.
Press DAILY PRINTOUT TIME to access the
daily printout time submenu. Select the daily printout time as described above.
45
Page 46
5. Operation

5.4.7 Reagent list

The reagent list is an integral part of the user interface and can therefore be accessed from several different menus. Adjust it to the current reagents as soon as possible, as this makes programming considerably easier.
Fig. 43
There is a default list of standard reagents containing all reagents needed for the most common staining methods.
All reagents are listed in alphabetical order. A blue background indicates that a reagent has been selected.
Before you allocate any reagents to any pro­grams, make sure to update the reagent list according to the reagents actually used, i.e. add reagent names that are not part of the list and delete reagents that are not used.
The Reagent - Management - System (RMS) can be switched on / off in this menu.
Adding a reagent to the list
46
←→
Press NEW - the keyboard opens up.
Enter the name of the new reagent and confirm. Up to 20 characters per reagent can be entered.
The new reagent will be added to the table where it alphabeti­cally belongs and highlighted with the blue bar.
The alphabetical sorting function distinguishes between small and capital letters as per the ASCII code. Capital letters precede lower case letters.
Instructions for Use, V1.9, RevD - 12/2012
Page 47
5. Operation
Setting RMS data
↓↓
Deleting a reagent
If the Reagent Management System (RMS) is switched on, the table head­ers are displayed as buttons.
The following limit parameters can be defined for the RMS:
Maximum number of days the reagent may be used.
Maximum number of racks that can be processed until the next reagent change.
In ‘instrument status’ a red bar in the station button indicates how long a reagent has already been used de­pending on the values entered here.
The longer the red bar, the closer the time when the reagent will have to be changed. (See chapter 5.5.1)
Press the header buttons to access the corre­sponding numerical keypads for entering RMS data.
Fig. 44
Numbers between 1 and 99 can be entered in both columns.
Highlight the reagent you want to delete from the list.
Press DELETE and confirm the screen prompt. The reagent is removed from the list and the blue highlighting bar moves one row down.
Leica ST5020
Reagents can only be deleted if they are NOT allocated to any program or station. Otherwise there will be a message that de­leting is not possible.
47
Page 48
5. Operation
The RMS log
The Leica ST5020 is equipped with a Reagent Management System (RMS) graphically representing processing history of reagents in ‘Instrument Status’ ( These reagent data are stored in the RMS log table.
see chapter 5.5.1).
The RMS log table lists all re­agent stations, the reagents al­located to each station as well as their processing history.
Last change
Date when the reagent was last changed.
Racks
Number of racks that have been processed in a particular sta­tion since the reagent was last changed.
Information contained in a table row: Station
Shows the numbers of those stations defined as reagent stations.
Reagent
Reagent currently in a station or to be added to that station. The Leica ST5020 does not recog­nize reagents automatically - reagents are allo­cated by entry into the reagent list.
48
Fig. 45
Racks max.
Maximum number of racks that should be pro­cessed in a particular station without the re­agent being changed.
Days
Number of days since the reagent was last changed.
Days max.
Maximum number of days the reagent should remain in the station without being changed.
Instructions for Use, V1.9, RevD - 12/2012
Page 49
5. Operation

5.4.8 Station options

This screen provides an overview of all stations. Detailed information on individual sta­tions can be retrieved. Rack movements, however, are not shown.
8
Fig. 46
Screen indication and func­tionality of stations are iden­tical to the INSTRUMENT STATUS screen (see Fig. 49).
• Pressing a station button opens up the STATION DE- TAILS menu (
• Programs ready to be started are displayed above the station buttons (8). (Column ‘ready to start’ in Programs list = yes,
• Pressing one of these pro­gram buttons gives you di­rect access to the PRO- GRAMMING menu of the button pressed (
Fig. 51).
Fig. 54).
Fig. 56).
Leica ST5020
Additional functions:
Button DEL.STATION: At the prompt ‘Delete all reagent stations?’, press CONFIRM to define
all reagent-stations as empty and to delete all entries in the STATION
DETAILS menu. None of the programs will then be ‘ready to start’ any longer and none of the buttons (8) will be displayed.
If you wish to exit without making any changes, i.e. without deleting any stations, press CANCEL.
49
Page 50
5. Operation
PRINT button: Press for a printout of the
current station configu­ration.
Instead of the graphical screen dis­play, a list (
Fig. 47) will be printed,
which, in addition to the information provided by the graphical screen, also shows the reagents allocated to each station.
Fig. 47

5.4.9 Calibration dialog

In the CALIBRATION DIALOG menu you can en­hance or restore touch screen response to but­tons being pressed. We recommend to use a pen for the calibration procedure.
1
3
2
Fig. 48
The pen must be placed exactly on the red dot (1). The dot will move as shown in Fig. 29. To exit the menu, press the dot once more in Position 4.
Functional test:
Calibrate the screen and verify the result ap­proaching one of the screen buttons from all four sides - if the screen has been successfully calibrated, the button may not appear as pres­sed (wider border) before you actually touch it.
Standard appearance
Button pressed
50
Instructions for Use, V1.9, RevD - 12/2012
Page 51
5. Operation
5.4.10 D
ata backup
This menu allows all instrument data to be written to a PCMCIA card. It is even possible to load saved data from such a card into the multistainer memory. The data can only be backed up in supervisor mode (9, fig. 48). If a staining program is running, it is therefore impossible to write data to a PCMCIA card or load data from the card into the memory.
To ensure compatibility of card and instrument, the card must be formatted IN THE IN­STRUMENT before its initial use. Using a PCMCIA card that was formatted on a PC (e.g. with Windows XP) can lead to loss of data.
Formatting a PCMCIA card:
Change to the Supervisor mode.
Call up the keyboard (e.g. as required for en­tering the password, see
Chapter 5.4.3)
Enter the command “#format a:“.
The card is formatted. At the end of the pro­cess, the information line indicates whether the
Fig. 48
formatting was successful or not.
The following data is saved or loaded:
• All settings in the USER INTERFACE and MOVE menus as well as the print settings from the DISPLAY/PRINT menu.
The current station settings.
The reagent list.
The program list with all program details.
All saved clips (code and color allocation).
The error log (Errorlog.txt).
Leica ST5020
Fig. 49
Only the error log can be read directly from the card. All other data is stored in code form and cannot be edited with normal PC tools (e.g. text editing).
51
Page 52
5. Operation
Important! At least 1 MB of free memory is required on the PCMCIA card. Otherwise, data backup cannot be completed and the writing of the data to the card will appear to take a very long time. In this case (if data backup lasts longer than 2 min.), remove the card from the slot, replace it with an empty card and repeat data backup.
Backup the data as follows:
Insert a PCMCIA card into the card slot beside the mains switch (see
• Press the DATA BACKUP button in the SETTINGS menu. A window
• Press RESTORE to write the data from the card to the multistainer
While the data is being written, the buttons are masked and the text
• Press BACKUP to save the current instrument data on the PCMCIA
fig. 1, page 10).
with the buttons RESTORE and BACKUP then appears.
memory. The multistainer then always restarts automatically, acting just as it does when switched on (
Chapter 5.1, page 28).
“Backup inprogress...“ appears.
card. After securing the data, switch off the instrument before removing the card.
52
Caution! When you press a button in the data backup window, all data saved on the PCMCIA card or elsewhere in the instrument is automatically overwritten. The data is always saved or loaded into the instrument in its entirety. It is not possible to transfer individual files on their own (e.g. just the reagent list but not­hing else).
If you do not want to back up any data after calling up the menu, e.g. if you called up the menu by mistake or there is no (empty) PCMCIA card available, do NOT insert the card into the slot and press the BACKUP button to leave the data backup screen. No data will be written and the text "Backup inprogress..." does not ap­pear. However, if you press RESTORE, the instrument will restart as de­scribed above.
Instructions for Use, V1.9, RevD - 12/2012
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5. Operation

5.5 Instrument status

INSTRUMENT STATUS is the standard screen of the instrument, displayed automatically when the instrument is switched on (unless a different language is selected - s. chapter 4.1).
INSTRUMENT STATUS may also be accessed from the main menu, in which case a BACK button will be dis­played in the menu bar.
1
• The graphical display pro­vides information on station configuration, reagent status and current location of racks during a program run.
• Like in STATION DETAILS, programs ready to be started (with the exception of pro­grams defined as ‘white’) are displayed above the station buttons (1).
Leica ST5020
Fig. 50
If one of the colored program buttons (1) is pressed, the PROGRAM­MING menu of the corresponding program opens up.
(See chapter 5.6 for details).
The SCHEDULE button leads to the ‘Schedule’ menu, where all racks currently being processed are listed in a table. (See
chapter 5.7 for details).
• The PAUSE button is displayed only while staining programs are in progress. Press PAUSE to: interrupt rack processing - a window containing the button CONTINUE will open up and alarm type 3 will be triggered. Press CONTINUE to re­sume processing.
53
Page 54
5. Operation

5.5.1 Station buttons

Each of the 40 stations is configured as a button that can be pressed to directly access the STATION DETAILS menu. The station buttons are divided into three lines containing differ­ent types of information, depending on each individual configuration.
4
5

5.5.2 Station types

The first line contains the station number (2) plus a letter (3)
23
indicating the station type. These are: R: Reagent station L: Load station
O: Oven station E: Unload station W: Water station
Empty stations do not carry any letters.
At the left border of the button a bar (4) may be displayed, providing different types of information, depending on the type of station.
• The second and third line are activated when a station is used in a program run.
6
The first line of a station turns white (5) when the transfer
arm is located above that station.
7
In the second line the program code (6) is displayed in
the clip color that has been allocated.
The third line contains a rhombus (#) followed by the se-
quential number (7) of the rack. This rhombus counts the number of racks which pass the station everyday. When
Fig. 51
no. 99 is reached and everyday at 24:00, the rack counter is reset to “0“.
Load station
• There is a maximum of four load stations (L33-L36), L36 being non­changeable. Load stations do not have a bar on the left border.
54
After a new rack has been placed into a load station, the second line of the corresponding button indicates which program (color and code) has been recognized and will be carried out. The rhombus (#) indicates that the rack has been detected by the soft­ware and will be processed as soon as possible.
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5. Operation
Unload station
There is a maximum of four unload stations (E25 - E28) - E25 being non-
changeable. Unload stations do not have a bar on the left border.
Completed racks are placed into the unload stations by the transfer
arm, always starting with station E25. Line 2 shows which program has been completed, line 3 shows the rack number. The colored program indication blinks in two-second intervals.
RMS off RMS on
Reagent station
If the RMS (Reagent Management System) is ON, the bars at the left
border of each reagent station indicate reagent life. The higher the bar, the more time is still left until the reagent needs to be changed.
• If one of the set parameters (Days max., Racks max.) has been ex-
ceeded, the bar blinks in two-second intervals.
Assigning the reagent
Select a reagent station (via the corresponding button), and press the
REAGENT LIST button in the STATION DETAILS menu (
Fig. 51).
• Select the required reagent in the table (see Fig. 42) and press
CONFIRM. The selected reagent is now assigned to the station and entered in the RMS protocol.
Water station
If a bar is being displayed on the left, the station is ready for use.
The color of the bar changes as follows:
- blue bar: water entering into and exiting from the station
- white bar: water in the station is not running
The water flow is controlled automatically.
Leica ST5020
Oven station (optional)
If a bar is being displayed on the left, the station is ready for use.
The color of the bar changes as follows:
- red bar: oven heating up to set temperature.
- white bar: oven not heating.
The heater function is controlled automatically.
55
Page 56
5. Operation

5.5.3 Select station type

9
8
10
Fig. 52
Fig. 53
Station details
• Press one of the station buttons to access the STATION DETAILS menu.
If a station is empty, only the CHANGE STA- TION TYPE button (8) is displayed.
• If CHANGE STATION TYPE is pressed, the menu STATION TYPE CHOICE (
Fig. 53) opens
up where you can see which station types can be allocated to a particular station. But­tons corresponding to station types which cannot be selected are disabled.
• Pressing one of the enabled buttons changes the station type without any further confirmation being required and leads you back to STATION DETAILS.
Depending on the station type chosen, addi­tional station information is displayed. Information displayed for all station types (9):
- station number,
- station type,
- rack number. Rack number only if a rack is in the station.
If there is no rack in the station, the symbol (-) is displayed. Additional information can be found in the row below and on the right side of the screen (10).
• Additional buttons allow the user to select further settings, depending on the type of station.
56
Caution! The Leica ST5020 is not capable of verifying the actual content of a station. Therefore the user MUST make sure that the information entered into the STATION DETAILS menu is consistent with the reagent the station has actually been filled with.
Instructions for Use, V1.9, RevD - 12/2012
Page 57
Indications and buttons corresponding to the different station types Reagent station
Additional buttons
To open the reagent list (
chapter 5.4.7) for allocating reagents to stations.
Press UPDATE REAGENT after a reagent has been changed, in order to
set the date of “Last change“ to the current date;
set the date in the “Use by date“ row according to the RMS;
Set the rack counter to “00“.
Additional indication Reagent name: Shows the reagent allocated.
If the RMS is on, the following parameters are displayed:
Date last change: Date when the reagent was last changed. Use by date: Date when next change is required. Rack counter: Number of racks processed so far. Racks max.: Number of racks as per RMS that can still be
processed before the reagent needs to be changed .
Even when the RMS is switched off, an internal log is kept in the instrument. Therefore, all data displayed after switching the instrument on are always up-to-date.
Oven station
Additional button
Pressing TEMPERATURE opens up the numerical keypad for entering an oven temperature. Temperature settings between 40 and 70 °C (corre­sponding to 104-178 °F) may be selected.
Additional indication Heating off/on - indication controlled by staining program.
Temperature in degrees Centigrade/Fahrenheit.
5. Operation
Ovens 1 and 2 (stations 37/38) and ovens 3 and 4 (stations 39/40) are linked. All settings made for one of the ovens will automati­cally be applied to the second one, too.
Water station
Additional buttons: none Additional indication. Water flow yes/no - indication controlled by staining program.
Leica ST5020
57
Page 58
5. Operation

5.5.4 Change station type

Load/unload station
5
Reagent station
Load stations L33 - L35 and unload stations E26 - E28 can be defined as reagent stations, if needed.
Fig. 54
Both station types must be redefined station by station (one station at a time), starting from the ‘center’; i.e., if you wish to convert load and/or unload stations into reagent stations, you must start by converting sta­tions E28 or L33, respectively.
The CHANGE STATION TYPE button (5) only becomes available to the stations located further towards the outside after stations E28, or L33, respectively, have been converted into reagent stations. The same, in reverse order, applies for converting stations back into load / unload stations.
• Press CHANGE STATION TYPE (5) to access the STATION TYPE CHOICE menu. Proceed further as described in
chapter 5.5.3.
Tap water station
58
Reagent station
It is also possible to convert the water stations W7 - W12 into reagent stations, if needed. No particular order must be followed in that case.
Follow the same procedure as described above. In addition, however, the yellow tap water containers must exchanged for reagent contain­ers to prevent reagents from spilling.
If the RMS is on, all reagent stations will be registered, includ­ing those that have been converted into reagent stations later.
Instructions for Use, V1.9, RevD - 12/2012
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5. Operation

5.6 Staining programs

The PROGRAMS menu includes a table listing all staining programs stored. In supervisor mode (Fig. 54) the column headers CLIP COLOR, ABBR. and PROGRAM NAME are displayed as buttons. In addition, the buttons DETAILS, COPY, DELETE and NEW are dis­played, i.e. programs can be edited in this screen.
• Up to 50 different staining programs can be entered and stored.
• Existing programs may be copied and/or edited.
The DURATION column dis­plays the total duration of all program steps (in h:min:sec).
• The READY TO START col- umn (yes/no) indicates whether a program is ready to be started.
Individual button functions
Leica ST5020
Fig. 55
NEW creates a new (empty) program, located at the end of the pro­gram list.
Programs selected to be copied are always copied to the last row of the program list. All settings of copied programs are identical to those of the original ones and can be edited. The clip color allocated is al­ways WHITE.
Switches to the PROGRAMMING menu ( program steps are displayed. In supervisor mode new program steps may be edited.
Fig. 57) where the individual
59
Page 60
5. Operation

5.6.1 Creating programs

Creating new programs
Press NEW (see
Press PROGRAM NAME in the table header and enter a new program name via the KEYBOARD.
Press ABBR. to allocate a 3-digit code to the new program. This code will be displayed in the INSTRUMENT STATUS and STAINING SCHED- ULE menus.
Fig. 55) to create a new program row.
Press CLIP COLOR to access the PROGRAM CLIP COLOR ASSIGNMENT menu.
• Press a color button to allocate a color to the program selected. The 3-digit program code will be displayed on the color button.
Each color (except the color white) can only be allocated to one program at a time. Colors already allocated are identified by the corresponding three-digit program code and will be displayed as ‘pressed’ (wider border).
Fig. 56
60
Existing color allocations may be changed at any time. For that pur­pose, go to the program list (see the program to which you want to allocate a different color. In the ex-
ample, the color red is to be allocated to H&E (previously it was green). Then press CLIP COLOR to access the PROGRAM CLIP COLOR AS- SIGNMENT menu (
If the color you have selected was already allocated to a different pro­gram (color button contains 3-digit program code, PAP in the current example), you must confirm that the color will be taken away from that program.
Press CONFIRM in the screen prompt: the selected color is allocated to the selected (H&E) program. The program to which that color had been al­located up to that point (PAP) will be defined as white (in the CLIP COLOR column).
Fig. 56). Press the red color button here.
Fig. 55 for further details) and highlight
Instructions for Use, V1.9, RevD - 12/2012
Page 61

5.6.2 Defining the program steps

Press DETAILS (Fig. 54) to access the PROGRAMMING menu (Fig. 56). If a program is created from scratch, the list of the individual program steps is completely empty.
The number in the STEP column indicates the order in which the sta­tions will be used. Press INSERT ROW - a new program row (step) is created in the row
1
below and highlighted in blue/red.
2
Fig. 56
5. Operation
• The total number of steps (new programs automatically start from number “1“) is automatically in­creased by 1. The DURATION, EXACT and DIP columns already contain standard settings (2) which must be entered depending on the program step.
Code and name of the program (1) are located above the table con­taining the program steps.
Program steps are displayed in the order in which they are supposed to be carried out.
• Up to
40 steps can be defined for
each individual program.
Leica ST5020
For a complete definition of a program step, the following parameters have to be entered:
1. Station in which the step is supposed to be carried out.
2. Reagent corresponding to that step (must be allocated to the station).
3. Duration of the step.
4. Step duration must be defined as exact / non-exact.
5. Dips (yes/no).
6. Oven temperature (optional)
61
Page 62
5. Operation
Defining the program steps (continued)
Fig. 58
Selecting a station for a step
• Click on STATION in the header row, the CHOOSE STATION menu opens up (
Fig. 58).
• To allocate a station to the step, press the corresponding station button. The station (button) is displayed as pressed, and the lower row shows “P1“.
• Pressing CONFIRM assigns the selected
station to the step, and the display switches to the PROGRAMMING menu (Fig. 60).
Pressing RMS gives you access to the RMS protocol (Fig. 59) – a table providing information on the current configuration (which reagent in which station). See also chapter 5.4.7 RMS.
62
Fig. 59
Fig. 60
Important! Each station may only be selected once in a program. Otherwise, the REAGENT column is highlighted in red, and the program cannot be started.
• If a reagent has already been assigned to the selected station (recommended), it will be displayed in the REAGENT column. In this case, the row for the step is highlighted in blue.
Instructions for Use, V1.9, RevD - 12/2012
Page 63
5. Operation
Assigning reagents
Fig. 61
1
If no reagent is assigned to a program step,
press REAGENT in the header row to switch to the reagent list (see
chapter 5.4.7).
Highlight one of the reagents in the list and press CONFIRM to assign it to the program step.
The reagent is now assigned to the step but not yet to the station in which the step must be executed. For this reason, the row is highlighted in red (1) indicating that the program step is not yet ready to be started. Assign the reagent selected for the step to the correct station in INSTRUMENT STATUS
chapter 5.5.2).
(see This is required to ensure that the correct reagent is in the station since the instrument itself cannot detect it.
• Define the DURATION of the step, whether the step is EXACT or NON-EXACT and whether or not there are DIPS.
Leica ST5020
Fig. 62
Defining the duration of a step
Press DURATION and enter the desired duration of the step. Press CONFIRM: the selected duration is displayed in the DURATION col-
umn.
Caution! If no step duration is selected, the default duration “00:00:00“ will be used, i.e. the corresponding step will NOT be carried out.
63
Page 64
5. Operation
Defining exact steps
As there is potential for timing clashes to occur when multiple racks are present in the instrument, steps which require pre­cise timing are designated as ‘exact’ in the program.
Press EXACT to alter between yes (=exact) and no (not exact).
Immersion times at exact steps are achieved to within ± 1 second. Immersion time at non-exact steps is at least as long as defined, most of the time however, non-exact steps take longer than defined, as racks due for non-exact steps receive attention only as the transfer arm becomes available after an exact step.
Define ‘exact’ steps only when really needed. The more exact steps, the slower and less flexible the instrument (instrument throughput de­creases).
If you interrupt the staining with PAUSE, take care not to do so while an exact step is in progress. Otherwise, the program will be stopped and the duration of the step will be extended by the duration of the pause. This can the cause errors during stain­ing. If PAUSE buttun has been pressd druring an exact step is in process, a warnig message will be appear in the dialog box
Setting the dips
64
Press DIP to switch from yes (= Dips activated) to no and vice versa.
Duration and speed of one complete up and down movement (dip) are selected in the MOVEMENT menu. The parameters selected there will be applied to all programs. Increasing numbers of dips reduce instru­ment throughput.
For exact steps the following applies: If the immersion time of an exact step is shorter than the time to do the set number of dips, only the number of dips that fit into the immersion time will be done.
Instructions for Use, V1.9, RevD - 12/2012
Page 65
Completing the program
The last program step
5. Operation
Once the parameters EXACT and DIP have been selected, the defini-
tion of your step is complete.
Press INSERT ROW to create a new row for the next program step and
once again define all step parameters as described above.
Keep creating program steps until your program is complete.
• Program steps whose definition is not correct (duplicate station
assignment, incorrect reagent,...) are highlighted in red in the REAGENT column. Such steps must be corrected accordingly.
A program will not be ready to start until all details have been defined.
Three different types of “last steps“ can be defined:
1. Last step = unload station.
Go to CHOOSE STATION and select EXIT as last station.
2. Last step = transfer station to Cover Slipper (optional).
go to CHOOSE STATION and select CV as last station. The REAGENT column from the reagent list now allows selecting
between CV program 1 to CV program 4. The transferred rack is automatically processed with the selected pro­gram (1 ... 4) in the CV5030.
Leica ST5020
3. Last step = any station other than EXIT or CV.
Programs do not necessarily have to finish in the unload station, as a particular staining protocol might e.g. have to end with a specific re­agent not contained in the last station.
Be sure to define the DURATION of the last step. Otherwise it will not be carried out (default duration 00:00 will be assigned). Otherwise, the program cannot be started.
65
Page 66
5. Operation

5.6.3 Assigning a clip color

In this menu, you tell the instrument what color the clips attached to the individual racks are. You need to be in supervisor mode to assign colors to clips.
Automatic start
Fig. 63
Every time the load drawer is closed, the loading area is scanned for transponder signals coming from the clips attached to the racks in that area.
In supervisor mode, the instrument automati­cally switches from INSTRUMENT STATUS to CLIP COLOR if an unknown clip code is de­tected on a rack.
If in user mode, a message is displayed tell­ing the user that supervisor mode is required and asking whether to switch to that mode (see
chapter 5.8.2).
If an unknown clip is detected, proceed as fol­lows:
1. Select the station carrying the unknown clip - the station is displayed as having been pressed (wider border) - as e.g. station L34 in (Fig. 60).
2. Press the color button corresponding to the actual color of the clip on the rack. The color selected will be displayed on the station button (here: L34).
3. Press CONFIRM to go back to INSTRUMENT STATUS. The color will be allocated to the station (clip) as selected. If the selected color was al­ready allocated to a different program, the 3-digit program code of that program will be shown as well (see also Creating programs
5.6.1). Otherwise, three question marks “???“ will be displayed instead
of a program code.
chapter
66
If the clip color ‘white’ is selected, the instrument will switch to MANUAL PROGRAM START, where any program can be se­lected and started (see chapter 5.8.2).
Instructions for Use, V1.9, RevD - 12/2012
Page 67
5. Operation
Fig. 64
The clip is now identified via the transponder signal.
Its current allocation (color - program) is displayed.
Press CLIP COLOR.
Clip color and program code are displayed on the station button.
Select the station (L34 in our example).
Press the color button containing the new color you wish to allocate to
the clip.
The new color and, if that color was allocated to a different station be-
fore, the station code, is/are displayed on the station button.
Press CONFIRM to complete the color allocation procedure.
As the color ‘white’ has been selected, the instrument switches auto-
matically to MANUAL PROGRAM START, where you can allocate the desired program to the rack which is now equipped with a ‘white’ clip.
Once the program has been completed, you can repeat the above pro-
cedure to return the clip to its original (true) color.
Manual color allocation
Go to OPTIONS to assign a new color to a clip already linked to a different color.
Example:
A purple clip currently not need­ed needs to be defined as ‘whi­te’, as a white clip is needed but currently not available.
Proceed as follows:
Place a rack bearing the clip the color of which you want to redefine into any one of the load stations and close the drawer.
Leica ST5020
67
Page 68
5. Operation

5.7 Programs in process

PROGRAMS IN PROCESS is a table listing all programs currently in progress. It can be displayed instead of instrument status, as PROGRAMS IN PROCESS also provides infor­mation on all important run times.
Fig. 65
or
The table contains the following information:
Rack
Rack number - as in instrument status.
Staining protocol
3-Digit code and clip color allo­cated to a program.
Station
Indicates current rack position. GA means that a rack is current­ly being transferred.
(yes/no)
Exact
Provides information on whether a step has been defined as “ex­act“ or “non-exact“.
Press SORT to switch back and forth between two sorting options: by rack number and by total remaining processing time - the button will change accordingly.
List sorted by:
Increasing rack
number
Total remaining processing time
68
Remaining station time
Shows the remaining immersion time of the rack in the station.
Total remaining processing time
Total time remaining for the rack until the cur­rent program is completed.
All times are based on defined program step times and do not include any delays caused by non-exact steps. Times displayed are updated each sec. as well as each time a new racks starts being processed.
Instructions for Use, V1.9, RevD - 12/2012
Page 69
5. Operation

5.8 Staining

Prior to starting a staining program, thefollo­wing preparatory steps must be taken:
Optimize all USER INTERFACE parameters.
• Programs needed for staining must be ‘ready-to-start’.
• Stations have to be configured and filled according to configuration.
Racks needed for staining must be equipped with a clip and filled with the slides to be processed. Place the clips (1) onto the rack with the transponder (2) facing outwards.
Make sure the instrument “knows“ all clips needed for staining.
2
1
Caution with sequences which involve an oven at the initial step. In this case the loading unit, out of which the specimen holder is removed via the transport arm, must NOT be filled with an inflammable reagent (e.g. xylene). As the oven temperature is up to 80°C (176 °F), the reagent may ignite and cause damage to the device and to the samples.
For the same reason, steps conducted INSIDE an oven must never be carried out from a reagent station with inflammable reagents.

5.8.1 Loading the racks

• Racks may only be loaded via the load stations (front right of the instrument).
• Open the load drawer and insert the racks as shown in stations with the clips facing outwards (towards the user).
Each rack must bear a clip corresponding to the program to be run.
Close the drawer completely.
Fig. 66 in one of the load
Leica ST5020
For the clips to be recognized correctly, the load drawer must be opened for loading and subsequently be closed again. Do not insert the racks just opening the lid!
Fig. 66
69
Page 70
5. Operation

5.8.2 Starting programs

4
Once the drawer is closed, the load stations are scanned in order to identify the clips on the stations that have been loaded.
Once identified, the clip colors / program codes are displayed in IN- STRUMENT STATUS (3) (see also
chapter 5.5).
Automatic program start
Once all components have been identified and are ready to be started, the staining programs will start automatically. For programs to be started
(automatically), the instrument must be at
user access level (4).
If there are already some staining programs running, the new racks are integrated into the overall process as soon as the software detects capacity for a new program start. Racks are processed in the order of optimized throughput, not
3
Fig. 67
necessarily in the order in which they have been placed into the load station.
Loading a clip not allocated to a program (any longer)
If a rack placed into the load station carries a clip which is not allo­cated to any program or the color of which is allocated to a program not ready to be started, in the second line of the corresponding load station three question marks “???“ will be displayed instead of a pro­gram code.
Processing options with such a clip depend on the current instrument mode.
- In supervisor mode, the color of a ‘ready-to-start’ program can be
assigned to the clip (see
chapter 5.6.3).
70
- In user mode, an error message will be displayed, specifying why
that particular rack cannot be processed. At the same time, the corresponding alarm sound is triggered. Remove the rack to acknowledge the error message and stop the alarm; close the drawer.
Instructions for Use, V1.9, RevD - 12/2012
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Loading an unknown clip
Caution - bear in mind any steps defined as exact! During the color allocation procedure the instrument is paused. The programs in progress are paused until the color allocation has been completed and the instrument is switched back to user mode.
Manual program start
5. Operation
If a rack carrying an unknown clip is placed into the load drawer, the CLIP COLOR menu opens up automatically. If any staining processes are already in progress, a screen prompt will open up inquiring whether the user wishes to access supervisor mode.
- CONTINUE stops the selection procedure and continues the stain-
ing processes in progress. The load station button will display three question marks instead of a program code “???“ and no color allo­cation will be visible. - The rack must be removed.
- ADMINISTRATOR opens up the keyboard for entering the password
and then switches over to CLIP COLOR for a color to be allocated.
chapter 5.6.3)
(See
Manual start is recommended for programs less frequently used or if no suitable colored clip is available for a particular program. If a rack carry­ing a (defined) white clip is loaded, MANUAL PROGRAM START opens up.
Leica ST5020
A ‘ready-to-start’ program must be allocated to the rack.
• Press START to go back to INSTRUMENT STATUS. The rack will now be handled as if carrying a colored clip and the staining pro­cess will start as normal.
The manual program allocation of the white clip will be deleted when the program ends (and the rack is removed). The clip can then be reallocate to any program.
Fig. 68
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5. Operation

5.8.3 Interrupting a staining program

Caution! Before moving to the ‘parking’ position, the transfer arm com­pletes the movement cycle in progress. Wait UNTIL the transfer
While the instrument is in pause mode, alarm type 3 sounds and a dia­log box (see left) indicates PAUSE mode.
Press CONTINUE to resume staining.
arm is in the parking position before opening the instrument lid.
A staining process can be interrupted:
to gain access to the instrument in case any problems occurring during staining require user intervention.
to check or change reagents.
Press PAUSE in INSTRUMENT STATUS to interrupt all staining programs in progress at any given time.
The PAUSE button is displayed only when the instrument is in user mode and at least one staining program is being run.
Fig. 69
72
Caution - exact steps! If staining is interrupted, immersion times during PAUSE will not be identical to those in the chosen program(s). When PAUSE is pressed while an exact step is in progress, staining results might be negatively affected! The duration of the step will be extended by the duration of the pause. If PAUSE buttun has been pressd druring an exact step is in process, a warnig message will be appear in the dialog box.
Programs cannot be modified neither while staining is in progress nor in pause mode.
Instructions for Use, V1.9, RevD - 12/2012
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5.8.4 Finishing programs

Unloading racks from the unload drawer
If a rack is located in the unload drawer, the alarm type 1 sounds.
The code of the completed program and (in the bottom row) the basket number are displayed in the unload station symbol. The colored pro­gram indication blinks in two-second intervals.
Carefully open the unload drawer and remove the rack. You may also remove the entire reagent container together with the rack and re­place it by another container.
5. Operation
• Close the unload drawer - program code and rack number must disappear from the station button.
• If, despite the unload drawer having been opened and closed several times, the instrument still dis­plays code and rack number of the rack already re­moved, the transponder or the automatic recognition system might be defective. Press CANCEL RACK to manually ‘unload’ the clip.
Fig. 70
Removing racks from stations other than unload
If a program finishes in a station other than unload, alarm type 3 sounds at the end of the program and there will be a screen prompt requiring the user to remove the rack.
Press CONTINUE to confirm that the rack has been removed from the station. This is necessary, as the instrument will otherwise not be able to rec­ognize whether there is still a rack in that station or not.
Confirmation of rack removal also switches off the alarm. The staining program is considered to be finished and removed from the list of pending staining runs.
Leica ST5020
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5. Operation
Cancelling racks
Racks can be cancelled if needed.
Press STAINING SCHEDULE to access the stain- ing schedule menu.
• Select the rack you wish to cancel (highlight with blue bar).
Press CANCEL RACK.
Press YES to confirm. If NO is pressed, the instrument will switch back to the staining schedule menu without any changes being made.
Fig. 71
• When pressing YES a second prompt opens up, where you need to confirm that you have removed the rack from the station it was located in last. This step is necessary as the instrument itself is not able to detect whether there is a rack in that station or not.
74
Wait until the transfer arm has finished the movement in progress and is located in the parking position (rear left). Open the lid and remove the rack. WAIT until the station number is displayed on the screen - once this message is being dis­played, confirm that the rack has been removed.
Press CONFIRM - the current staining run is aborted and removed from the list of pending runs. Staining will be resumed starting with the next rack.
If the program highlighted by the blue bar has already been completed (rack already located in unload station or just being transferred to unload station), the CANCEL RACK button is dis­abled.
Instructions for Use, V1.9, RevD - 12/2012
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6.1 Cleaning the instrument

Interior
Remove the reagent and wash vessels. Clean the stainless-steel inner walls with a regular cleaner and rinse with water.

6. Cleaning and maintenance

Prior to cleaning the instrument, always switch off mains and unplug the power cord! When handling cleaning detergents, follow the instructions of the manufacturer and make sure all laboratory regulations in force in your country are complied with. Dispose of used reagents according to the laboratory regula­tions in force in your country! Immediately wipe away spilled solvents (reagents)! Solvent resistancy of the lid surfaces is limited if exposed to solvents for a lengthy period of time! Do not use any of the following for cleaning the outside sur­faces of the instrument: alcohol, detergents containing alcohol (window cleaner!), abrasive cleaning powders, solvents con­taining acetone or xylene! No liquid may come into contact with the electrical connec­tions or spill into the interior of the instrument and/or the trans­port arm!
Transfer arm
Outside surfaces
TFT touch screen
Leica ST5020
The transfer arm contains sensitive electronic components. Therefore do not clean with any liquid but simply wipe down with a slightly moistened cloth.
Clean the painted outside surfaces with a mild detergent and subse­quently wipe down with a moistened cloth. Do not use any solvents for cleaning the outside surfaces and/or the lid!
Use a commercial screen cleaner for cleaning the touch screen. Use as directed by the manufacturer.
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6. Cleaning and maintenance
Wash and reagent vessels
Clean the wash and reagent vessels in the laboratory dishwasher at maxi­mum +65 °C. Use a standard laboratory dishwasher detergent.
Drain outlet / hose
From time to time check the waste water drain hose for accumulated dirt, particularly for algae. Clean whenever necessary. To prevent the growth of bacteria, the drain system may be flushed with 5% sodium hypochlorite. Metal parts may, however, not be exposed to this solution for a lengthy period of time (e.g. overnight). Therefore, rinse with abundant water after cleaning with sodium hypochlorite.
Slide racks
Clean with household or laboratory cleaners, as needed.
The vessels may not be exposed to temperatures any higher than 65 °C (e.g. do not clean in industrial dishwashers, which run at a temperature of 85 °C), as the stations might become de­formed!
Oven
Regularly check the paraffin collecting tray(s) at the bottom of the oven(s) for paraffin residues and clean, if necessary.

6.2 General maintenance

The instrument is virtually maintenance-free in operation. To ensure smooth operation of the instrument over many years we do, however, recommend the following:
Have the instrument inspected once per year by a qualified service en-
At the end of the warranty period, enter into a service contract. For
76
gineer authorized by Leica.
more information, please contact your local Leica technical service center.
Instructions for Use, V1.9, RevD - 12/2012
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6.3 Preventative maintenance schedule

6. Cleaning and maintenance
Maintenance activity
Clean the TFT screen with a lint-free cloth. Follow the manufacturer's instructions when using screen cleaner.
Clean outside surfaces of instrument and lid with soft cloth. Use cleaning detergent, if necessary.
Clean wash vessels. Check the wash vessel O-rings for damage and lubrica­te them slightly. See Fig. 4, page 16 for further details.
Remove and clean the reagent vessels. A dishwasher up to 65 °C can be used.
Check waste water hose for accumulated dirt and cle­an, if necessary.
Remove paraffin residues from paraffin collecting tray(s) of the oven(s).
Check strainer (V-Filter, Pos. 3 in Fig. 6, S. 18) in tap wa­ter inlet hose for accumulated dir tand clean, if neces­sary.
daily
weekly
monthly
Check air vent holes of fans for dust. Clean, if necessa­ry.
Check the tap water inlet hose connection for damage. If necessary, replace the gasket as described in Chap-
ter 4.3, page 18.
Replace activated carbon filter as described in Chapter
4.6, page 24.
Check electrical connections at rear panel of instrument.
Leica ST5020
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7. Troubleshooting

7.1 General

7.2 Correcting errors

The Leica ST5020 is equipped with a troubleshooting system. If an error is detected, detailed error messages and corresponding user
instructions on what to do are displayed on the touch screen. For all correctable error conditions the instrument will take corrective ac-
tions to protect the specimens. Details of all staining protocols carried out are recorded in the daily run
log. The daily run log can be viewed and/or printed in the VIEW/PRINT menu.
If any programs are in progress, check the job queue containing the stain­ing programs to be run.
If all programs are completed, check the error log for error messages: access the error log (either view in menu VIEW/PRINT --> ERROR LOG) or
print it out - entries are listed in chronological order.

7.3 Power failure

78
Check whether there is a general power failure (no mains power).
Check whether the mains plug is inserted correctly into the wall outlet and whether the wall outlet is switched on, if applicable.
Check whether jumper cable (or UPS cable) is inserted correctly into the corresponding sockets.
Check whether the mains switch is switched on correctly.
Check whether one of the four secondary fuses is defective. Some instrument malfunctions / failures are caused by defective fuses.
Instructions for Use, V1.9, RevD - 12/2012
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Power failure
7. Troubleshooting
Malfunction / failure
Instrument not working - no response.
No data can be entered via touch screen
or touch screen darkened.
Stepper motors do not work.
Instrument does not work properly.
Instrument cannot be operated at all
or instrument responses are faulty.
Erroneous display indication.
Wash stations emptying (solenoid valves
not being addressed).
Extraction fan not working.
Transfer arm not moving.
Oven malfunction (oven fan).
No vertical transfer arm movement.
Transfer arm brake system not working.
Fuse to be checked
Fuse F1
Fuse F2
Fuse F3
Fuse F4
Leica ST5020
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7. Troubleshooting

7.4 Replacing the secondary fuses

Prior to exchanging a fuse, always switch the instrument off and unplug the mains cord. Defective fuses may be replaced only with the replacement fuses supplied together with the instrument.
Important! Follow the instructions below to make sure you select the correct replacement fuse for each fuse holder.
Selecting the correct replacement fuse
The amp value (here: 2A) printed on the fuse and the amp value next to the fuse holder on the rear panel of the instrument MUST be identical!
Four fuse holders, marked F1 through F4, are located at the rear panel of the instrument, below the power supply sockets.
Check the malfunction table on
page 78 to find out, which
fuse needs to be replaced.
Example:
Touch screen failure:
--> Exchange fuse F1.
The fuse value is shown on the metal caps of the replacement fuses - the imprint looking more or less as indicated above (may vary slightly depending on the fuse type).
Amperage (A) is the parameter that is important for allocating fuses correctly to the correspond­ing fuse holder (in the example above: F1/T2A )
80
Fig. 72
To replace the fuse in fuse holder F1, select the replacement fuse marked ‘2A‘ (see
Fig. 69).
Only the fuse marked ’2A‘ can be inserted into fuse holder F1. The same applies for the remain­ing fuse holders F2 - F4, i.e. always make sure the amp rating on the fuse corresponds to the amp rating indicated above the fuse holder.
Instructions for Use, V1.9, RevD - 12/2012
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7. Troubleshooting
Replacing the fuses
1
3
2
Fig. 73 Fig. 74
Insert a screwdriver (1) into the slot on fuse holder (2) and push slightly inwards rotating the screwdriver 1/4 turn to the left at the same time.
The fuse holder is released and can be re­moved.
2
Remove the defective fuse (3) from the fuse holder (2) and insert the correct type re­placement fuse.
• Reinsert the fuse holder together with the fuse into the instrument housing. To lock the fuse holder in place, insert the screwdriver into the slot, push slightly inwards and rotate 1/4 turn to the right at the same time.
Leica ST5020
81
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8. Warranty and service

Warranty
Leica Biosystems Nussloch GmbH guarantees that the contractual prod­uct delivered has been subjected to a comprehensive quality control pro­cedure based on the Leica in-house testing standards, and that the prod­uct is faultless and complies with all technical specifications and/or agreed characteristics warranted.
The scope of the warranty is based on the content of the concluded agreement. The warranty terms of your Leica sales organization or the or­ganization from which you have purchased the contractual product shall apply exclusively.
Technical service information
If you require technical service or replacement parts, please contact your Leica sales representative or dealer who sold the product.
Please provide the following information:
Model name and serial number of the instrument.
Location of the instrument and name of the person to contact.
Reason for the service call.
Date of delivery.
Decommissioning and disposal
The instrument or parts of the instrument must be disposed of in compli­ance with the local laws.
To prevent damages to the instrument and specimens, only those accessories and spare parts which have been authorized by Leica may be installed or used with the instrument.
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Instructions for Use, V1.9, RevD - 12/2012
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9. Appendix

Station 40
Station 39
Station 38
Station 37
Oven
Oven
Oven
Oven
Station 12
Station 11
Station 10
Station 9
Station 8
Reagent
Station 7
Reagent
Station 6
Water
Water
Water
Water
Water
Reagent
Station 24
Reagent
Station 23
Reagent
Station 22
Reagent
Station 21
Reagent
Station 20
Reagent
Station 19
Reagent
Station 18
Station 36
Station 35
Station 34
Station 33
Reagent
Station 32
Reagent
Station 31
Reagent
Station 30
Load
Load
Load
Load

9.1 Container Map

Staining:
Leica ST5020
Reagent
Station 5
Reagent
Station 4
Reagent
Station 3
Reagent
Station 2
Reagent
Station 1
Reagent
Station 17
Reagent
Station 16
Reagent
Station 15
Reagent
Station 14
Reagent
Station 13
Reagent
Station 29
Station 28
Station 27
Station 26
Station 25
Exit
Exit
Exit
Exit
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9. Appendix
Station 40
Station 39
Station 38
Station 37
Oven
Oven
Oven
Oven
Station 12
Station 11
Station 10
Station 9
Station 8
Reagent
Station 7
Reagent
Station 6
Water
Water
Water
Water
Water
Reagent
Station 24
Reagent
Station 23
Reagent
Station 22
Reagent
Station 21
Reagent
Station 20
Reagent
Station 19
Reagent
Station 18
Station 36
Station 35
Station 34
Station 33
Reagent
Station 32
Reagent
Station 31
Reagent
Station 30
Load
Load
Load
Load
Container Map
Staining:
84
Reagent
Station 5
Reagent
Station 4
Reagent
Station 3
Reagent
Station 2
Reagent
Station 1
Reagent
Station 17
Reagent
Station 16
Reagent
Station 15
Reagent
Station 14
Reagent
Station 13
Reagent
Station 29
Exit
Station 28
Exit
Station 27
Exit
Station 26
Exit
Station 25
Instructions for Use, V1.9, RevD - 12/2012
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9. Appendix

9.2 Optional accessories

To prevent damages to the instrument and specimens, only those accessories and spare parts which have been authorized by Leica may be installed or used with the instrument.
Order No.
Reagent vessels, assy. (with handles and lids) 14 0475 33659 Wash vessels, assy. with connection piece 14 0475 33660 Lid, slotted - for reagent vessel 14 0475 34486 Lid, w/o slots - for reagent vessel 14 0475 34488 Slide rack 30 - pack of 1 - plastic 14 0475 33750 Slide rack 30 - pack of 5 - plastic 14 0475 33643 Slide rack 30, metal 14 0456 33919 Rack - special stainings 14 0475 34524 Insert - special staining 14 0475 34525 Lid for 12 vessels, assy. 14 0475 33644 Adapter - Sakura 14 0475 34515 Adapter Medite 20 14 0475 34516 Adapter Medite 30 14 0475 34517 Adapter Shandon 14 0475 34518 Adapter Microm 30 14 0475 34943 Clips, assy. - white Pack of 5 14 0475 33632 Clips, assy. - yellow Pack of 5 14 0475 33633 Clips, assy. - light blue Pack of 5 14 0475 33634 Clips, assy. - dark blue Pack of 5 14 0475 33635 Clips, assy. - pink Pack of 5 14 0475 33636 Clips, assy. - red Pack of 5 14 0475 33637 Clips, assy. - light green Pack of 5 14 0475 33638 Clips, assy. - purple Pack of 5 14 0475 33640 Clips, assy. - grey Pack of 5 14 0475 33641 Tap water inlet hose, 2,50 m length, assy. with 3/4” connection for water tap 14 0475 32325 ‘V’ strainer 3/4”-40/22 A6 (strainer for inlet hose) 14 0456 36101
Set of gaskets for tap water inlet hose 14 0300 00132
Leica ST5020
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9. Appendix
Optional accessories
Order No.
Power cord "D" 14 0411 13558 Power cord "UK" ST-BU F-5A 14 0411 27822 Power cord "USA-C-J" 14 0411 13559 Jumper cable - mains 14 0411 34604 Vessel holder, assy. Hose clamp for waste water hose 14 0422 31972 Waste water hose 2 m 14 0475 35747 Waste water hose 4 m 14 0475 35748 Exhaust air hose 2m assy. 14 0475 35762 Exhaust air hose 4m assy. 14 0475 35763 Remote alarm jack - 6.3 mm 14 6844 01005 Oven - Leica ST5020, assy. 14 0475 34611 Leica TS5025 - Transfer station, assy. ST5020 --> CV5030 14 0478 36703 Demo - Box Leica ST5020 14 0475 36230 Activated carbon filter 14 0474 32273 Base plate ST5020/CV5030 14 0475 37647 Leica ST Ultra - Clearing Agent 14 0709 36260 Special O-ring grease - 25 ml Haas OHA 14 0336 36657 PCMCIA Flash Card, with adapter 14 0475 42526
Compact flash card adapt. 14 0475 37684 Compact flash card 16MB 14 0475 37683 Heatable reagent st. kit 14 0475 34612 Wash vessel module - 1 wash vessel 1 tap water inlet hose 2.5 m 14 04753 7071 replacement fuses:
fuse T 2,0 A 14 6943 02001 fuse T 2.5 A 14 6943 02501 fuse T 4.0 A 14 6943 04001
04 14 0475 34548
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10. Information for the People´s Republik of China

Leica ST5020
87
Page 88
Notes
88
Instructions for Use, V1.9, RevD - 12/2012
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