All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, by any means, electronic,
mechanical, photocopying, recording, or otherwise, without written permission from Ocean Optics, Inc.
This manual is sold as part of an order and subject to the condition that it shall not, by way of trade or otherwise, be lent, resold, hired out or
otherwise circulated without the prior consent of Ocean Optics, Inc. in any form of binding or cover other than that in which it is published.
Trademarks
All products and services herein are the trademarks, service marks, registered trademarks or registered service marks of their respective owners.
Limit of Liability
Ocean Optics has made every effort to ensure that this manual as complete and as accurate as possible, but no warranty or fitness is implied. The
information provided is on an “as is” basis. Ocean Optics, Inc. shall have neither liability nor responsibility to any person or entity with respect to
any loss or damages arising from the information contained in this manual.
Table of Contents
About This Manual......................................................................................................... vii
Document Purpose and Intended Audience..............................................................................vii
What’s New in this Document ................................................................................................... vii
Index ...................................................................................................183
vi 000-20000-300-02- 201110
About This Manual
Document Purpose and Intended Audience
This document provides you with an installation and configuration instructions to get your system up and
running. In addition, user interface for SpectraSuite® is provided.
What’s New in this Document
This version of the SpectraSuite Spectrometer Operating Software Installation and Operation Manual
updates the manual to the core release 2.0.162.
Document Summary
ChapterDescription
Chapter 1: Introduction
Chapter 2: Installation
Chapter 3: Controls and Indicators
Chapter 4: File Menu Functions
Chapter 5: View Menu Functions
Chapter 6: Spectrometer Menu Functions
Chapter 7: Processing Menu Functions
Chapter 8: Tools Menu Functions
Chapter 9: Window Menu Functions
Chapter 10: Strip Charts
Provides an overview of the SpectraSuite operating software.
Contains instructions for installing and configuring the
SpectraSuite software.
Illustrates options for customizing your graph view. Also
contains information for peak finding.
Contains descriptions of the functions on the File menu.
Contains a description of the functions on the View menu.
Contains descriptions of the functions on the Spectrometer
menu.
Contains descriptions of the functions on the Processing
menu.
Discusses the selections available in the Tools menu.
Contains information for the Window menu functions.
Provides instructions for using the Strip Charts feature.
000-20000-300-02- 201110 vii
About This Manual
ChapterDescription
Appendix A: Experiment Tutorials
Appendix B: Troubleshooting
Contains instructions for performing sample experiments
using an Ocean Optics spectrometer and SpectraSuite
software.
Provides a table of possible problems and suggested
solutions.
Product-Related Documentation
ADC1000-USB Operating Instructions
Amadeus and Quantum Software User’s Guide
ARCoptix ANIR Fourier Transform Spectrometer
External Triggering Options Instructions
External Triggering Options for Spectrometers with Firmware 3.0 and Above
HR2000 and HR2000CG-UV-NIR Series High-Resolution Fiber Optic Spectrometers Installation
and Operation Manual
HR2000+ High-speed Fiber Optic Spectrometer Installation and Operation Manual
HR4000 and HR4000CG-UV-NIR Series High-resolution Fiber Optic Spectrometers Installation
and Operation Manual
Jaz Installation and Operation Manual
MMS Raman Spectrometer Installation and Operation Manual
NIR Near Infrared Fiber Optic Spectrometers Installation and Operation Manual
NIRQuest Near Infrared Spectrometer Installation and Operation Manual
QE65000 Scientific-grade Fiber Optic Spectrometer Installation and Operation Manual
Red Tide USB650 Fiber Optic Spectrometer Installation and Operation Manual
Remora Installation and Operation Manual
S2000 Miniature Fiber Optic Spectrometers and Accessories Operating Manual and User’s
Guide
USB2000 Fiber Optic Spectrometer Installation and Operation Manual
USB2000+ Fiber Optic Spectrometer Installation and Operation Manual
USB4000 Spectrometer Installation and Operation Manual
You can access documentation for Ocean Optics products by visiting our website at
http://www.oceanoptics.com
document from the available drop-down lists. Or, use the
. Select Technical → Operating Instructions, then choose the appropriate
Search by Model Number field at the bottom
of the web page.
viii 000-20000-300-02- 201110
1: Introduction
You can also access operating instructions for Ocean Optics products on the Software and Technical
Resources
CD included with the system.
Engineering-level documentation is located on our website at
SeaChanger documentation is located at http://seachangeronline.com/.
Technical → Engineering Docs.
Upgrades
Occasionally, you may find that you need Ocean Optics to make a change or an upgrade to your system.
To facilitate these changes, you must first contact Customer Support and obtain a Return Merchandise
Authorization (RMA) number. Please contact Ocean Optics for specific instructions when returning a
product.
640-11100-000-02- 201110 ix
About This Manual
x 000-20000-300-02- 201110
Chapter 1
Introduction
Product Overview
SpectraSuite® is a modular, Java-based spectroscopy software platform that operates on 32- and 64-bit
Windows, Macintosh and Linux operating systems. The software can control any Ocean Optics USB
spectrometer and device. The SpectraSuite interface looks and feels the same on all operating systems yet
retains the familiar appearance of an application native to each OS. Ocean Optics is the first to offer such
a flexible, feature-packed application with this level of cross-platform capability.
SpectraSuite is the platform for all future Ocean Optics application software development. Current
software applications including OOIChem, OOIColor and OOIIrrad-C have been migrated to the
SpectraSuite platform.
USB Spectrometer and Device Control
SpectraSuite easily manages multiple USB spectrometers – each with different acquisition parameters –
in multiple windows, and provides graphical and numeric representation of spectra from each
spectrometer. Using SpectraSuite, you can combine data from multiple sources for applications that
include upwelling/downwelling measurements, dual-beam referencing and process monitoring.
SpectraSuite can be used with the following Ocean Optics spectrometers when they are interfacing to a
computer through their USB port:
In addition, SpectraSuite is compatible with the Remora Wi-Fi™ /Ethernet Adapter.
Features
Platform Independent – The SpectraSuite is a platform-independent application that
provides graphical and numeric representation of spectra in one window. SpectraSuite
can operate on a Windows, Linux, or Macintosh operating system.
Variety of Storage Formats – Spectrasuite stores and provides data in a variety of other
formats including tab-delimited ASCII (for Excel or other analysis packages), Grams
SPC, and JCAMP.
Advanced Data Capture Control – SpectraSuite provides the user with advanced
control of episodic data capture attributes. For instance, a user can acquire data for a
fixed number of scans or for a specific interval. Initiation of each scan can be externally
triggered or event-driven. Captured data is quickly stored into a systems memory at
speeds as fast as 1 scan per msec with speeds limited by hardware performance.
Independent Control of Multiple USB Devices – Multiple USB devices can be
monitored on the same graph in a single window; each of these devices can be controlled
independently.
SpectraSuite in the Future
SpectraSuite is constantly evolving. With the purchase of SpectraSuite, you are entitled to one year of
free, web-based, automatic upgrades (see
Getting Updates).
Spectroscopic Functions
SpectraSuite allows you to perform the three basic spectroscopic experiments – absorbance, reflectance
and emission, as well as absolute irradiance, color and chemical concentration. Signal-processing
functions such as electrical dark-signal correction, stray light correction, boxcar pixel smoothing and
signal averaging are also included. Scope mode, the spectrometer operating mode in which raw data
(signal) is acquired by the detector, allows you to establish these signal-conditioning parameters. The
basic concept for the software is that real-time display of data allows users to evaluate the effectiveness of
their experimental setups and data processing selections, make changes to these parameters, instantly see
2 000-20000-300-02- 201110
1: Introduction
the effects and save the data. Most spectrometer-system operating software does not allow such signalconditioning flexibility.
With SpectraSuite, you can perform time-acquisition experiments for kinetics applications. As part of the
time-acquisition function (strip charts), you can monitor and report single wavelengths, and you can
average between wavelengths and find the integral between two wavelengths. In addition, you can
perform reference monitoring in a variety of ways: single wavelength (1 or 2 channels), integrated
intensity (starting and ending wavelengths for 1 or 2 channels) and wavelength-by-wavelength (2
channels).
SpectraSuite gives you complete control of setting the parameters for all system functions such as
acquiring data, designing the graph display, and using spectra overlays. SpectraSuite has the benefit of
providing various software-controlled triggering options for external events such as laser firing or light
source pulsing.
Other advanced features give you several data-collection options. You can independently store and
retrieve dark, reference, sample and processed spectra. All data can be saved to disk using
autoincremented filenames. You can save data as ASCII files or in the native GRAMS/32 SPC or JCAMP
format. One feature prints the spectra and another copies spectral data into other software such as Excel
and Word.
Getting Updates
SpectraSuite software features one year of free, web-based automatic upgrades when you buy the
software. This service requires that you register the first time you connect. You can purchase renewals for
half the software price per year.
The update icon (
available for your software (see
or select
in the Update Center wizard to update your SpectraSuite software. If you encounter a problem when
updating, you can obtain the latest full installer from the Software Downloads page on the Ocean Optics
website at
Tools | Update Center from the SpectraSuite menu to go to the Update Center. Follow the steps
http://www.oceanoptics.com/technical/softwaredownloads.asp, and then reinstall.
) appears on the lower right corner of the SpectraSuite screen when updates are
Update Available for more information on this icon). Click on this icon,
000-20000-300-02- 201110 3
1: Introduction
4 000-20000-300-02- 201110
Chapter 2
Installation
Overview
The following sections will guide you in installing SpectraSuite on a Windows, Macintosh or Linux
operating system.
Note
Do NOT connect the spectrometer to the computer until you install the SpectraSuite
software. Follow the instructions contained in this chapter to properly connect and
configure your system.
Installing SpectraSuite
SpectraSuite can be downloaded from the Ocean Optics Software Downloads site, or retrieved from the
CD that you received with your purchase of the software.
This section contains instructions for installing SpectraSuite using both methods on each of the following
operating systems:
Microsoft Windows – Windows 2000, XP; 32-bit and 64-bit
Apple Macintosh – OS X version 10.0 or later
Linux – Red Hat 9 or later, Fedora (any version), Debian 3.1 or later (Sarge), SUSE (9.0 or later),
Centos (any version), and Ubuntu
Retrieving from a CD
Your SpectraSuite software is shipped to you from Ocean Optics on a CD. The software is located either
on the main
separate CD labeled
jacket of the CD containing your SpectraSuite software to complete the installation.
Software and Technical Resources CD, or (in the case of the Windows 64-bit version) on a
SpectraSuite Windows 64-bit Version. You will need the password located on the
000-30000-020-02- 201110 5
2: Installation
► Procedure
1.Insert the CD that you received containing your SpectraSuite software into your computer.
2.Select the SpectraSuite software for your computer’s operating platform via the CD interface.
Then follow the prompts in the installation wizard.
Or,
Browse to the appropriate SpectraSuite set-up file for your computer and double-click it to start
the software installation. Set-up files are as follows:
Windows 32-bit: SpectraSuiteSetup_Windows.exe
Windows 64-bit: SpectraSuiteSetup_Windows64.exe
Mac: SpectraSuiteSetup_Mac.dmg
Linux 32-bit: SpectraSuiteSetup_Linux32.bin
Linux 64-bit: SpectraSuiteSetup_Linux64.bin
Downloading from the Ocean Optics Website
Installing on a Windows Platform
Total download is approximately 50 MB (32-bit) or 70 MB (64-bit).
► Procedure
1.Close all other applications running on the computer.
2.Start Internet Explorer.
3.Browse to the Software Downloads page on the Ocean Optics website at
4.Click on the SpectraSuite software appropriate for your Windows operating system.
5.Save the software to the desired location. The default installation directory is
Files\Ocean Optics\SpectraSuite
process. The SpectraSuite icon location is
SpectraSuite
and the current user’s desktop.
. The installer wizard guides you through the installation
Start | Programs | Ocean Optics | SpectraSuite |
\Program
6 000-20000-300-02- 201110
2: Installation
Note
If you have previously installed the 64-bit Beta release, you must first uninstall
SpectraSuite, plug your spectrometer in and then uninstall the spectrometer driver from
the Windows Device Manager before proceeding.
When you plug your spectrometer in again, the Found New Hardware wizard will launch.
Tell the wizard to allow you to specify the location of the drives and browse to the
SystemFiles directory of the SpectraSuite installation (by default this will be C:\Program
Files\Ocean Optics\SpectraSuite\SystemFiles). Continue through the wizard normally. If
the wizard prompts for the location of a DLL, look in C:\Program Files\Ocean
Optics\SpectraSuite\SystemFiles\amd64.
Installing on a Macintosh Platform
You must be logged on as an administrative user to install SpectraSuite on your Mac. Total download is
less than 25 MB.
► Procedure
1.Download the Mac OS X installer from the Software Downloads page on the Ocean Optics
website at http://www.oceanoptics.com/technical/softwaredownloads.asp
usually be located either on your Desktop or in your Downloads folder.
2.Double-click the SpectraSuiteSetup_Mac.dmg file to mount the disk image. A new SpectraSuite
icon resembling a disk drive appears on your desktop. The new icon should open automatically
(if it doesn’t, double-click it).
3.Copy the SpectraSuite icon to your desktop.
4.When the installation is complete, drag the SpectraSuite drive icon to the trash can.
. The saved file will
Installing on a Linux Platform
Total download is approximately 45 MB.
► Procedure
1.Download the Linux installer from the Software Downloads page on the Ocean Optics website at
You are prompted for your password, which allows you to execute the setup as root. Contact your
system administrator if you do not have password.
If the sudo command does not work (it may not be set up for your user account), then enter the
following:
su
(enter password for root)
~/Desktop/SpectraSuiteSetup_Linux.bin
The Linux version of SpectraSuite requires some libraries that may not be installed by
default, depending on the Linux distribution. The following are libraries are required, and are
not provided as part of SpectraSuite:
libstdc++ version 6.
libXp version 6 (earlier versions may work too). In Fedora Core 3 and 4, this is provided
in xorg-x11-deprecated-libs.
libusb version 0.1.10 or newer (should be provided in a libusb package or can be
downloaded from http://libusb.sourceforge.net/download.html#stable
).
It may be necessary to modify SELinux (Security Enhanced Linux) restrictions before
SpectraSuite will run. It is possible to remove SELinux auditing by running 'setenforce
Permissive' as root or by customizing your SELinux policies. The SpectraSuite installer does
not modify system security settings.
Note
The default installation directory is /usr/local/OceanOptics/SpectraSuite.
A symbolic link is put in /usr/bin so that you can enter
to start the program.
The SpectraSuite icon (
Applications or Other under the Application Launcher menu.
) location varies by installation, but will be under either
spectrasuite on any command line
Installing Device Drivers for Windows 64-Bit
Installations
Hardware device driver installation is seamless on Microsoft Windows 32-bit operating systems when
you connect your spectrometer to your computer. However, 64-bit Windows 7 and Vista systems require
a bit more care when connecting your spectrometer for the first time. See the following sections for more
information.
8 000-20000-300-02- 201110
2: Installation
Windows 7 64-bit Driver Installation Process
Use the following procedure when connecting your spectrometer to a Windows 7 64-bit system. This
procedure uses the connection of an HR4000 Spectrometer as an example.
► Procedure
1.Connect your spectrometer to your computer. The following screen appears.
2.Click Close.
3.Install the driver. To do this, open the Control Panel. The following screen appears:
000-20000-300-02- 201110 9
2: Installation
4.Click Device Manager.
5.Under Other devices, right-click on the Ocean Optics spectrometer and choose update driver
software
. The following screen appears.
10 000-20000-300-02- 201110
6.Choose Browse my computer for driver software.
2: Installation
7.Navigate to C:\Program Files\Ocean Optics\SpectraSuite\SystemFiles and click OK. Then click
Next. The following screen appears:
000-20000-300-02- 201110 11
2: Installation
8.When the following pop-up screen appears, choose Install this driver software anyway.
9. When the driver installation is successful, you will see the following screen:
12 000-20000-300-02- 201110
2: Installation
Windows Vista 64-bit Driver Installation Process
Use the following procedure when connecting your spectrometer to a Windows Vista 64-bit system. This
procedure uses the connection of an HR4000 Spectrometer as an example.
► Procedure
1.Connect your spectrometer to your computer. The following screen appears.
2.Choose Locate and install driver software. The following screen appears:
000-20000-300-02- 201110 13
2: Installation
3.Choose Don't search online. When the dialog box appears asking for your permission to
continue, click
Yes.
4.Choose I don't have the disk.
14 000-20000-300-02- 201110
2: Installation
5.Choose Browse my computer for driver software (advanced).
6.Navigate to C:\Program Files\Ocean Optics\SpectraSuite\SystemFiles. Highlight this folder and
click
OK.
7.When the Found New Hardware screen appears, click Next.
000-20000-300-02- 201110 15
2: Installation
8.On the Windows Security screen, click Install this driver software anyway.
9. When the driver installation is successful, you will see the following screen:
16 000-20000-300-02- 201110
2: Installation
10. Restart your computer for your driver installation changes to take effect.
000-20000-300-02- 201110 17
2: Installation
18 000-20000-300-02- 201110
Loading...
+ 168 hidden pages
You need points to download manuals.
1 point = 1 manual.
You can buy points or you can get point for every manual you upload.