Roche Cedex Bio System Operator's Manual

Cedex Bio System

Operator’s Manual Software Version 2.1
Document information
Cedex Bio System
Manual version Software version Revision date Changes
1.0 1.0 June 2011 First publication.
2.0 1.0 September 2011 Editorial corrections
3.0 2.0 July 2012 Hardware improvements. Adjustments to reflect latest software version (time indication for running tests and disk space indication).
3.1 2.1 November 2013 The TRL Check feature was introduced. Minor textual adjustments were made.
Edition notice The Cedex Bio instrument is a continuous random-access analyzer intended for the
determination of chemical and biochemical parameters in aqueous solutions. It is optimized for small throughput workloads of approximately 20 samples per day, utilizing photometric analysis and a unit for ion selective electrodes (ISE).
This manual is for users of the Cedex Bio instrument with software version 2.1.
Every effort has been made to ensure that all the information contained in this manual is correct at the time of printing. However, Roche Diagnostics GmbH reserves the right to make any changes necessary without notice as part of ongoing product development.
Any customer modification to the instrument will render the warranty or service agreement null and void.
Intended use The Cedex Bio instrument is a continuous random-access analyzer intended for the
Copyrights © 2011-2013, Roche Diagnostics GmbH. All rights reserved.
Trademarks The following trademarks are acknowledged:
Contact address
Software updates are done by service representatives.
determination of chemical and biochemical parameters in aqueous solutions
For use in quality control/manufacturing process only.
It is important that the operators read this manual thoroughly before using the system.
CEDEX, COBAS, and ISE are trademarks of Roche.
All other trademarks are the property of their respective owners.
Roche Diagnostics GmbH Sandhofer Strasse 116 68305 Mannheim Germany
Made in Switzerland
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Cedex Bio System

Table of contents

Document information 2 Contact address 2 Table of contents 3 Preface 5 How to use this manual 5 Online Help system 5 Conventions used in this manual 6
System Description Part A
1Safety
Safety classification A–5 Safety information A–5 Data security A–10 Disposal recommendation A–11 Legal liability A–12 Safety labels A–13
2 Introduction to the instrument
Overview A–17 User interface A–20 Wizards A–21 Daily operation A–22 Maintenance A–33 System status A–34
3 Hardware
Covers and panels A–39 LEDs A–41 Main components A–43 Hardware overview A–44 Technical specifications A–65
Performing calibrations B–59 Performing QC B–68 Finishing the shift B–77 Logging off B–88 Shutting down the system and switching off the instrument B–88 Using the barcode scanner B–89
6 Special operations
Deleting sample orders B–93 Deleting sample results B–94 Calibration B–95 Deleting QC results B–96 Lot handling B–98 Exporting data B–104 Importing data B–111 Preparing a new disk B–116 Assigning tests to test tabs B–119 Deleting bottle sets from the Inventory list B–120 Refilling printer paper B–122 Removing condensation water from the reagent cooler B–124 Replacing the probe B–125 Connecting and disconnecting the external fluid containers B–127 Adjusting the touchscreen B–131 Cleaning the touchscreen B–131
7 Configuration
Introduction B–135 Applications B–137 Configuration B–157
4 Software
Maintenance Part C
Introduction A–69 Screen layout A–70 Display items A–71 Workflows and wizards A–72
8 General maintenance
Overview C–5
Maintenance actions C–8 Working with the user interface A–73 Key screens A–82 Color interpretation for LEDs A–117
Troubleshooting Part D
Buttons A–119
9 Messages and alarms
Operation Part B
About messages D–5
Message screen D–5
Acoustic signals D–6
5 Daily operation
Introduction B–5
Alarm monitor D–6
List of alarm messages D–10 Starting the shift B–10 Preparing the system B–12 Analyzing samples B–34 Validating sample results B–51
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10 Result flags
About flags D–25 Safety D–27 List of flags D–28
11 Troubleshooting
Introduction D–41 Dealing with exceptional situations D–42 Reacting to messages D–44 Detailed procedures D–46
ISE Part E
12 ISE description
Overview E–5 Hardware E–9 Basic operation E–12 Technical specifications E–13
13 ISE operation
Daily operation E–17 Replacing ISE fluid bottles E–30 Replacing electrodes E–32 Cleaning the ISE tower off the instrument E–36
Cedex Bio System
14 ISE maintenance
Introduction E–41 ISE maintenance actions E–42
15 ISE troubleshooting
Introduction E–69 Safety E–70 List of ISE flags E–71 Reacting to error messages E–80
Glossary and Index Part F
Glossary F–3 Index F–11
Revisions Part G
18 Revisions
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Preface
The Cedex Bio Instrument is a continuous random-access analyzer intended for the determination of chemical and biochemical parameters in aqueous solutions. It is optimized for small throughput workloads of approximately 20 samples per day, utilizing photometric analysis and a unit for ion selective electrodes (ISE).
This manual describes the Cedex Bio system features and general operational concepts, and it provides operating, maintenance, and emergency procedures.
Parts B through D describe the instrument without using an ISE unit, ISE specific informa­tion is given in part E.
How to use this manual
o Keep this Operator’s Manual in a safe place to ensure that it is not damaged and
remains available for use.
o This Operator’s Manual should be easily accessible at all times.
Online Help system
To help you find information quickly, there is a table of contents at the beginning of the manual and each chapter. In addition, a complete index can be found at the end.
The Cedex Bio instrument has a context-sensitive online Help feature to aid in its operating. “Context-sensitive” means that wherever you are located within the Cedex Bio software, choosing Help ( ) displays Help text relating to that area of the software. The online Help offers a quick and convenient way of finding information, such as explanations of screens and dialog boxes and on how to perform particular tasks.
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Conventions used in this manual
Visual cues are used to help locate and interpret information in this manual quickly. This section explains the formatting conventions used in this manual.
Symbols The following symbols are used:
Symbol Used for
a Start of procedure
o List item
e
h Call-up (software navigation path)
Color of display item on the screen
Cross-reference
Tip
Safety alert
Cedex Bio System
Electrical and electronic equipment marked with this symbol are covered by the European directive WEEE.
The symbol denotes that the equipment must not be disposed of in the municipal waste system.
Buttons When used for identification purposes, a generic form of the buttons is used, without
color or navigation indicators.
Screenshots The screen representations shown in this publication are for illustrative purposes
only. The screens do not necessarily show valid data.
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Abbreviations The following abbreviations are used:
Abbreviation Definition
Cfas Calibrator for automated systems
DIL Diluent
DM Data management
DRAM Dynamic random access memory
e.g. Exempli gratia – for example
EMC Electromagnetic compatibility
EN European standard
i.e. Id est – that is to say
IEC International Electrical Commission
ISE Ion selective electrode
LED Light-emitting diode
LIS Laboratory information system
LLD Liquid level detection
n/a Not applicable
QC Quality control
REF Reference solution for ISE unit
ROM Read only memory
SD Standard deviation
SRAM Static random access memory
TRL Test range low (lower limit of measuring range)
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Cedex Bio System
Units
Abbreviation Description
°C degree centigrade
μLmicroliter
μm micrometer
A ampère
cm centimeter
hhour
Hz hertz
LB pound (weight)
in inch
kg kilogram
kVA kilo volt-ampere
L liter
m meter
MB megabytes
min minute
mL milliliter
mm millimeter
nm nanometer
ssecond
Vvolt
VA volt-ampère
V AC volt alternating current
V DC volt direct current
Wwatt
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System Description

1 Safety . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-3
2 Introduction to the instrument . . . . . . . . . . . . . . . . . . . . . . . . . A-15
3 Hardware . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-37
4 Software . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A-67
A
Cedex Bio System 1Safety
Table of contents

Safety

Protecting yourself and the environment
In this chapter, you will find information on the safe operation of the Cedex Bio instrument.
In this chapter
Safety classification ......................................................................................................... A–5
Safety information ........................................................................................................... A–5
Transport ................................................................................................................... A–5
Electrical safety .......................................................................................................... A–5
Optical safety ............................................................................................................. A–6
Mechanical safety ...................................................................................................... A–6
Instrument covers ..................................................................................................... A–6
Operation and maintenance .................................................................................... A–6
Biohazardous materials ............................................................................................ A–6
Waste ..........................................................................................................................A–7
Reagents and other working solutions ................................................................... A–7
Installation ................................................................................................................. A–7
Environmental conditions ....................................................................................... A–7
Power interruption ................................................................................................... A–8
Electromagnetic devices ........................................................................................... A–8
Approved parts .......................................................................................................... A–8
Third-party software ................................................................................................ A–8
Operator qualification .............................................................................................. A–9
Operation over an extended period of time .......................................................... A–9
Cross contamination of sample .............................................................................. A–9
Insoluble contaminants in sample .......................................................................... A–9
Spillage ........................................................................................................................ A–9
Data security ..................................................................................................................A–10
Disposal recommendation ........................................................................................... A–11
Disposal label ........................................................................................................... A–11
Disposal of external components ......................................................................... A–11
Disposal of the instrument .................................................................................... A–11
Constraint ................................................................................................................ A–12
Chapter
1
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Table of contents
Legal liability .................................................................................................................. A–12
Safety labels .................................................................................................................... A–13
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WARNING
CAUTION
NOTICE
WARNING
WARNING
Safety classification
Safety classification
Before you attempt to use the Cedex Bio instrument, you must be fully familiar with the following symbols and their meanings:
Warning
Indicates a hazardous situation which, if not avoided, could result in death or serious injury.
Caution
Indicates a hazardous situation which, if not avoided, may result in minor or moderate injury.
Notice
Indicates a hazardous situation which, if not avoided, may result in property damage.
Safety information
Transport
Electrical safety
Before operating the Cedex Bio instrument, it is essential that you both read and understand the safety information listed below.
Read all Roche safety notices carefully and make sure you understand them.
Injury from heavy loads
You may injure your hands, fingers, or back when putting the analyzer in place. Carry the analyzer according to the transport instructions.
Electrical shock by electronic equipment
Do not attempt to work in any electronic compartment. Installation, service, and repair must only be performed by authorized and qualified personnel.
Electrical safety
Connect the analyzer to grounded power outlets only (IEC protection class 1). All periph­eral devices that are connected to the Cedex Bio instrument must comply with safety standard IEC 60950 for information technology equipment, or with IEC 61010-1, UL 61010­1 for laboratory use instruments.
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WARNING
WARNING
WARNING
WARNING
WARNING
Safety information
Optical safety
Loss of sight
The intense light of the LEDs may severely damage you eyes. Do not stare into the LEDs.
Scanning equipment using LED technology is covered by the international standard IEC 60825-1 LED Safety: Class 1.
Mechanical safety
Personal injury or damage to the analyzer due to contact with instrument mechanism
Do not touch moving parts during instrument operation.
Instrument covers
Personal injury or damage to the analyzer due to contact with instrument mechanism
Keep all covers closed, operate them as instructed on the screen.
Operation and maintenance
Personal injury or damage to the analyzer due to contact with instrument mechanism
Do not touch any parts of the instrument other than those specified. During operation and maintenance of the instrument, proceed according to the instructions.
Biohazardous materials
Infection by biohazardous materials
Contact with samples containing material of human origin may result in infection. All mate­rials and mechanical components associated with samples of human origin are potentially biohazardous.
o Be sure to wear protective equipment. Take extra care when working with protective
gloves; these can easily be pierced or cut, which can lead to infection.
o If any biohazardous material is spilled, wipe it up immediately and apply disinfectant.
o If waste solution contacts your skin, wash it off immediately with water and apply a dis-
infectant. Consult a physician.
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WARNING
WARNING
WARNING
WARNING
Safety information
Waste
Infection by waste solution
Contact with waste solution may result in infection. All materials and mechanical compo­nents associated with the waste systems are potentially biohazardous.
o Be sure to wear protective equipment. Take extra care when working with protective
gloves; these can easily be pierced or cut, which can lead to infection.
o If any biohazardous material is spilled, wipe it up immediately and apply disinfectant.
o If waste solution contacts your skin, wash it off immediately with water and apply a dis-
infectant. Consult a physician.
Reagents and other working solutions
Injury through reagents and other working solutions
Direct contact with reagents, cleaning solutions, or other working solutions may cause personal injury.
When handling reagents, exercise the precautions required for handling laboratory reagents, observe the cautions given in the package insert, and observe the information given in the Safety Data Sheets available for Roche Diagnostics reagents and cleaning solutions.
Skin inflammation caused by reagents
Direct contact with reagents may cause skin irritation, inflammation, or burns.
When handling reagents, be sure to wear protective equipment and observe the cautions given in the package insert.
Installation
Incorrect results or damage to the analyzer due to wrong installation
Follow the specified installation instructions carefully.
Environmental conditions
Incorrect results or damage to the analyzer due to heat and humidity
Use the instrument indoor only.
e
For details on the required environmental conditions, see Environmental conditions on page A-65.
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1Safety Cedex Bio System
NOTICE
WARNING
WARNING
WARNING
Safety information
Power interruption
Data loss or damage to the system due to voltage drop
By a power failure or momentary voltage drop the operation unit or software of this system may get damaged or data loss may occur. Use only uninterruptible power supply.
Electromagnetic devices
Malfunction of instrument and incorrect results due to interfering electromagnetic fields
Devices that emit electromagnetic waves may cause the instrument to malfunction. Do not operate the following devices in the same room where the system is installed:
o Mobile phone
o Transceiver
o Cordless phone
o Other electrical devices that generate electromagnetic waves
Approved parts
Third-party software
Class B FCC rule compliance
This equipment has been tested and found to comply with the limits for Class B digital device, pursuant to part 15 of the FCC Rules. These limits are designed to provide reason­able protection against harmful interferences when the equipment is operated in a resi­dential area. However, this equipment generates, uses, and can radiate radio frequency energy and, if not installed and used in accordance with the present manual, may cause harmful interference to radio communications.
The electromagnetic environment should be evaluated prior to operation of the device.
Malfunction of instrument and incorrect results due to nonapproved parts
Use of nonapproved parts or devices may result in malfunction of the instrument and may render the warranty null and void. Only use parts and devices approved by Roche Diagnos­tics.
Malfunction of instrument and incorrect results due to third-party software
Installation of any third-party software that is not approved by Roche Diagnostics may result in incorrect behavior of the system. Do not install any nonapproved software.
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WARNING
CAUTION
WARNING
WARNING
NOTICE
Safety information
Operator qualification
Incorrect results or damage to the analyzer due to wrong operation
Operators are required to have a profound knowledge of relevant guidelines and norms as well as the information and procedures contained in the Operator’s Manual.
o Do not carry out operation and maintenance unless you have been trained by Roche
Diagnostics.
o Carefully follow the procedures specified in the Operator’s Manual for the operation
and maintenance of the system.
o Leave maintenance that is not described in the Operator’s Manual to trained service
representatives.
o Follow standard laboratory practices, especially when working with biohazard material.
Operation over an extended period of time
Fatigue due to long hours of operation
Looking at the monitor screen over an extended period of time may lead to fatigue of your eyes or body. Take a rest for 10 to 15 minutes every hour to relax. Avoid spending more than 6 hours per day looking at the monitor screen.
Cross contamination of sample
Incorrect results due to carryover
Traces of analytes or reagents may be carried over one test to the next. Take adequate measures (e.g. sample aliquoting) to safeguard additional testing and to avoid potentially false results.
Insoluble contaminants in sample
Incorrect results and interruption of analysis due to contaminated samples
Insoluble contaminants in samples may cause clogging or pipetting volume shortage and deterioration in measurement accuracy. When loading samples on the instrument, make sure that samples contain no insoluble contaminants such as fibrin or dust.
Spillage
Malfunction due to spilled liquid
Any liquid spilled on the instrument may result in malfunction of the instrument. If liquid does spill on the instrument, wipe it up immediately and apply disinfectant.
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CAUTION
Data security
Data security
Unauthorized access and data loss due to malicious software and hacker attacks
Portable storage media can be infected with and transmit computer malware, which may be used to gain unauthorized access to data or cause unwanted changes to software.
The Cedex Bio instrument is not protected against malicious software and hacker attacks.
The customers are responsible for IT security of their IT infrastructure and for protecting it against malicious software and hacker attacks. Failure to do so may result in data loss or render the Cedex Bio instrument unusable.
Roche recommends the following precautions:
o Allow connection to authorized external devices only.
o Ensure that all external devices are protected by appropriate security software.
o Ensure that access to all external devices is protected by appropriate security equip-
ment.
o Do not copy or install any software on the Cedex Bio instrument unless it is part of the
system software or you are instructed to do so by a Roche service representative.
o If additional software is required, contact your Roche service representative to ensure
validation of the software in question.
o Do not use the USB ports to connect other storage devices unless you are instructed to
do so by official user documentation or a Roche service representative.
o Exercise utmost care when using external storage devices such as USB flash drives,
CDs, or DVDs. Do not use them on public or home computers while connecting to the
Cedex Bio instrument.
o Keep all external storage devices in a secure place and ensure that they can be
accessed by authorized persons only.
e
For further information, contact your Roche service representative.
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Cedex Bio System 1Safety
WARNING
WARNING
Disposal recommendation
Disposal recommendation
Malfunction of instrument and incorrect results due to software modifications by the customer
The Cedex Bio instrument uses open source software. For details see document CedexBio System License Notes.
The Cedex Bio instrument has been designed to be operated with the unmodified soft­ware as shipped. The user assumes full responsibility for changing any part of the open source software, which excludes any liability of Roche Diagnostics Ltd.
This program is distributed without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. For details see document CedexBio Sys­tem License Notes.
The portions of used open source software are part of MIKRAPs CPU-X168LCD/NET board support package and may be obtained from Mikrap AG (info@mikrap.ch).
All electrical and electronic products should be disposed of separately from the municipal waste system. Proper disposal of your old appliance prevents potential negative consequences for the environment and human health.
Disposal label
Electrical and electronic equipment marked with this symbol are covered by the European directive on waste electrical and electronic equipment (WEEE) 2002/96/EC.
The symbol denotes that the equipment must not be disposed of in the municipal waste system.
Disposal of external components
External components such as the scanner and the ISE power supply, which are marked with the crossed-out wheeled bin symbol, are covered by the European Directive 2002/96/EC (WEEE).
These items must be disposed of via designated collection facilities appointed by govern­ment or local authorities.
For more information about disposal of your old products, contact your city office, waste disposal service or your local service representative.
Disposal of the instrument
The instrument must be treated as biologically contaminated hazardous waste. Final dis­posal must be organized in a way that does not endanger waste handlers. As a rule, such equipment must be sterile before it is passed on for final disposal.
For more information contact your local service representative.
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1Safety Cedex Bio System
Legal liability
Constraint
It is left to the responsible laboratory organization to determine whether control unit components are contaminated or not. If contaminated, treat in the same way as the instrument.
Legal liability
It is the users’ sole responsibility to determine whether they activate the TRL Check feature, and if they do so to define the lower measuring range in accordance with the country specific requirements. If the users activate the TRL Check feature, they are also responsible for validation of the ranges they define.
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Cedex Bio System 1Safety
A
B
Safety labels
Safety labels
Read all safety labels on the instrument and equipment.
The following illustration shows where on the instrument labels are displayed.
A This label on the electrode block of the ISE unit indicates that
there is a danger of hazardous situations arising within the vicinity
of this label, which may result in death or serious injury. The rele-
vant laboratory procedures on safe use must be observed.
Figure A-1 Safety labels on the Cedex Bio instrument
In addition to safety labels on the instrument, there are safety notes in the corresponding parts of the Operator’s Manual.
These safety notes give more detailed information about potentially hazardous situations that may arise during daily operation or when carrying out maintenance procedures.
When working with the instrument, be sure to observe both the safety labels on the instrument and the safety notes in the Operator’s Manual.
B This label on the main cover indicates that there are potential bio-
hazards within the vicinity of this label, which may result in death
or serious injury.
The relevant laboratory procedures on safe use must be observed.
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Safety labels
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Cedex Bio System 2 Introduction to the instrument
Table of contents

Introduction to the instrument

What you need to know before you start
In this chapter, you will find basic information on the features that are relevant for working with the Cedex Bio instrument.
In this chapter
Overview ......................................................................................................................... A–17
Principles of operation ........................................................................................... A–19
User interface .................................................................................................................A–20
Wizards ........................................................................................................................... A–21
Daily operation .............................................................................................................. A–22
Overview .................................................................................................................. A–22
Reagent and diluent handling ............................................................................... A–24
Calibration ............................................................................................................... A–26
Calibration type ................................................................................................ A–26
Calibration sequence ........................................................................................ A–27
Calibration status of a set ................................................................................. A–28
Calibration result storage ................................................................................ A–28
Validating calibration results .......................................................................... A–28
Calibration procedures .................................................................................... A–28
Quality control (QC) .............................................................................................. A–29
Sample handling ...................................................................................................... A–30
Order handling ........................................................................................................ A–31
Results ....................................................................................................................... A–33
Maintenance .................................................................................................................. A–33
System status ..................................................................................................................A–34
Chapter
2
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Table of contents
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Cedex Bio System 2 Introduction to the instrument
WARNING
Overview
Overview
The Cedex Bio instrument is a continuous random-access analyzer intended for metabolite analysis in mammalian cell cultures and microbial fermentation. The Cedex Bio instrument is a low throughput, bench top instrument used in manufacturing and quality control of pharma biotech environments. Core test parameters cover sodium, potassium, glucose, lactate, lactate dehydrogenase, ammonia, glutamine, and glutamate.
Only trained personnel working in a professional laboratory environment may operate the Cedex Bio instrument.
Incorrect results or damage to the analyzer due to wrong operation
Operators are required to have a profound knowledge of relevant guidelines and norms as well as the information and procedures contained in the Operator’s Manual.
o Do not carry out operation and maintenance unless you have been trained by Roche
Diagnostics.
o Carefully follow the procedures specified in the Operator’s Manual for the operation
and maintenance of the system.
o Leave maintenance that is not described in the Operator’s Manual to trained service
representatives.
o Follow standard laboratory practices, especially when working with biohazard material.
Features The Cedex Bio instrument offers small laboratories the following advantages:
o High analytical performance
The same bulk reagents, 12-wavelength photometer and disposable cuvettes generate results that are highly correlated to other cobas instruments.
o Efficient operation
Cooled, exchangeable reagent disks ensure economical reagent use; disposable cuvette segments allow for easy cuvette loading and removal.
o High reliability, low maintenance
Innovative "low impact" instrument design and software-driven preventive maintenance improves up-time and reduces maintenance costs.
o Adaptable user interface
The built-in color touchscreen, process-driven software, and reagent and sample barcode entry adapts to users of different skills and access levels.
o High safety standards
Built-in safety devices, such as level detection, tube bottom detection, cuvette quality control, and ISE clot detection anticipate potential hazards during operation.
o Flexible sampling
Eight on-board sample positions accommodate virtually any type of sample carrier, and enable continuous sample placing and removal during operation.
o Data management
Bidirectional RS-232 and USB ports, on-board thermal printer, and drivers offer the latest in data management capabilities.
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2 Introduction to the instrument Cedex Bio System
A
L NM
B D
I
F
E
G
H
O
J
K
C
Overview
Measuring principles Measurements are performed by means of an absorbance photometer and an ISE
(ion selective electrode) module that uses ion selective potentiometry.
A first look at the instrument
A Left service flap (covers wash station, ISE
tower, tubing)
B Main cover (covers rotor, reagents, cuvettes,
photometer unit)
C Main switch D Transfer head (holds probe) E Rear service flap (covers computer boards,
power supply, degasser)
F Sample area LED G Sample area (space for 8 sample tubes)
Figure A-2 The Cedex Bio instrument
H Touchscreen I Fluid connectors J Right service flap (covers photometer unit,
sample area)
K Printer panel L Main cover LED M Paper slot N Release button for printer panel O USB connector (not shown)
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Cedex Bio System 2 Introduction to the instrument
Overview
Principles of operation
The Cedex Bio main instrument uses absorption photometry for determining the amount of absorbance in a fluid. The absorbance is used to calculate the concentration in the solution.
Loading the sample The operator identifies the sample, places it on the instrument, and defines the order.
(If you work with a host system, the order is defined automatically.)
Measuring process The measuring process for each test consists of forty regular cycles, each lasting 18
seconds. In each of these cycles, a measurement is taken, irrespective of what other actions take place during this cycle. The application definitions determine what is done in which cycle, and they also define which results are taken into account for the result calculation.
With each cycle, a new test can be started.
The basic process works as follows:
1. Checking the cuvette.
A measurement is taken to check the quality of the cuvette.
2. Pipetting reagent (R1) to the cuvette.
After each pipetting action, the system performs a wash cycle to minimize carry­over. During this cycle, the probe and tubing are flushed with water and cleaner.
3. Wait.
The fluid needs to reach the prescribed temperature. Such a phase can last several cycles.
During the wait cycles, activities for other tests are performed.
4. Pipetting the next fluid.
Typically, this would be the sample. The details are defined in the application definitions.
5. Wait.
6. Pipetting the next fluid.
7. Wait.
8. And so on.
Calculating the results The test result is calculated on the basis of the photometric measurement results.
During this process, various checks are performed to ensure that the whole measuring process was technically correct. If values are above or below predefined limits, the test result is flagged.
The results are stored on the system. This includes both the forty measurement results (raw data) and the calculated test result.
Sequence of processing For a given sample, the tests are processed in the order defined by the time required
for their processing (number of cycles), starting with the one that takes the longest. This order can be altered manually by defining a specific process sequence list.
Status of the measuring process At any stage of the measuring process, the user can check its status on the screen.
Result data management The system provides storage space for the results of one working day. For backup
purposes, the results must be exported to an external storage device once a day.
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E
G
F
D
C
B
A
User interface
User interface
The Cedex Bio instrument is equipped with a touchscreen, an on-screen keyboard and four global action buttons. LEDs and acoustic signals let you know when it is safe to add or remove samples, reagents and other fluids.
With buttons and other display items, “traffic light” color coding is used: Green means OK, yellow: watch out, you need to do something, and red means that your intervention is required for processing to continue.
The screens have a clear and consistent layout and are easy to use. The topics are divided in the proven work areas: Overview for order and fluid handling, Workplace for result handling and details on orders, and Utilities for administration tasks.
e
For details on the user interface, see Chapter 4 Software.
The following is an example of a screen. It contains the full range of display items.
A The status line displays the system status. B Tabs represent the major work areas. C The headline characterizes the content or
function of the screen. If the screen is part of
a sequence of screens (wizard), the headline
tells you where you are within this sequence.
D The working area displays the main content
of the screen.
E The buttons vary depending on the content
of the working area and the screen position
within a series of steps (wizard).
Figure A-3 Example of a screen
F The Help button leads to concise information
that is relevant to the current screen and
situation.
G The global action buttons represent the
functions that are permanently available:
Start, Stop, Alarm, Line Feed. The LEDs next
to them point to their status.
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Wizards
Wizards
Screens help you perform your tasks. If not all steps of a task can be performed from one screen, the workflow is realized as a sequence of screens, a so-called wizard. Cedex Bio wizards do not usually force you to perform a task at a certain stage, they just make your work easier.
e
For details on workflows, see Workflows and wizards on page A-72.
When intervention is required On the screen, there are several methods of telling when your intervention is
required:
o Buttons and texts are color coded.
Everything is fine.
To ensure smooth operation, you need to perform some task.
The current process or action has not started yet or stopped. You need to do something for it to start or continue.
o Screens can contain instructions. For example the text may ask you to place the
sample on the sample area or to remove a reagent bottle from the reagent disk.
o Messages inform you about the status of current actions.
o A permanent alarm monitor alerts you to events you should know about.
Wizards There are three major wizards: Prepare wizard, Orders wizard, and End Shift wizard.
With most tasks that involve more than one step, such as exchanging reagent or other fluid bottles, you are supported by wizards.
Prepare wizard The Prepare wizard guides you through the tasks that need to be performed at the
beginning of a shift. When this wizard is done, the system is ready for processing orders.
Orders wizard The Orders wizard guides you through the process of creating and changing orders.
End Shift wizard The End Shift wizard guides you through the tasks that need to be performed at the
end of the day or to prepare the instrument for handing over to another operator.
Individual tasks can be performed outside the wizards
Most tasks that make up a workflow can be performed without using a wizard.
If you perform a task independently, you first need to navigate to the appropriate screen and then start the task from there; whereas if you use a wizard, the appropriate screen is displayed automatically.
Using the wizards also ensures that all necessary steps are performed and in the right order.
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Daily operation
Overview
Daily operation includes the routine tasks that are required to prepare and monitor the system, and to analyze samples.
When you switch on the system, it performs several checks to make sure that all preconditions are met, for example that all covers are closed or that there are cuvettes available. It then performs self-tests to ensure that all modules function properly.
At the end of the startup phase, the screen is updated to display the current status of the system.
The following table gives an overview of the tasks you might need to perform during daily operation.
Task Steps Navigation
Starting the system 1. Switch on the system.
1
Logging on the system Overview > Logon
2
Preparing the system Start the Prepare wizard. Overview > Prepare
3
Defining orders Start the Orders wizard. Overview > Order (or Overview > STAT)
4
Monitoring the progress n/a Overview
5
With wizard As individual steps
1. Check the external fluid containers. Overview > >
2. Perform the maintenance actions that are due.
3. Load the reagent disk. Overview >
4. Check the reagents. Overview >
5. Check the cuvettes. Overview >
6. Perform mixing Overview > > test >
7. Perform calibrations that are due. Workplace > Calibrations > >
1. Identify the sample. n/a
2. Select the tests. n/a
3. Place the sample. n/a
4. Start the run.
Utilities > Maintenance
Validating results 1. View results. n/a Workplace > Result Review
6
2. Handle flagged results. n/a Workplace > Result Review >
... > Repeat
... > Rerun
3. Accept results. n/a Workplace > Result Review > >
Accept
Table A-1 Overview of the daily operation tasks
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Task Steps Navigation
With wizard As individual steps
Performing calibrations
7
Performing individual calibrations
Performing all due calibrations
Performing controls
8
Performing
Default QC
Performing an individual QC measurement
Performing all due QC measurements
Table A-1 Overview of the daily operation tasks (Continued)
1. Start the wizard. Workplace > Calibrations >
2. Select the test. n/a
3. Prepare and place the calibrators. n/a
4. Start the calibration.
5. Validate the calibration results. Workplace > Calibrations >
6. Remove the calibrators.
1. Start the wizard. Workplace > Calibrations >
2. Select all tests with due calibrations.
n/a or Select all tests with calibration due within the forecast period.
3. Prepare and place the calibrators. n/a
4. Start the calibration.
5. Validate the calibration results. Workplace > Calibrations >
6. Remove the calibrators.
1. Start the wizard. Overview > Order >
2. Select a control and place the tube.
n/a Repeat until there are no controls left on the screen.
3. Start the QC measurement.
4. Validate the QC results. Workplace > QC Status >
5. Remove the controls. n/a
1. Start the wizard. Workplace > QC Status >
2. Select a test. n/a
3. Select a control and place the tube.
n/a Repeat until there are no controls left on the screen.
4. Start the QC measurement.
5. Validate the QC results. Workplace > QC Status >
6. Remove the control.
1. Start the wizard. Overview > Order >
2. Select a control and place the tube.
n/a
>
Repeat until there are no controls left on the screen.
3. Start the QC measurement.
4. Validate the QC results. Workplace > QC Status >
5. Remove the controls.
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A
B C
Daily operation
Task Steps Navigation
With wizard As individual steps
Finishing the shift 1. Check for unfinished orders. Workplace > Orders
9
Choose > Not Finished
2. Check for non-validated results. Workplace > Result Review
Choose > Not Accepted
3. Check for non-transmitted results.
(If working with a host system only.)
4. Start the End Shift wizard. Overview > End Shift
5. Perform the daily backup. Utilities > Export > Database
6. Export the full results. Utilities > Export > Results
7. Clean up the database. Workplace > Orders >
8. Perform the maintenance actions that are due.
9. Replace cuvettes. Overview >
10. Check the external fluid containers. Overview > >
11. Remove the reagent disk (if last shift).
12. Log off the system. Overview > button with your user name
13. Shut down the system and switch off the instrument (if last shift).
Table A-1 Overview of the daily operation tasks (Continued)
n/a n/a
Workplace > Result Review
Choose > Not Sent to Host
Workplace > Result Review>
Workplace > QC Status >
Workplace > QC History >
Workplace > Calibrations >
Utilities > Maintenance
Overview > >
Reagent and diluent handling
A Reagent disk B Reagent bottle with barcode
Figure A-4 Equipment for reagent handling
Reagent disk On the instrument, the reagents are stored on a reagent disk. It provides space for 27
bottles, allowing up to 14 reagent sets to be installed on the disk, assuming that most tests need two reagents. Extra diluents and cleaners are also loaded on the reagent disk.
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You can work with up to eight different reagent disks on one Cedex Bio instrument.
You always load and remove bottles while the disk is on the instrument. (The system needs to know exactly what is loaded on the disk.)
When you finished running tests, you can remove the whole reagent disk, place it in a reagent disk container, and store it in a refrigerator.
Bottles Cedex Bio reagents, diluents and extra cleaners are provided in uniform bottles. They
are supplied with two dimensional barcodes and placed on the reagent disk with their cap removed.
Chimneys Chimneys are bottle inserts that reduce evaporation. For reagents that are especially
sensitive to concentration changes, Roche recommend using chimneys on the reagent bottles.
To generally reduce evaporation, you may use chimneys on all reagent bottles.
Reagent set Up to three reagents can be required to perform a certain test. These reagents are
handled in reagent sets. You can define more than one reagent set for a test, but only one can be active.
A reagent set is defined as soon as its first bottle is loaded. From this moment on, whenever you remove or replace a reagent, you do so for all reagents of the set.
Each diluent or cleaner bottle is treated as a separate reagent set.
Volume detection For each reagent set, the number of available tests is continuously calculated.
Figure A-5 Remaining tests indication
Periodic mixing Reagents may have a mixing interval defined. This interval is checked by the system
every 30 minutes, and mixing is performed without removing the reagent bottles from the reagent disk.
For a reagent set that contains more than one reagent for which mixing is defined, the shortest interval of all reagents of the set is used for all reagents.
Tests are blocked if any reagent they use requires mixing.
Diluents Both, system water and dedicated diluents are used. System water is kept in the
external water container, dedicated diluents are supplied in reagent bottles and placed on the reagent disk.
Cleaners Both, a system cleaner and dedicated cleaners can be used. The system cleaner is kept
in the external cleaner bottle, dedicated cleaners are supplied in reagent bottles and placed on the reagent disk.
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Calibration
Calibration is the process that establishes, under specified conditions, the relationship between values indicated by the analytical instrument and the corresponding known values of an analyte.
Periodic calibration is required because the concentration of reagents can change over time.
Reagents are typically calibrated with a two-point calibration, measuring the predefined value of a multicalibrator and of system water. Some reagents are calibrated using a set of calibrators.
On the Cedex Bio instrument, reagents are handled as sets of up to three reagents. (You always load and unload all reagents of a set.) As a consequence, all reagents (bottles) of a set are calibrated when performing calibration.
The system checks when calibration is due.
Each reagent set must have accepted calibration results to be available for use in tests.
When a calibration is due depends mainly on two definitions, the calibration type and the calibration sequence.
Calibration type
The calibration types Set and Lot define the manner in which the system determines whether there is a valid calibration result for a particular reagent set.
Set calibration Set calibration results are valid for the calibrated set only. They can be generated from
any reagent set.
Lot calibration Lot calibration results are valid for the reagent set they were calibrated with and for
all subsequent reagent sets of the same lot. Usually, lot calibrations are generated by calibrating the first reagent set of a new lot. There can only be one accepted lot calibration result for the reagents of a given lot.
Let us suppose that you place the first reagent set of a new lot and calibrate it straight away. Let us further assume that subsequent control measurements suggest that a new calibration is required. Within the first 24 hours of placing a set on the system, you can recalibrate it, and possibly existing lot calibration results of this set are superseded. When this period has elapsed you can no longer change the lot calibration results. (To generate new lot calibration results, you would have to delete the existing results and then calibrate a new reagent set.)
Lot calibration is relevant if you work with the calibration sequence [Each Lot and Interval].
The following table illustrates the two calibration types in an example.
Assumptions:
o Sequence: Each Lot and Interval.
o Interval: 5 days.
(Note that the interval (re)starts when a set is calibrated as a result of the interval expiring or a new lot being started.)
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Day Trigger/Event Task Result used Set Cal. type Cal. Usage
1 NA 1. Place first reagent set of new lot.
2. Calibrate set L1/1.
2 Reagent empty. 1. Remove set L1/1.
2. Place new set L1/2.
Reagent empty. Replace set whenever it is empty. Result 1 Set Current
5 Interval expired. Calibrate current set L1/n. Result 2 L1/n
6 Reagent empty. Place new set L1/n+1. Result 1 L1/n+1
8 Reagent empty.
New lot.
Reagent empty. Place new set L2/2. Result 3 L2/2
10 Interval expired. Calibrate current set L2/n. Result 4 L2/n
11 Reagent empty. Place new set L2/n+1. Result 3 L2/n+1
Table A-2 Example for set change and calibration types
1. Remove set L1/n+1.
2. Place new set, which is the first set of a new lot.
3. Calibrate set L2/1.
Result 1 L1/1 Lot Current
Result 1 L1/2
L1/1
L1/n-1
L1/n
Result 3 L2/1
L1/1
L1/n+1
L2/1
L2/n-1
L2/n
Set
Lot
Set
Set
Set
Set
Lot
Lot
Set
Set
Lot
Set
Set
Set
Set
Current
-
Current
Obsolete
Current
Obsolete
Current
Obsolete
Obsolete
Current
-
Current
Obsolete
Current
Obsolete
Calibration sequence
No Interval You perform calibration whenever you think fit. Use this value if you are sure that the
Interval Only You perform calibration only when the interval has expired.
Each Lot and Interval You perform calibration whenever the fist reagent of a new lot is loaded and then
Each Set and Interval You perform calibration whenever a new reagent is loaded and when the interval has
The calibration sequence is an application definition. It defines the manner in which the system determines when a calibration is due.
Roche recommend not to change the calibration sequence.
The calibration interval defines the on-board stability of a reagent.
One of the following sequences applies to each reagent set:
reagent is stable until it is empty and you replace it with a new one. Calibration is due whenever a new reagent set is loaded on the instrument.
each time the interval has expired.
In this case, the interval is related to the date when the lot calibration was generated, and it (re)starts whenever you calibrate a reagent set (as a result of interval expiry or starting a new lot).
You can turn off the interval check by defining its duration as 0 (zero).
expired.
The interval starts again whenever you calibrate a reagent set because the interval had expired or a new lot was started.
You can turn off the interval check by defining its duration as 0 (zero).
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<xyz>
Daily operation
Calibration status of a set
Each reagent set has one of the following calibration statuses:
CU (current) denotes that the set is on board and that its calibration results are currently
used.
OB (obsolete) denotes that the set’s calibration results are no longer used.
This status applies for example to the following situations:
o The set was removed and it is empty.
o The set was removed and it is not empty. It was removed more than 30 days ago.
SB (standby) indicates that the set’s calibration results are not currently used.
This status applies for example to the following situations:
o A new set was loaded and calibrated while an identical set was still in use (pre-
calibration).
o The set was removed not more than 30 days ago and it is not empty.
Calibration result storage
Validating calibration results
Calibration procedures
The current and up to five obsolete calibration results are stored on the system. If there are more than five obsolete calibration results, the oldest obsolete calibration results are automatically deleted as part of the daily end of shift activities.
Applications define checks for ranges and limits. If these are exceeded, the results are flagged.
Each new calibration result has to be validated. If flags were generated, you must determine their cause and decide whether to accept the result, rerun the calibration or continue using the old calibration results.
You can automatically accept unflagged results and results with flags that are contained in a specific list of flags that should be ignored.
e
See Editing the acceptable flags list on page B-160.
There are three basic procedures for performing calibration:
o Calibrating all reagent sets that need calibrating
o Calibrating all reagent sets that will need calibrating during the forecast period
o Calibrating individual reagent sets
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Forecast period The forecast period is a configurable period of time. Calibrations that fall due within
this period will be performed collectively.
e
See Calibration on page B-165.
Typically you would set this period to fit your shift length, for example 8 hours. This would enable you to prepare the instrument before the work shift starts and so avoid having to interrupt sample processing for performing calibrations.
Precalibration At any given time, there is only one accepted calibration result for each test. You can,
however, install and precalibrate one reserve reagent set. This is done, for example, to ensure continuous sample processing.
Quality control (QC)
QC is performed at regular intervals to check the integrity of the whole measuring system. For each test, up to three controls are defined. The results are compared against predefined ranges or values and then interpreted accordingly.
Control A control is a sample that has been measured using all tests it is associated with, in
order to define the ranges and values that determine the correct functioning of the instrument. This is typically done both for the normal and the pathological analyte concentration.
When QC is due With regards to when it needs to be performed, QC is divided in the following types:
o QC After Cal
The QC measurement is due after calibration of the test.
o Interval QC
QC is due whenever its interval has expired. QC measurements of this type are performed in a batch, typically once or twice a day.
o Default QC
QC is performed at certain times during routine operation. This is done to fit in with laboratory processes and procedures.
Ways of performing QC With regards to how QC is performed, the following methods are provided:
o Default QC
Default QC is an automated process for performing multiple QC measurements
at the time when you define the QC orders. This is the ideal method if you want to perform QC at certain times and days.
This method only applies to tests whose controls are defined to be performed as part of Default QC. Therefore, if you intend to work with the Default QC function, you need to configure the tests accordingly.
Default QC follows a streamlined procedure where the necessary QC orders are automatically defined as soon as you identify a control. An order is defined for each test for which this control is defined, provided the test is currently active on the system. A wizard helps you select the controls, and a placement list supports you in preparing and loading the controls.
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WARNING
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o Interval QC
This method applies to tests whose controls have an interval defined.
Interval QC is a process that is suitable both for performing a single QC measurement and for performing all QC measurements that are due. You can select all tests that require QC simply by pressing a button. (This selection also reflects QC of the type QC After Cal.) A wizard helps you select the controls, and a placement list supports you in preparing and loading them.
Validating QC results Each new QC result has to be validated. If flags were generated, you must determine
their cause and decide whether to accept or ignore the result.
You can automatically accept unflagged results and results with flags that are contained in a specific list of flags that should be ignored.
e
See Editing the acceptable flags list on page B-160.
If you ignore a QC result you exclude the result from further QC result calculations such as QC History statistics.
Sample handling
You can place up to eight sample tubes on the sample area.
A Sample area LED. A green LED indicates that you should place a tube, a blinking yellow LED
that you should keep clear of the sample area.
Figure A-6 Sample area with sample tubes
Sample types The Cedex Bio instrument can process aqueous samples from mammalian and
bacterial cell cultures and fermentation.
Incorrect results due to inadequate sample preparation
Specimen containing clots may obstruct the probe. Specimen containing bubbles or foam may cause level detection errors and air pipetting. Consequently, incorrect results may be generated.
Take adequate care when preparing the samples.
Incorrect results due to insufficient fluid
Insufficient fluid may lead to inaccurate pipetting and consequently to incorrect results.
Always fill the tubes with enough fluid that at least the defined dead volume of fluid is left when pipetting is complete.
e
See Tubes on page A-53.
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Daily operation
Sample tubes The Cedex Bio instrument can use both primary and secondary tubes (cups).
You can use any type of primary tube, as long as their dimensions lay within prescribed limits. Roche recommend using approved cups only.
e
See Tubes on page A-53.
Probe damage due to not removing primary tube caps
The probe is not designed to pierce tube caps. It can get damaged when trying to pierce tube caps.
Always remove the caps of primary tubes before placing them on the instrument.
Sample ID The sample ID is an identifier of up to 23 alphanumeric characters that is unique
within a whole organization. It identifies the sample and is also used for host communication.
Sample IDs are defined either by scanning a barcode or by typing them manually.
Because there is limited space when displaying lists on screens, Roche recommend to limit the ID to 13 characters.
Sample barcode You can use sample tubes with or without barcode.
Removing sample tubes You can remove sample tubes as soon as pipetting is complete.
Order handling
Order Mode The order mode reflects the way in which you organize the tests on the test selection
Dilution Pre-dilution is used when performing calibration.
Post-dilution is used when measuring samples.
(The dilution factor is part of the application definition and therefore does not need to be defined by the operator.)
screen.
Choose Easy if the reagents fit on one or two reagent disks and you work with one test panel on the screen (You can fit up to 25 tests and profiles on this panel).
Choose Full if you distribute the reagents across several (up to eight) reagent disks and if you predominantly work with specific groups of tests. You can assign up to 20 tests and profiles to each panel (tab).
Order ID The order ID is an identifier of up to 23 alphanumeric characters that is unique
within the laboratory. The order ID identifies the order and links it to the sample.
Order and sample IDs are often identical. Using separate IDs makes sense when working with a host system.
Order IDs are defined either by scanning a barcode or by typing them manually.
Because there is limited space when displaying lists on screens, Roche recommend to limit the ID to 13 characters.
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Host connectivity The Cedex Bio instrument can be connected to an external laboratory information
system (LIS) and a host computer for downloading order information and uploading results.
If the instrument is connected to a host system, the following setups can be configured:
o Downloading order information
When you identify a sample using the barcode scanner, the appropriate order information is automatically assigned to the order on the system. (The order information was downloaded previously.)
o Performing host queries
When you identify a sample using the barcode scanner, a query is sent to the host, asking for the order information of the sample in question. This information is then downloaded to the Cedex Bio instrument and automatically assigned to the sample on the system.
o Transmitting results
You can have results automatically transmitted to the host as soon as they are accepted.
Routine orders Routine orders are normally defined on the Overview tab. The software guides you
through the process of assigning the tests to the sample and placing the sample tube on the instrument.
STAT orders STAT (short turn around time) orders are handled in the same way as routine orders,
except that their tests are processed next, irrespective of the scheduling of routine order tests.
Defining orders There must be at least one free sample tube position when defining an order. You are
guided by the software when ordering the tests and placing the samples.
There can be only one order for each test and sample.
Modifying orders The process for changing an order is similar to that of defining it. You first identify
the sample and then change the tests. You can change an order as long as its processing has not yet started.
It is always possible to add a further test to an existing order.
Deleting orders At the end of a shift, you should delete all orders that are defined on the system. This
is to free storage space for the next shift. Deleting the orders is an integral part of the End Shift wizard. (Deleting an order also deletes the corresponding sample results.)
You can export the data to a USB stick and store them on a computer.
Controlling the run Controlling the execution of test runs is done via the global action buttons.
Press to start the run.
Press to stop the run.
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Maintenance
Results
You can check the results on the screen as soon as they are calculated.
Units Results are normally given in your lab units. The units can be configured.
Flags Result flags are test-specific. They indicate that the limit of an internal check was
exceeded or not reached.
System flags point to the status of the result within the process of analysis; for example, they tell you that the result has not been accepted or that is has not been transmitted to the host successfully.
Printing results You can print all or selected results on the built-in printer.
Validating results All results need to be validated (result accepted, test rerun or repeated).
Result flags help you identify critical results and point to possible actions that need to be taken.
Each test must have accepted calibration results; tests whose associated calibration results are not accepted cannot be performed.
Ratio results The user can manually define ratios. Ratio results are handled like any other sample
result, with the exception that they cannot be accepted by the user. They are automatically accepted if all their constituent results are accepted.
Repeating and rerunning tests If a result is flagged, you may decide to run a test again. You can either perform
exactly the same test (Repeat) or perform it with a different predefined dilution (Rerun).
Storing results The Cedex Bio instrument is designed to hold the sample results of one day’s
analyzing. Therefore, you need to back up the data regularly to an external medium. (Backing up results is an integral part of the End Shift wizard.)
The QC results of the previous and the current months are stored on the system.
Up to five calibration results are stored on the system for each test.
Maintenance
Completing maintenance actions correctly and on time helps to ensure smooth and uninterrupted operation of your instrument.
Maintenance scheduling The Cedex Bio instrument facilitates performing the maintenance actions in bundles
at the times that suit your laboratory work processes. To that purpose, you can define in the configuration settings one day of the week as your maintenance day.
e
For information on scheduling maintenance actions, see Scheduling maintenance actions on page B-158.
All maintenance actions can be performed any time.
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Interval For most maintenance actions a fixed maintenance interval is defined. (You cannot
change this interval.) This is the basis upon which the system calculates the date when the actions need to be performed.
The interval timers and counters are reset whenever you confirm that the maintenance action has been performed.
Maintenance actions without predefined intervals are performed whenever necessary, or they are triggered by another maintenance action.
Due date The due date is the last possible maintenance day. This is the date you see when you
check the status of maintenance actions.
Ensuring smooth operation Performing all due maintenance actions during the daily Prepare or End Shift phase
ensures that routine operation does not have to be interrupted for performing maintenance actions.
System status
The Cedex Bio instrument provides several means of indicating the status of the various parts and processes:
o Color coded LEDs on the instrument inform you when and when not to open
covers or place sample tubes.
e
See Color interpretation for LEDs on page A-117.
o The colors of buttons inform you whether you need to intervene.
e
See Color concept on page A-72.
You can check the meaning of a button using the online Help .
o Buttons on the Overview tab lead to detailed information on the status of selected
processes and hardware items.
o Messages on the screen provide information on individual tasks and events.
o The text in the Status line provides information on the status and activities of the
analyzer and photometer unit.
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System status
The following system statuses are defined:
Status Comment
Standby The user and host interfaces remain active, as do the reagent
cooling system, fluid system, and the cuvette heating.
Maintenance A maintenance action is being performed. The system is not
available for performing tests.
Diagnostics A system diagnostics action is being performed. The system is
not available for performing tests.
Operating Processing is in progress.
Power Up After switching on, the system performs initialization and
functional test.
Power Down Regular shutdown is in progress.
Stopped Processing has stopped. User intervention is required to allow
the system to resume regular operation.
E-Stopped The system has performed an emergency stop (E. Stop). This
could be due to hardware failure or because any of the safety devices have requested an emergency stop.
Table A-3 System statuses
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Table of contents

Hardware

The parts and how they work
In this chapter, you will find information on the main hardware components of the Cedex Bio instrument.
In this chapter
Covers and panels ......................................................................................................... A–39
LEDs ................................................................................................................................ A–41
Main components ......................................................................................................... A–43
Hardware overview ....................................................................................................... A–44
Sample area .............................................................................................................. A–44
Fluid system ............................................................................................................. A–45
Probe and syringe ............................................................................................. A–46
Syringe assembly ............................................................................................... A–46
Wash station ...................................................................................................... A–47
External fluid connectors ................................................................................. A–47
Transfer unit ............................................................................................................ A–48
Fluid containers ....................................................................................................... A–50
Waste containers ............................................................................................... A–50
Water container ................................................................................................ A–51
Cleaner bottle .................................................................................................... A–52
Reagent bottles .................................................................................................. A–53
Tubes .................................................................................................................. A–53
Cuvettes .............................................................................................................. A–54
Cuvette segments .............................................................................................. A–55
Handling cuvettes ............................................................................................. A–55
Reagent handling .............................................................................................. A–56
Rotor ......................................................................................................................... A–56
Reagent disk ............................................................................................................. A–57
Reagent disk container ........................................................................................... A–58
Reagent cooler ......................................................................................................... A–58
Cuvette ring ............................................................................................................. A–59
Barcode scanner ...................................................................................................... A–59
Printer ....................................................................................................................... A–61
Chapter
3
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Absorbance photometer ........................................................................................ A–61
Connectors ............................................................................................................... A–63
Fuses ......................................................................................................................... A–64
Technical specifications ............................................................................................... A–65
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H
Covers and panels
Covers and panels
The following figure shows the removable panels and the lids that can be opened.
A Left side panel B Left service flap C Main cover D Transfer head cover
Figure A-7 The Cedex Bio instrument
Transfer head cover Provides access to:
o Transfer mechanism
o Probe
Shut down the system and switch off the instrument before you open this cover.
Left service flap Provides access to:
o Wash station
o Tubing
o Internal waste tank
o Initialization plate
Handle as instructed during maintenance actions, or shut down the system and switch off the instrument before handling it.
E Rear service flap F Right side panel G Right service flap H Printer panel
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Main cover Provides access to:
o Rotor
o Reagent disk
o Cuvettes
o Reagent bottles
o Photometer unit
You open this cover whenever you need to handle cuvettes, reagent bottles, or the reagent disk. A green LED indicates that you should place an item, a yellow LED that you should not open the main cover.
To open the cover, press the release button at the underside of the front of the cover.
When you should close the cover an acoustic signal is sounded and the
on the System Status screen
Rear service flap Provides access to:
o Computer boards
o Power supply
o Transfer unit
o Degasser
This flap should be opened by service representatives only.
Shut down the system and switch off the instrument before you open this cover and remove the two side panels before opening this flap.
Right side panel Provides access to:
o Syringe assembly
Remove this panel as instructed during maintenance actions or shut down the system and switch off the instrument before you remove it.
Right service flap Provides access to:
o Photometer unit
o Sample area
o Touchscreen
o Data management computer
system icon
turns red.
Open this panel as instructed during maintenance actions or shut down the system and switch off the instrument before you open it.
Printer panel Provides access to:
o Printer paper.
You can open this flap any time as long as the printer is not printing.
To open the panel, press the release button.
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A
C
LEDs
LEDs
LEDs are placed on key positions on the Cedex Bio instrument. They inform you whether you can perform certain actions.
Interpreting the LED colors
A Sample area LED B Global button LEDs (from top: Start LED,
Stop LED, Alarm LED)
Figure A-8 The Cedex Bio instrument
LED Color Meaning
Main cover LED
Off No activities in this area. You can open the main
C Main cover LED
cover.
User intervention is required, for example you are expected to place or remove a bottle.
The system is performing some action. Do not handle the cover.
An acoustic signal is sounded when the cover is open while the system is in Operating state. You can adjust the volume (Utilities > Configuration > System > Volume).
Sample area LED
Off No activities in this area. You can remove sample
tubes.
You are expected to place a sample tube.
Blinking The transfer head is approaching. Do not place
your hand or any object in the sample area.
Start LED
Off You cannot start the measuring process.
You can start the measuring process.
Table A-4 LEDs and their meaning
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LED Color Meaning
Stop LED
Alarm LED
Table A-4 LEDs and their meaning
Off Pressing does not have any effect.
Pressing leads to the various stop options.
Off There are no unconfirmed alarm messages.
There is at least one unconfirmed alarm message. You need to deal with it as soon as possible.
There is at least one unconfirmed alarm message. You need to deal with it immediately, processing may not be able to continue unless you do so.
An acoustic signal is sounded when an alarm is generated. You can adjust the volume (Utilities > Configuration > System > Volume).
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A B C D E
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G
H
Main components
Main components
The following figure illustrates the main components of the Cedex Bio instrument.
A Rotor B Transfer unit C Photometer unit D PCB main board
Figure A-9 Main hardware components
E Degasser F Sample area G Display H Syringe assembly
Rotor Provides a cooled area for reagents (cooling assembly) and a heated channel for
cuvettes. It moves the containers to the correct position for loading, removal, pipetting, and measuring.
Transfer unit Pipettes sample, reagent, and other fluids from their source to target containers such
as cuvettes or the wash station.
Photometer unit Contains the absorbance photometer used for making absorbance measurements.
PCB main board Controls the instrument hardware.
I Front USB port J External fluid rack K Printer
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Hardware overview
Fluid system (not shown) Transports all fluids around the instrument, including sample, reagent, calibrator,
control, diluent, cleaner, system water, and waste.
Syringe assembly Performs the aspiration and dispensing of fluids. This includes the supply of water
and cleaner to clean the probes in the wash station after every pipetting action, which prevents carry-over between tests.
Degasser Removes possible air bubbles from the system water.
Sample area Eight positions for holding sample tubes. This area is also used for placing
calibrators, controls, and auxiliary fluids.
Display The touchscreen provides the user interface for controlling and managing the
Cedex Bio instrument.
Front USB port This port is used for the USB stick when backing up data or loading data on the
system.
Hardware overview
Sample area
The sample area provides eight positions for placing sample tubes. You can place primary and secondary tubes.
e
See Tubes on page A-53.
A The LED indicates that the transfer tower is approaching or that you should place a sample
tube.
Figure A-10 Sample area with sample tubes
Place the samples when instructed by the system to do so. For calibrators, the system tells you on which position to place them, with the other fluids, you can choose any free position.
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D
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IHG
F
B
NOTICE
Hardware overview
Fluid system
The fluid system consists of all the valves, pumps, tubing, syringe, fluid sensors, water and waste containers, the wash station, and the probe. It transports all fluids around the instrument, including sample, reagent, calibrator, control, diluent, cleaner, system water, and waste. The fluid system also delivers the correct amounts of fluids to the cuvettes.
A Wash station B Transfer head (with probe) C Pumps D Degasser E Syringe assembly
Figure A-11 Fluid system
F Internal waste tank G Cleaner bottle (red cap) H Water container (white) I Waste container (yellow)
To prevent overflow of the internal waste tank when the system is in Standby status, the waste is periodically pumped to the external waste container. (Condensation can build up in the cooling assembly while the system is in Standby status.)
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A
C
Hardware overview
Probe and syringe
Syringe assembly
A Fluid sensor B Probe
Figure A-12 Probe and syringe
C Syringe
The probe is connected by tubing to:
o The syringe to ensure the pipetting of the required amounts of fluid.
o The external water container and cleaner bottle to ensure supply of fresh water
and cleaner.
e
See maintenance action Clean the probe manually on page C-12. See maintenance action Deproteinize the probe on page C-10. See Replacing the probe on page B-125.
The syringe assembly controls the aspiration and dispensing of fluids. It also controls the supply of water and cleaner to clean the probes in the wash station after every pipetting action, which prevents carry-over between tests.
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Hardware overview
Wash station
Figure A-13 Wash station
The probe is washed after each pipetting. It is lowered in the wash station and then cleaner is pumped through the probe to wash it in and outside. Next water is pumped through the probe to flush away the cleaner.
The wash station is connected by tubing to the internal waste container.
External fluid connectors
The three external fluid containers must be properly connected before you switch on the Cedex Bio instrument.
A Water connector B Cleaner connector with protective sleeve
Figure A-14 External fluid connectors
C Waste connector
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C
B
Hardware overview
Transfer unit
The transfer unit moves the probe to the correct positions for all pipetting and cleaning actions.
The following figure shows the major parts of the transfer unit.
A Transfer head B Probe holder carriage
Figure A-15 Major elements of the robotic transfer unit
C Transfer X guide rail
Transfer head The transfer head moves horizontally (along the X-axis); the probe moves up and
down (Z-axis), and it performs a rotational movement for mixing the cuvette and reagent bottle content.
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Transfer head arrest When the transfer head is obstructed in its horizontal movement, it immediately
stops. All pipetting and processing actions stop.
A Mixing motor B Transfer Z motor C Probe holder
Figure A-16 Transfer head
D Probe E Mixer movement axis
Mixing motor The mixing motor is mounted on the carriage. When running, it generates a circular
movement of the probe. This movement is used for mixing the content of cuvettes and reagent bottles.
Probe The probe has a flat tip. This is required for tube bottom detection. Because such a
probe cannot pierce a bottle cap, all bottles must be placed on the instrument with their caps removed.
Level detection A sensor detects when the probe enters a fluid. On the basis of this level, the system
establishes whether there is enough fluid to perform the scheduled pipetting action.
Tube Bottom detection A physical sensor is activated as soon as the probe touches the bottom of a sample
tube.
This mechanism also works when the probe touches an object outside the tube. In both cases, probe action stops and an appropriate alarm message is generated.
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A
C
Hardware overview
Fluid containers
The following table shows which container is used for which fluid:
Fluid Container(s) Position
Sample Tube Sample area
Control Tube Sample area
Calibrator Tube Sample area
Diluent Reagent bottle Reagent disk
System cleaner External cleaner bottle External fluid rack
Cleaner Reagent bottle Reagent disk
Reagent Reagent bottle Reagent disk
Water Bottle External fluid rack
Waste Bottle External fluid rack
Table A-5 Fluid containers, what they are used for and where
The term tube includes all kinds of tubes, as long as their dimensions lay within prescribed limits. It also includes secondary tubes (cups). See Tubes on page A-53.
Waste containers
Internal waste tank The internal waste tank collects the waste from the wash station and the ISE unit, if
A Tubing adapter B External waste container
Figure A-17 Waste container
C Internal waste tank
this is used. It also collects the condensation from the cooling assembly in the rotor.
The internal waste tank is connected by tubing to:
o External waste container
o Wash station
o Reagent cooler (condensation)
o ISE unit
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B
Hardware overview
External waste container The yellow external waste container is placed on the external fluid rack. It is designed
to be washed and reused.
Because the system periodically performs wash actions, an external waste container must be connected at all times. Therefore, when you empty the waste container, you immediately replace it with the spare container and then empty the original container. (The instrument is supplied with a spare waste container.)
There is no active level monitoring for the external waste container, but you are notified if the external waste container has not been emptied for more than one day.
The external waste container is connected by tubing to the internal waste tank.
e
See Connecting and disconnecting the external fluid containers on page B-127. See Checking the status of the external fluid containers on page B-15. See maintenance action Clean the water and waste containers on page C-16.
Water container
The white water container is positioned on the external fluid rack. Attached to the cap is a suction tube, which is equipped with a water filter.
There is no active level monitoring for the water container, but you are notified if the water container has not been refilled for more than one day.
The water container is designed to be washed and refilled.
A Tubing B Container
Figure A-18 Water container
C Water inlet filter
The water container is connected by tubing to:
o Wash pump
o Syringe assembly
o Probe
e
See Connecting and disconnecting the external fluid containers on page B-127. See Checking the status of the external fluid containers on page B-15. See maintenance action See maintenance action Replace water inlet filter on page C-19.
Clean the water and waste containers on page C-16.
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B
Hardware overview
Cleaner bottle
The cleaner bottle is positioned on the external fluid rack. It is designed to be replaced when empty.
Level monitoring for the cleaner bottle is based on the number of cleaning and pipetting actions that were performed.
A Tubing adapter B Cleaner bottle
Figure A-19 Cleaner bottle
When delivered, the bottle has a white cap. During installation, this is replaced by a red cap with tubing attached to it (tubing adapter).
The cleaner bottle is connected by tubing to:
o Syringe assembly
o Probe
e
See Connecting and disconnecting the external fluid containers on page B-127. See Checking the status of the external fluid containers on page B-15.
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Hardware overview
Reagent bottles
The Cedex Bio instrument works exclusively with reagent bottles that are equipped with a two-dimensional barcode.
Each bottle holds up to 20 mL of fluid. The actual volume depends on the test.
Place the bottles on the reagent disk as instructed by the software.
Reagents are handled in reagent sets. A set consists of up to three reagents. You always load and replace all bottles of a set.
Tubes
Chimneys
Chimneys are bottle inserts that reduce evaporation.
For reagents that are especially sensitive to concentration changes, Roche recommend using chimneys on the reagent bottles.
To generally reduce evaporation, you may use chimneys on all reagent bottles.
Incorrect results due to declining reagent quality
If the application definitions (see package insert) recommend the use of chimneys, the corresponding calibration intervals apply to conditions when working with chimneys.
Roche recommend using chimneys whenever this is recommended on the test insert.
The Cedex Bio instrument can use both primary and secondary tubes (cups).
You can use any type of primary tube, as long as their dimensions lay within prescribed limits.
o Maximum height (including secondary tube): 102 mm
o Minimum height: 70 mm
o Maximum outside width: 16.3 mm
o Minimum outside width: 11.8 mm
Incorrect results due to insufficient fluid
Insufficient fluid may lead to inaccurate pipetting and consequently to incorrect results.
Always fill the tubes with sufficient fluid that at the end of the pipetting process at least the dead volume of fluid is left.
e
See Tubes on page A-53.
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Hardware overview
Incorrect results due to inappropriate tube and cup placement
Inappropriate tube and cup placement may lead to inaccurate pipetting and consequently to incorrect results.
Make sure that the primary tubes are placed centrally and perfectly vertically in the holders in the sample area and that they are inserted firmly.
Make sure that secondary tubes are placed centrally on the primary tubes and that they rest fully on them.
Probe damage due to not removing primary tube caps
The probe is not designed to pierce tube caps. It can get damaged when trying to pierce tube caps.
Always remove the caps of primary tubes before placing them on the instrument.
The following table lists a few typical tubes that are suitable, and it gives the dead volume for each of them.
Tube name Dead volume
13 x 75 mm 500 μL
13 x 100 mm 500 μL
16 x 75 mm 700 μL
16 x 100 mm 700 μL
Table A-6 Typical examples of suitable tubes
Cuvettes
Roche recommends using sample cups because they need much lower dead volume compared to primary tubes. The following table lists recommended cups.
Cup name Dead volume Sample volume Placement
1.5 mL reaction tube 100 μL 1.5 mL Using adapter cups
Roche Diagnostics Standard false bottom tube
Table A-7 Typical examples of suitable tubes
75 μL 2.5 mL Directly on sample area
All optical measurements are made using the same transparent plastic containers, called cuvettes. Samples are automatically transferred from a sample tube to the cuvettes on the cuvette ring.
Cuvettes are disposable to eliminate carry-over.
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B
C
WARNING
A
Hardware overview
Cuvette segments
Each segment holds 10 cuvettes.
Handling cuvettes
A Segment handle B Cuvette segment holding individual cuvettes
Figure A-20 Cuvette segment
C Cuvettes
Cuvettes are supplied in boxes containing cuvette sets. Each set contains a number of cuvette segments. This way, the cuvettes can easily be handled without touching them.
Loading and removing cuvettes is guided by the system software. When handling is required, the rotor moves the cuvette segments to the cuvette port, where you can load or remove them. You handle one segment at a time. Cuvette segments are placed in the cuvette ring of the rotor.
e
See Preparing cuvettes on page B-28.
Incorrect results due to scratched or soiled cuvettes
Scratches and impurities on the cuvettes distort the measurements.
Do not touch the cuvettes and make sure they do not touch other items when handling them.
A Hold the segment by its handle. Make sure not to touch the cuvettes.
Figure A-21 Handling a cuvette segment
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Hardware overview
Reagent handling
Loading and removing reagents is guided by the system software. When handling is required, the rotor moves the bottles to the reagent port, where you can load or remove them. You handle one reagent bottle at a time. Reagent bottles are placed on the reagent disk.
e
See Preparing the reagents on page B-22.
Rotor
Figure A-22 Handling a reagent bottle
The rotor provides the following features:
o Space for up to 27 reagent bottles (on the reagent disk)
o Space for up to 60 cuvettes (in the cuvette ring)
o A cooled environment for reagents (reagent cooler)
o A temperature controlled environment for samples (cuvette ring)
o A synchronized transport mechanism to move reagent bottles and cuvettes to the
pipetting, loading, and measuring positions.
A Reagent disk B Reagent cooler
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Figure A-23 Main rotor elements
C Temperature controlled cuvette ring (not
visible)
D Cuvette segment
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B
A
NOTICE
Hardware overview
Rotational movement The bottles and cuvettes are positioned in a manner that they can be moved to the
various positions by a rotational movement. There are positions for loading and removal (reagent and cuvette ports), pipetting, and measuring.
A Pipetting positions B Reagent port
Figure A-24 Reagent port on the reagent disk
Reagent disk
The reagent disk holds up to 27 reagent bottles. It is designed to be handled as one unit, including the bottles. When not used on the instrument, the reagent disk is placed in a container and stored in a refrigerated place.
Figure A-25 Reagent disk
Damage to the reagent disk
The reagent disk is designed to handle reagents while it is loaded on the instrument. The cover is equipped with a locking mechanism.
Always remove and load reagents while the reagent disk is on the instrument and by using the software supported procedures.
e
See Preparing the reagent disk on page B-21.
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A
A
D
C
C
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Hardware overview
Reagent disk ID You can use up to eight different reagent disks on one Cedex Bio instrument. Each
reagent disk is equipped with numbered tabs. For automatic disk identification by the instrument, one—and only one—of these tabs is removed. The number of this removed tab is the disk ID. When you label the disk, make sure that the number on the label corresponds to that of the removed tab.
Reagent disk container
Reagent cooler
A Reagent disk IDs. There are eight possible
IDs.
B Disk label. The number must correspond to
the reagent disk ID.
Figure A-26 Reagent disk ID
C Identification tabs D The tab has been removed for automatic
disk recognition
For storage outside the instrument, the reagent disk is placed in a container. This reduces evaporation of reagents and prevents their contamination.
The reagent cooler holds the reagent disk with its reagent bottles. The temperature in the cooler is kept within the range of 6 to 10°C.
A Reagent cooler
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Figure A-27 Reagent cooler
e
See maintenance action Clean reagent disk and sample area on page C-14.
Cedex Bio System 3Hardware
A
B
WARNING
A
B
Hardware overview
Cuvette ring
The cuvette ring holds up to 6 cuvette segments, each containing 10 cuvettes.
A Cuvette ring B Cuvette segment
Figure A-28 Cuvette ring
Barcode scanner
Cuvettes fit neatly in the cuvette ring, without touching the walls when being moved along the ring.
e
See Preparing the reagents on page B-22. See maintenance action Clean reagent disk and sample area on page C-14.
A hand-held barcode scanner is used for reading barcoded labels.
Loss of sight
The intense light of the LEDs may severely damage you eyes. Do not stare into the LEDs.
Scanning equipment using LED technology is covered by the international standard IEC 60825-1 LED Safety: Class 1.
A Barcode scanner B Scanner connector on the instrument
Figure A-29 Hand-held barcode scanner
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Connect to the lower COM2 port
Always connect the barcode scanner to the lower of the two serial communication con­nectors (B).
e
For information on how to use the barcode scanner, see Using the barcode scanner on page B-89.
The following containers are always supplied with barcodes:
o Reagent bottles
o Diluent bottles
o Auxiliary fluids (diluents, cleaners etc.)
Sample tubes can be used with or without barcoded labels.
Reagent bottle barcode On the reagent bottles, barcode of the PDF417 format is used.
The barcode contains the following information:
o Part ID
o Lot number
o Expiration date
o Reagent volume
o Serial number of bottle
o Test data
Sample barcode The following barcode types are supported for sample tube identification:
o Codabar
o Codabar 2 of 7
o Code 3 of 9
o Code 128
o EAN
o Interleaved 2 of 5
o UPC (A, E)
A sample barcode must include a checksum at the end.
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B
C
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Hardware overview
Printer
The Cedex Bio instrument has a built-in thermal printer with a 112 mm paper roll. The printer is used for example for printing placement lists, results, maintenance action instructions, and status information on various items such as the loaded tests.
Absorbance photometer
Absorbance photometer
A Panel release button B Paper slot
Figure A-30 Printer
e
See maintenance action Refilling printer paper on page B-122. See To clear the paper jam on page D-46.
C Printer panel
The Cedex Bio main instrument uses the absorbance photometry measuring method.
A Photometer unit
Figure A-31 Photometer unit
The measurements are taken without removing the cuvette from the rotor.
Halogen lamp The Halogen lamp is mounted on a holder for easy replacement. The system informs
you when you need to replace the lamp.
e
See maintenance action Replace photometer lamp on page C-24.
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Wavelengths for the absorbance
photometer
Measurement principles
For each cuvette, the absorbance photometer measures light intensity at 12 different wavelengths:
340 nm 449 nm 520 nm 629 nm
378 nm 480 nm 552 nm 652 nm
409 nm 512 nm 583 nm 659 nm
e
See Principles of operation on page A-19.
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C
A
D
A
E
F
G
H
I J K
Hardware overview
Connectors
A Power supply B Data and communication connectors C Fluid connectors D Front USB port (not shown) E Serial communication connector F Barcode scanner connector
Figure A-32 Connectors
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G Maintenance connectors (Do not remove the
cable.)
H USB 2 connector (for troubleshooting) I Water connector J Cleaner connector K Waste connector
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A
B
Hardware overview
Fuses
Electrical shock by electronic equipment
Do not attempt to work in any electronic compartment. Installation, service, and repair must only be performed by authorized and qualified personnel.
The mains fuses are situated at the rear of the instrument, above the power connector; the internal fuses are situated on the right side of the instrument, at the top of the connector panel.
A Power connector with T6.3 A H 250 V fuse B Low voltage fuses (T3.15 A)
F1: Heating system
F2: Motors
F3: Cooling assembly
F4: Photometer unit and LEDs
Figure A-33 Fuses
e
See To change the mains fuses on page D-47. See To change a low voltage fuse on page D-49.
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Technical specifications
Technical specifications
Every effort has been made to ensure that all the information contained in these specifica­tions is correct at the time of printing. However, Roche Diagnostics reserves the right to make any changes necessary without notice as part of ongoing product development.
Physical dimension
Power requirements
Power requirements ISE unit
Measurement principles
Width 720 mm
Depth 550 mm
Height 480 mm
Weight Approximately 35 kg
Line voltage 100-125 V and 200-240 V (-15%, +10%)
Line frequency 50 Hz (±5%) and 60 Hz (±5%)
Power consumption 250 VA
Insulation coordination Installation category II (IEC 61010-1)
Main fuse T6. 3 A H 250 V
Low voltage fuses T3. 15 A L 250 V
Battery Lithium 3.6 V 2.3 Ah SL-360/S
Line voltage 100-240 V (±10%)
Line frequency 50 Hz (±5%) and 60 Hz (±5%)
Supply voltage 19-24 V DC, Min. 2A
Power consumption 70 VA
Insulation coordination Installation category II (IEC 61010-1)
Absorbance photometry (enzymes, substrates, drugs of abuse)
+
Potentiometry ISE (ion selective electrodes) Na
, K+, Cl
-
Environmental conditions
Throughput
Samples
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Temperature Running conditions: 15-32°C
Transport and storage: -25 to +60°C
Humidity Running conditions: 30-80% at 15-32°C, non
condensing.
Transport and storage: 10-95%, non condensing
Pollution Degree 2 (IEC 61010-1)
Altitude Max. 2000 m above sea level
Photometric 85 tests/h max.; 60 tests/h consolidated (with typical test
panel)
ISE 180 tests/h max.; 60-100 tests/h consolidated
(photometric and ISE mixed)
Sample handling Manually by operator
Time to first result 5-10 min (photometric measurements)
2 min (ISE measurements)
3Hardware Cedex Bio System
Technical specifications
Water purity
Calibrators
Reagent bottles
Cuvettes
Minimum requirements Electrical resistivity [M*cm @ 25°C] > 1
Electrical conductivity [μS/cm @ 25°C] < 1
Silicate (SiO
Particulate matter size [μm] n/a
Bacteria [CFU/mL] < 1000
Whenever the term "purified water" is used in this document, water of at least the quality specified above must be used.
Roche recommends using Reagent Grade water.
Roche calibrators See the package inserts of the reagents.
Reagent bottles 20 mL maximum
Identification Barcode
Barcode 2-D, format PDF417
Number of tests 50-200 tests, depending on the test
Segments of 10 cuvettes Manual insertion and removal of segments
Single use Cuvettes are for single use only
Static incubation temperature in cuvette
37°C ±0.5°C
) [mg/L] < 0.1
2
Photometer
ISE unit
Software data handling
Mass storage
Interfaces
Absorbance photometer 20 W halogen lamp
12 wavelengths 340-659 nm
Sensor Photosensitive diode array
Ion-selective electrode Indirect measurement
Sample volume 15 μL; Dilution 1:6 (1 part sample, 5 parts water)
2 Electrodes
1 ISE Reference Electrode
Operating system o LINUX
CPUs Intel XScale
Memory system o Flash ROM
External USB memory stick
Internal Flash ROM
USB1.1/2.0 For backing up data or loading data on the system
USB1.1/2.0 Modem
2 x RS232 Host, barcode scanner
Na, K
o VX Works
o DRAM o SRAM
(memory stick)
Display
Printer
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Color touchscreen 5.7 inch active matrix (1/4 VGA, 320 x 240 pixels)
Internal thermal printer Paper width 112 mm
Cedex Bio System 4Software
Table of contents

Software

Getting the most out of the instrument
In this chapter, you will find information on how to operate the instrument by using the touchscreen. You will find out about the concept of wizards and you are introduced to the key screens.
In this chapter
Introduction ...................................................................................................................A–71
Screen layout ..................................................................................................................A–72
Display items ................................................................................................................. A–73
Color concept .......................................................................................................... A–74
Workflows and wizards ................................................................................................ A–74
Navigation ................................................................................................................ A–74
Working with the user interface ................................................................................. A–75
Adjusting the touchscreen ..................................................................................... A–75
Scrolling .................................................................................................................... A–75
Expanding and collapsing lists .............................................................................. A–76
Typing text ............................................................................................................... A–76
Using the filter function ......................................................................................... A–78
Printing information .............................................................................................. A–80
Using online Help ................................................................................................... A–81
Messages ................................................................................................................... A–82
Message screen .................................................................................................. A–82
Alarm monitor .................................................................................................. A–82
Key screens ..................................................................................................................... A–84
Overview tab ............................................................................................................ A–84
Sample overview ............................................................................................... A–86
Orders ................................................................................................................. A–87
STAT .................................................................................................................. A–89
Tests .................................................................................................................... A–89
Log off ................................................................................................................. A–91
Prepare ............................................................................................................... A–91
End shift ............................................................................................................. A–91
Cuvette status .................................................................................................... A–91
Chapter
4
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Table of contents
Disk and reagent status .................................................................................... A–92
ISE status ............................................................................................................ A–93
System status ..................................................................................................... A–94
Workplace tab ......................................................................................................... A–96
Orders ................................................................................................................. A–97
Result list ............................................................................................................ A–98
QC status list ................................................................................................... A–100
QC history ....................................................................................................... A–101
Calibrations list ............................................................................................... A–103
Lot data ............................................................................................................. A–104
Lot list ............................................................................................................... A–105
Loadlist ............................................................................................................. A–106
Worklist ........................................................................................................... A–106
Utilities tab ............................................................................................................. A–107
Configuration .................................................................................................. A–108
Maintenance .................................................................................................... A–109
Applications related functions ...................................................................... A–110
Applications ..................................................................................................... A–111
Extra wash cycles ............................................................................................A–112
Host codes ........................................................................................................ A–112
Reagent mixing ...............................................................................................A–113
Process sequence ............................................................................................. A–113
System diagnostics .......................................................................................... A–114
Inventory .......................................................................................................... A–115
Import .............................................................................................................. A–116
Users ................................................................................................................. A–117
Export ............................................................................................................... A–117
Stopping a run ....................................................................................................... A–118
Color interpretation for LEDs ................................................................................... A–119
Buttons .......................................................................................................................... A–121
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Introduction
Introduction
To operate the Cedex Bio instrument, you use its touchscreen. The design and functional concept of the touchscreen support you in the way you work.
The following table lists the major items and characteristics of a Cedex Bio screen and describes their impact on the operation of the instrument.
Screen item Impact on operation
Screen types Distinct screen types make it easy for you to find your way
around the user interface. For example, you immediately know whether you are on a main screen or whether you are reading a message.
Screen layout The consistent layout allows you to quickly find the required
information and to locate the various display items.
Buttons Press a button to open and close a screen or to start a func-
tion.
Colors The color of an item on the screen points to its own status or
that of the item it represents.
The "traffic light" color scheme is used:
o Green: Everything is OK. o Yellow: The system is working, but you need to intervene
for it to continue to do so.
o Red: This item does not work, you need to intervene.
Wizards A wizard denotes a predefined sequence of screens (steps)
that represent a certain task, for example defining an order.
By following the suggested sequence of steps you ensure the proper execution of the tasks and functions.
With some critical tasks, you need to follow the wizard exactly, right through to the end. In other cases, you may skip a step and perform it later.
Table A-8 The major items and characteristics of the touchscreen
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A
D
B C
E
D
F
G
F
D
E
C
B
A
Screen layout
Screen layout
All screens are based on the following layout:
A Status area B Tabs C Headline
Figure A-34 Basic screen layout
D Global action area E Working area F Buttons area
The screen representations shown in this chapter and throughout this manual are for illus­trative purposes only. The screens do not necessarily show valid data.
Depending on the function of a screen, some layout items may not be displayed.
The following is an example of a screen with the full range of display items.
A The status line displays the system status. B Tabs represent the major work areas. You
can switch to any of them any time.
C The headline characterizes the content or
function of the screen. If the screen is part of
a sequence of screens (wizard), the headline
tells you where you are within this sequence.
D The working area displays the main content
of the screen.
Figure A-35 Example of a screen
E The buttons vary depending on the content
of the working area and the screen position
within a series of steps (wizard).
F The Help button leads to concise information
that is relevant to the current screen and sit-
uation.
G The global action buttons represent the func-
tions that are permanently available: Start,
Stop, Alarm, Line Feed. The LEDs next to
them point to their status.
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Display items
Display items
The Cedex Bio screens are made up of text areas and various kinds of display items such as tabs and buttons.
The following table lists the major display items and describes their use.
Display item Use
Button Press a button to start a function. In addition, many
buttons also either open a new screen or close the current screen.
A triangle in the top right corner of a button tells you
that a new screen will be displayed when you press the button; a triangle in the bottom left corner that the current screen will be closed.
Global action
button
List Press a list item to select it. (Its color turns blue.)
The global action buttons are positioned on the right side next to the screen. The LED next to each of the buttons indicates whether the button is active or not.
Use the scroll buttons to display the items that are not visible.
Text Text usually provides information or instructions. It
Tab Tabs are used to group information into units that
Table A-9 Major display items
can be color coded to indicate its importance level.
can be displayed on one screen.
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BA
C
Workflows and wizards
Color concept
The color of buttons and other display items tells you about the status of the display item or the item it represents.
The Cedex Bio instrument uses the familiar "traffic light" color scheme.
Color Meaning for buttons
Green The element is OK.
Yellow Your intervention is required to ensure continuous operation.
Red Your immediate intervention is required. Operation has stopped.
Blue The item is selected.
Table A-10 Color concept
e
For details on the meaning of LED colors, see Color interpretation for LEDs on page A-117.
e
For details on the meaning of button colors, see the explanations in the relevant operation instructions.
Workflows and wizards
Screens and sequences of screens help you perform your tasks. If not all steps of a task can be performed from one screen, the workflow is realized as a sequence of screens, a so-called wizard. Cedex Bio wizards do not usually force you to perform a task at a certain stage, they just make your work easier.
Navigation
Moving from screen to screen You move from screen to screen with the help of buttons.
Knowing where you are Screens on which you perform tasks provide a headline that displays the navigation
path of the current screen.
A Button where you started B Current position in the workflow
Figure A-36 Headline with navigation path
C Headline
e
For an overview of the navigation buttons, see Navigation functions on page A-121.
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CA B
Working with the user interface
Working with the user interface
Adjusting the touchscreen
With a touchscreen, it is important that the point where you press the screen corresponds exactly with its hardware equivalent. If this were not the case, pressing a screen item such as a button might not lead to the expected result.
e
See Adjusting the touchscreen on page B-131.
Scrolling
If not all text or all list elements fit on one screen or display area, use the scrolling function to display the hidden content.
A You are on the first page. You can scroll
down.
B There is text both before and after the
currently displayed text. You can scroll up
and down.
Figure A-37 Scroll bars
C You are on the last page. You can scroll up.
Scroll to the previous page.
Select the previous line and scroll if necessary.
Select the next line and scroll if necessary.
Scroll to the next page.
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Working with the user interface
Expanding and collapsing lists
In hierarchically structured lists, you initially see only the top level entries. List items that contain (but hide) lower levels of entries are marked with . List items that display lower levels of entries are marked with .
Figure A-38 Hierarchically structured list
a To expand a list
Typing text
1
Select a list item marked with .
2
Press again or press .
3
Use the scrollbar, if required, to display the items you are interested in.
a To collapse a list
1
Select a list item marked with .
2
Press again or press .
There are dedicated screens for typing alphanumeric and numeric characters.
You can choose from the following screens:
o Alphanumeric upper case
o Alphanumeric lower case
o Special characters
o Numeric characters
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A
A
]
Working with the user interface
Numeric keyboard
A Typed text
Figure A-39 Numeric keyboard screen
Delete the last character displayed in the text line.
A-Z Switch to the uppercase alphanumeric keyboard.
Alphanumeric keyboards
A Typed text
Figure A-40 Upper and lowercase alphanumeric keyboard screens
Switch to the lowercase keyboard.
Switch to the uppercase keyboard.
Delete the last character displayed in the text line.
$% Switch to the special characters keyboard.
Press to insert a space.
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]
Working with the user interface
Special characters keyboard
A Typed text
Figure A-41 Special characters keyboard screen
Switch to the lowercase alphanumeric keyboard.
A-Z Switch to the uppercase alphanumeric keyboard.
Delete the last character displayed in the text line.
Using the filter function
a To apply a filter to a list
Press to insert a space.
In many lists you can apply a filter, that is, you can select predefined criteria for generating a selection of entries.
The way to apply a filter is the same in all screens where a filter is available. Here is an example:
1
Display the list.
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Working with the user interface
2
Press .
A screen is displayed for selecting the filter criterion.
A In the status line, the screen is indicated where you pressed .
3
Choose one of the filter options.
4
Press .
The list is displayed again. It now contains only the entries that comply with the criterion you just applied by pressing its button.
After you have applied a filter, the criterion name will appear as part of the List button, for example on screens for deleting data. If you used the Not Accepted filter criterion, the
List button would be called List [Not Accepted].
Figure A-42 List button names
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Working with the user interface
Printing information
On many screens, you can print the contents of the working area on the built-in printer. In many cases, a screen is first displayed for selecting the kind of data you want to print. In these cases, the print button is marked with a triangle in the top right corner .
a To print information
1
Press .
If filter criteria are available, a screen is displayed for selecting what data you want to print. For example:
A In the status line, the screen is indicated where you pressed .
2
Choose one of the print options.
The appropriate data is automatically selected and printed.
Choose > to terminate the printing task, if required.
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A
B
Working with the user interface
Using online Help
The Help button is a permanent feature of all screens.
A The Help button is always in the top right corner of the screen.
Figure A-43 Permanent Help button
a To display the Online Help
1
Press .
A The Legend tab describes the buttons and
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their colors.
Figure A-44
B The Workflow tab provides additional
information on items on the screen or on
actions you can perform.
4Software Cedex Bio System
A
B
Working with the user interface
2
Use the scroll bar to display the hidden information.
e
For details on scrolling, see Scrolling on page A-73.
Messages
Messages are displayed in two ways:
o Immediate feedback on user actions is displayed in a pop-up message screen.
o Information concerning a problem that occurred during operation is reported in
the alarm monitor.
Message screen
Message screens are displayed automatically as soon as the message is generated.
Alarm monitor
Alarm button and LED
Figure A-45 Message screen
Read the message and press to close the screen.
Messages concerning an irregularity that occurred during operation can be viewed in the alarm monitor. The alarm LED alerts you when such messages are generated. It is turned off when all alarm messages are confirmed.
The Alarm button is always active, even if nobody is logged on the system.
A Alarm LED B Alarm button
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B
D
A
C
E
Working with the user interface
Interpreting the alarm LED
No color, off There are no unconfirmed alarm messages.
Yellow There is at least one unconfirmed alarm message. You need to deal with it as soon as
possible.
Red There is at least one unconfirmed alarm message. You need to deal with it
immediately, processing may not be able to continue unless you do so.
Acoustic signal An acoustic signal is sounded when an alarm is generated. You can adjust the volume
(Utilities > Configuration > System > Volume).
a To display alarm messages
1
Press .
2
Use to limit the number of messages that are contained in the list.
3
Select the message you are interested in.
Alarm message
Detailed alarm message
A Alarm ID B Total number of messages in the list. C Display the previous alarm message.
Figure A-47
4
Press to display the detailed message.
D Problem description and short remedy
suggestion
E Display the next alarm message.
e
For details on handling alarm messages, see Reacting to alarm messages on page D-7.
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A
B
Key screens
Key screens
The screen representations shown in this chapter and throughout this manual are for illus­trative purposes only. The screens do not necessarily show valid data.
The main screen is divided into tabs. These tabs represent distinct work areas.
f The Overview tab is your main work area when performing the daily routine tasks.
o Use the Workplace to gain information on orders and the corresponding results.
You can also start the lot handling functions from this tab.
o Use the Utilities tab to perform tasks that are not normally part of the routine
analysis workflow. Typically, these would be administration and maintenance tasks.
The following sections describe the key screens of these tabs and point out the main tasks you can perform on them.
Overview tab
The Overview tab is your main work area when performing the daily routine tasks.
A Tube icons B Status of current order processing
Figure A-48 Overview tab
Show details about the order for this sample.
STAT Define STAT orders.
Order Define routine orders.
C Buttons
Tests Check the status of the currently installed tests.
Log off, (Log on) Log off or on the system.
If somebody is logged on, your user name is displayed, for example admin; if nobody is logged on, Log on.
Prepare Perform the preliminary tasks at the beginning of a shift.
End Shift Perform the necessary tasks when ending the shift.
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Key screens
Check the status of the reagent disk.
The reagents are OK.
Fewer than 10% of tests are left for a reagent set, or its expiration date has passed.
No or unidentified disk on board.
A reagent set is not complete or a reagent is empty.
Check the status of the cuvette segments currently loaded on the rotor.
More than one segment is available.
The last available cuvette segment is in use.
No cuvettes are available.
System Status The System Status button displays both the icon and the color of one of the buttons
of the underlying system status screen (see System status on page A-92).
The icons are first prioritized by color, first priority being red, followed by yellow and green, and then according to the sequence in which they are listed below.
This button can show either of the following icons.
Analyzer (main cover)
Reagent cooler and cuvette ring temperature
Sample area ventilation
External fluid containers
Maintenance
Printer
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B
A
1
1
1*
10
1!
1!
1
1+
1*
11
1?
Key screens
Sample overview
A Sample tube buttons B Open orders
Figure A-49 Sample tube status on the Overview tab
C Results
The number in the button indicates the position on the sample area.
A sample tube button with a wide edge symbolizes a STAT order.
All tests are completed and their results are accepted.
All tests are pipetted.
The number below the sample tube button indicates the estimated time to completion. You can remove the sample tube, the time to completion disappears when you do so.
All tests are completed but not yet accepted.
All remaining tests are blocked for one of the following reasons:
o There is not enough sample fluid.
o The sample is not identified.
There is no sample on this position.
Tests are ordered. Processing has not yet started.
Tests are ordered, processing has started.
The number below the sample tube button indicates the estimated time to completion.
The sample is identified, but no tests were ordered yet.
If working in Order Query Mode: The order could not be obtained from the host.
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Key screens
Orders
f Overview > Order
Press Order to define routine orders.
The process of defining an order, and consequently which screens are displayed, depends on how your Cedex Bio instrument is integrated in your laboratory infrastructure (barcodes, host connection).
Identifying samples
f Overview > Order
Typing the sample ID
Figure A-50
Order Interval QC.
Order Default QC.
f Overview > Order
(If you work with barcodes, additionally press .)
Figure A-51
e
For information on how to use the keyboard screens, see Typing text on page A-74.
Order Interval QC.
Order Default QC.
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B
C
CA
Key screens
Selecting tests, profiles, and ratios,
f Overview > Order > identify sample
AEasy mode test-board, all tests fit on one
screen.
B Tabs marked with an asterisk contain
selected tests.
Figure A-52 Test selection screens
CFull mode test-board. The tests are grouped
in tabs.
Tabs are used to group information into units that can be displayed on one screen. The system administrator can define up to six test tabs, name them and assign tests, profiles, and ratios to them.
The tests, profiles, and ratios are sorted alphabetically. Profiles and ratios precede the tests, and they adopt the color of their tests.
The test is on board and ready for use.
The test has already been pipetted.
The test is blocked.
The expiration date of the test has passed.
There are only few tests left.
A QC is due or its result has not been accepted.
A more recent version of the application has been imported.
The test is defined but not on board.
A required diluent or cleaner is not on board.
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B
Key screens
Display a screen that contains information on the status of each test.
STAT
f Overview > STAT
Press STAT to define urgent (short turn-around time) orders.
The process of defining a STAT (short turn around time) order is identical to that of defining a routine order. The difference lies in the scheduling of the tasks. When a STAT order is defined, it will be the next order to be processed, irrespective of what routine orders already exist. Existing STAT orders are finished first.
Tests
Displaying the test overview
f Overview > Tests
Tabs The tabs are displayed if you work with the order mode Full. They represent user-
defined test panels. If you work with the order mode Easy, all tests are on one panel and there are no tabs.
A Test selection screen in order mode Easy. B Test selection screen in order mode Full.
Figure A-53 Test selection screen
The color of a test button represents its status:
The test is on board and ready for use.
The test is blocked for one of the following reasons:
o The calibration is due or failed.
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Key screens
o For the reagent set, the number of available tests is 0, or a reagent bottle is missing
(incomplete reagent set).
o Initial calibration is required.
The expiration date of the test has passed.
There are only few tests left.
A QC is due or its result has not been accepted.
A more recent version of the application has been imported.
The test is not on board.
A required diluent or cleaner is not on board.
Display detailed information on the status of this test.
Display a list of all defined tests, together with information on their status.
Handle the reagent disk that is currently on board.
Displaying test details
f Overview > Tests > test button
A Status description of the test
Figure A-54 Details on a test
The color of the text indicates whether you need to react to the information, and if so, with which urgency you need to deal with the issue.
Calibration Information on the calibration status.
Quality control Information on the QC status.
Tests on disk Total number of tests that are currently available. (There might be more than one
reagent set for this test on board.)
Tests ready to run Number of tests that could be performed, taking into account all disks known to the
system. (The reagent sets have been calibrated and are ready for use.)
Print the test status information.
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Key screens
Show the fluids that were used for generating this result, together with their lot information.
Profiles are user defined sets of tests. They are represented like any other test.
Log off
f Overview > button with your user name
Log off the system.
You can log off any time, even while the system is processing orders.
Prepare
f Overview > Prepare
Start the Prepare wizard to perform the preliminary tasks at the beginning of a shift.
End shift
f Overview > End Shift
Cuvette status
Start the End Shift wizard to perform the tasks necessary for ending the shift.
f Overview > .
A Overview of required and available cuvettes
Figure A-55 Cuvette status
The six cuvette segments are represented by buttons. The number in the button indicates how many cuvettes are free to
be used.
Press a segment button to exchange the corresponding segment.
The segment buttons are color coded:
All cuvettes are used.
Up to two cuvettes are free to be used.
More than two cuvettes are free to be used.
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B
<xyz>
5
Key screens
Disk and reagent status
f Overview >
A A plus (+) indicates that there is already an active identical reagent set on board. (This icon is
displayed as soon as the first bottle of the set is loaded.)
B The number to the left of the button indicates the number of free positions on the disk.
Figure A-56 Reagent sets loaded on the reagent disk
The color of a reagent set button represents the status of the set:
The reagent set is on board, but it is blocked for one of the following reasons:
o The number of available tests is 0.
o The set is incomplete.
o The test needs calibrating.
There are fewer than 10% of tests are left for this set.
The expiration date has passed.
The reagent set is on board and ready for use.
o There is no application that uses this reagent set.
o A required diluent or cleaner is not on board.
Display detailed information on the status of this test.
Load a reagent set. The number to the left of the button indicates the number of free positions on the disk.
Display a list with all tests on board, together with information on their status.
On the list, the following abbreviations are used to indicate the status of the reagent set:
o C: Calibration missing
o E: Empty
o I: Incomplete
o N: Not used
o L: Low
o X: Expired
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Key screens
Handle the reagent disk.
ISE status
f Overview > .
Figure A-57 ISE status
Na, K, Ref Display detailed information on the status of the electrode.
The expiration date of an electrode has passed.
The electrode is ready for use.
Calibration required. (Does not apply to the reference electrode.)
After installing a new electrode, the Electrode Service maintenance action is due.
Cal, Ref Display detailed information on the status of the ISE fluid bottle.
No fluid registered by a sensor. (Operation has stopped.)
Calibration required.
The fluid level in the bottle is low. (Operation will proceed until one of the sensors detects that there is no fluid.)
There is sufficient fluid.
Display the placement list for actions that are due, for example calibration or electrode service.
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Key screens
System status
f Overview > , or , or , or , or , or
The system status button on the Overview tab displays both the color and the icon of one of buttons of the system status screen. (The icons are first prioritized by color, first priority being red, followed by yellow and green, and then according to the sequence in which they appear on the screen.)
Figure A-58 System status
Check the texts for the status of hardware items and on IDs of installed software.
Status of the instrument.
The main cover is open.
Temperature status for reagent cooler and cuvette ring.
The temperature is outside the acceptable range.
Status of the sample area fan.
The fan is not running.
Display information on the fill status of each of the external bottles.
The color of the underlying buttons is displayed.
e
See Checking the external bottles on page A-93.
Display the maintenance actions list.
The color of the most urgent maintenance action is displayed.
e
See Maintenance on page A-107.
Status of the printer paper.
The printer is out of paper.
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