Leica APPLICATION SUITE V3.6.0, APPLICATION SUITE SYSTEM REQUIREMENTS V3.6.0 User Manual

Leica Application
Suite
System Requirements V3.6.0

Leica Application Suite

System Requirements

Includes computer specifications for other Leica Industry Division Software

Abstract

This document describes the microscopes, cameras and accessories that are supported by this version of LAS and defines the computer system requirements. You should read this document before installing your copy of this software.
Also included in this document are computer systems specifications for use with some other current Leica Industry Division software products. Please refer to the software product specifications for hardware supported by these products and not this document.
All reasonable steps have been taken to ensure that this publication is correct and complete, but should any user be in doubt about any detail, clarification may be sought from Leica Microsystems (Switzerland) Ltd, or their accredited representative. The information in this document is subject to change without notice and should not be construed as a commitment by Leica Microsystems (Switzerland) Ltd. Leica Microsystems (Switzerland) Ltd accepts no responsibility for any errors that may appear in this document.

Copyright © 2010 Leica Microsystems (Switzerland) Ltd

All rights reserved. The contents of this publication may not be reproduced in any form, or communicated to a third party without prior written permission of Leica Microsystems (Switzerland) Ltd.

Due to a policy of continuous development, we reserve the right to change specifications without notice.

Microsoft and MS-DOS are registered trademarks and Windows, the Windows logo, the Windows 2000 logo, the Windows XP logo, the Windows Vista logo and the Windows 7 logo are trademarks of Microsoft Corporation.

Date: April 2010

Issue: 19

Printed in UK

Table of Contents

1 Supported Microscopes, Cameras and Accessories 1
1.1 DM Microscopes .................................................................................................................................... 1
1.2 Stereo- and Macroscopes .................................................................................................................... 1
1.3 Cameras .................................................................................................................................................... 3
2 Computer System (PC) Specification 4
2.1 Software Products using this Specification ...................................................................................... 4
2.2 Processor ................................................................................................................................................. 4
2.3 Interfaces ................................................................................................................................................. 5
2.4 Operating System ................................................................................................................................... 5
2.5 Other Components .................................................................................................................................. 6
2.6 Notebook Recommendations ............................................................................................................... 6
3 LAS Power Mosaic Supported Components 7
3.1 Summary................................................................................................................................................... 7
3.2 PC Requirements .................................................................................................................................... 7
3.3 Microscopes supported ........................................................................................................................ 7
3.4 DFC Cameras Supported by Power Mosaic ...................................................................................... 7
3.5 Oasis-Blue Power Mosaic Kit .............................................................................................................. 8
3.6 Motorized Stage with Stepper Motors ............................................................................................... 8
3.7 Motorized Focus ..................................................................................................................................... 8
3.8 Encoder Option ........................................................................................................................................ 8
3.9 OASIS-4i Upgrade Kit ............................................................................................................................. 8
4 Factors that may reduce performance 10
1 Supported Microscopes, Cameras and Accessories

The following Leica microscopes and digital cameras are supported.

For other Leica Industry division software products please refer to the software product specifications for supported hardware and not this section.

For LAS Power Mosaic, please see Section 3 for supported equipment.

1.1 DM Microscopes

DM1000, 2000, 2500, 3000, 4000 B/M, 4500 B, 4500 P, 5000 B, 5500 B, 6000 B/M

DMI4000 B, 5000 M and 6000 B

DM500, DM750, DM750 P

FSC, FSM

CTR 4000-6500

Accessories for DM

Scanning stages

External light source EL6000

External filter wheels

TIRF module

Motorized duo documentation tube

Oasis-blue XYZ controller

1.2 Stereo- and Macroscopes

DVM2000

DVM3000 and DVM5000 (for firmware update only)

LED illumination LED3000 RL (ring light)

KL1500 LED Plus

LED illuminations LED5000 CXI (coax) and LED3000 NVI (near vertical)

Manual stereomicroscopes M50, M60 and M80

M205A, fully motorized stereomicroscope with 20.5:1 zoom range

M205FA, fully motorized fluorescence stereomicroscope with 20.5:1 zoom range

M165FC, manual fluorescence stereomicroscope with coded filter wheel, zoom and iris and 16.5:1 zoom range

M125, manual stereomicroscope with 12.5:1 zoom range

M-Series Long / Short Motor Focus Columns (10450258 and 10450050)

M-Series Long / Short Focus Columns (10450257 and 10450022)

FluoCombiTM attachment for fluorescence stereomicroscope with coded objective positions

Fluorescence objective revolver with coded objective positions

Coded Stereo Zooms M165C and M205C

LED illumination for VZ series (10450433 and 10450432)

LED illumination LED5000 MCI, LED5000 HDI and LED5000 RL-80/48

LAS System Requirements Page 1

USB interface for new manual focus drive coarse/fine

MZ-Series Long / Short Motor Focus Columns (10446041 and 10446176)

MZ 16A and MZ 16FA

Z 6 APOA and Z 16 APOA

IsoProTM motorized XY stage

Configuration of new footswitch

Configuration of UMC

MZ 16F, MZ 16

MZ 12.5

MZ10 F

MZ 9.5, MZ 7.5, MZ 6

MS 5

S6D

S8 APO

Z6 APO, Z16 APO

VZ85, VZ85 R, VZ85 C, VZ85 RC, VZ105, VZ105 C, VZ15 M

EZ4 D (NOT Windows Vista, Windows 7)

MacrofluoTM

Fluocombi / Revolving nosepiece

Support by USB for TL RCI and IsoProTM motorized XY stage

Support for USB / RS 232 serial adapter (Art. No. 11532295)

Transmitted light base for Stereo Microscopes TL RCITM

External light sources (Photonic CLS 150XD, CLS 150LS, Schott KL 2005 LCD, EL6000)

Oasis-blue XY controller (not Power Mosaic)

LAS System Requirements Page 2

1.3 Cameras

FireWire A (1394a)
FireWire B (1394b)
USB2
DFC280
DFC295
IC80 HD
DFC290
DFC290 HD
ICC50
DFC320
DFC310 FX
DFC300 FX
DFC345 FX
DFC340 FX
DFC360 FX
DFC350 FX
DFC400
DFC420
DFC425
DFC420 C
DFC425 C
DFC480
DFC495
DFC490
DVM2000
IC D
IC 3D
DFC500

Support for Windows XP, Windows Vista and Windows 7

This release supports the following Leica Digital Cameras on a Windows PC meeting the requirements detailed in Section 2:

NOT Supported

LAS does not support the following:

Matrox Meteor 2 or Leutron frame grabbers

Leica EC3

Leica DFC300, DFC300F, DFC350F

Leica DC100, DC150, DC160, DC180, DC200, DC250, DC300, DC300F, DC300FX, DC350F, DC350FX, DC480, DC500

LAS System Requirements Page 3
2 Computer System (PC) Specification

2.1 Software Products using this Specification

PC Specification for LAS software

This PC specification is targeted at Leica LAS software V3 or higher.

The minimum recommended PC specification is described below. Lower specifications may limit the performance and some features of LAS.

If using Windows Vista or Windows 7, a Windows experience index of 3.5 is required for simple acquisition and 4.5 or higher where multiple images are being processed.

Other Leica Software using this PC Specification

This PC specification also applies to the following software products with the restrictions mentioned:

Leica Servers - only with Windows XP and Vista 32-bit

Leica QWin - only with Windows XP and Vista 32-bit

Leica Materials Workstation - only with Windows XP and Vista 32-bit

Leica Stereo Explorer – only with Windows XP 32-bit

For all other software products, please refer to their individual specifications.

Leica LAS EZ software

LAS EZ does not require a Firewire interface. Minimum RAM of 1Gb combined with the other specification details as follows is acceptable. Not for use with Windows 7.

Leica DFC Twain software

The PC specification will depend on the requirements of the host software application and the suppliers own specifications for their software should be followed. The specification following is typical.

2.2 Processor

Intel Core 2 Duo with nominal CPU clock > 2GHz or Intel Pentium 4 32-bit (x86) Processor with nominal CPU clock of > 3.0GHz and including at least:

Leica IM – only with Windows XP 32-bit

2MbL2 cache 800 Mhz FSB

2GB or higher of system RAM is strongly recommended. Where application is limited to LAS Core and Windows XP, 1GB may be acceptable. For processing large image stacks, 4GB is useful. For use with DFC500 RAM must be less than 4GB.

Hard Drive: 80GB or higher, SATA 7200 rpm, 8MB cache, NTFS

Display and Graphics - 19 or greater size monitor, one or two monitors, set to screen resolution of 1920 x 1200 or 1600 x 1200 or 1280 1024

Graphics card minimum parameters:

128Mb Ram minimum for single screen or 256Mb Ram for dual screen 128-bit memory bus width 32 bits operation Support for Direct X Version 9c or Direct X Version 10 for Windows Vista or Windows 7. PCI Express

LAS System Requirements Page 4
It is vital that the manufacturer's latest graphics drivers are installed for LAS to display images and
Manufacturer
Model
Ports
Chipset
Leica Article Nr
1394b
I O I
FWB-PCI 02
2-port 1394b PCI-64
Texas Instruments
11 600 274
Zenkuman
PFW-85
2-port 1394b PCI-32
Texas Instruments
36 000 191
I O I
FWB-PCIE 1X21B
3-port 1394b PCI Express
Agere
12 730 210
1394a
LaCie
107355
3+1 port 1394a PCI-32
VIA
12730183
the user interface correctly and particularly for use with the LAS 3D Viewer and LAS MultiTime – Movie modules. Obtain these from the PC or graphics board manufacturer, not Microsoft Corp.

2.3 Interfaces

Leica DFC Cameras

Depending on the type of camera, a powered 1394a 6-pin or 1394b 9-pin FireWire OHCI port is required for use with Leica DFC cameras. As FireWire interface boards from some manufacturers have issues with non-Leica drivers, we recommend the use of the FireWire boards in the list below. Please note that you will also need the FireWire-b-b cable 12730186, if both camera and PC have a 1394b or FireWire-b connector.

The following cards are recommended:

The recommended minimum graphics adaptors are the Radeon X800, ATI Fire GL V7200or a recent NVidia Quadro graphics adaptor using the PCI Express bus or later models.

For Dual Screen operation, Windows 7 is recommended.

‘Integrated’ graphics cards may have reduced performance and are not recommended. Use of system or shared memory by the graphic card will impair performance. Some annotation and measurement overlays may not perform as expected.

All DFC cameras are supplied with a suitable FireWire cable.

For non-powered 4-pin (iLink) or 6-pin FireWire ports, the Laptop power kit 12730188 is needed.

Other Leica Cameras and EZ4 D

USB2 port is required for the EZ4 D, IC80 HD or ICC50.

Microscopes

USB2 interface ports are needed for the microscope and other external device control.

One or two serial interface ports for older generation microscopes.

Dongles

A USB port is required for each application in use at the same time:

Leica QWin and Materials Workstation – one combined

Stereo Explorer

Optional for Leica LAS dongle.

2.4 Operating System

LAS System Requirements Page 5

Supported versions of Windows are:

Windows 7 Professional or Ultimate, 32 or 64-bit

Windows Vista Business with service pack 2, 32 or 64-bit

Windows XP Professional Edition with service pack 2 or 3 is required. 32 bit only

Installation is as an Administrator. The User Account determines normal operation of LAS. Windows 4Gb RAM required for 64-bit unless DFC500 is used.

Multi-lingual support for Chinese, Japanese, and Korean require Windows 7 Ultimate or Vista Ultimate.

Note that a back-up device and a back-up strategy for images and databases is essential. The user must ensure that regular and reliable back up of important files is performed.

Windows Media Player must be installed or LAS will not grab images.

The Windows Hardware Detection Service must not be disabled or LAS will not start.

Windows 2000 is not supported.

2.5 Other Components

Keyboard and PC Mouse with wheel. The wheel should also act as a third button.

DVD-ROM compatible drive is required to install the LAS software.

400W PSU if all options are installed.

Full-height card slots for optional interface boards e.g. Oasis. The slot next to the Oasis board needs to be free or at least the next board must have low profile components.

Approximately 2 Gbytes of disk space for a full installation and an additional free space of 10Gbytes for efficient operation. Further space is required for data and image storage, which depends on the application and frequency of use. The free space must be checked regularly.

2.6 Notebook Recommendations

Notebooks and Laptops are normally designed for power saving rather than performance and so it is necessary to be careful in identifying suitable configurations. The true ‘desktop replacements’ using desktop components in a movable but very heavy box should be compared with the Desktop specification above.

Some Notebooks have automatic power saving features. Please be aware that LAS cannot control these and if they become activated, the performance of LAS will be very poor as will other programs.

Notebooks cannot be fitted with the Oasis XYZ control board so cannot be used with LAS Power Mosaic, LAS Cleanliness Expert, LAS QWin etc when a motorised stage or focus are to be used and are connected to an Oasis XYZ control board.

Otherwise the recommended processor is the Intel Core 2 Duo with speed greater than 2.0GHz. As Notebook configured processors use a slower memory bus and slower hard-drives, the overall performance is not as good as the Desktop equivalents.

The smaller screen size of Laptops may not be comfortable for use with high-resolution images. Make sure that the vertical resolution is at least 1k because many Notebooks have lower vertical resolution that limits the image size and panel display.

For Notebooks it is important to ensure that the display does not use an ‘integrated’ graphics controller. This will severely restrict live image performance. A dedicated and modern graphics controller is needed such as NVidia Quadro NVS 160M or later.
LAS System Requirements Page 6
3 LAS Power Mosaic Supported Components
12 730 181
LAS Power Mosaic
12 730 182
LAS Power Mosaic Plus
12 730 193
Oasis-blue XYZ kit for Power Mosaic
12 730 194
Upgrade kit for Oasis-4i XYZ for Power Mosaic
12 730 195
Oasis-blue Encoder kit for Power Mosaic
12 730 196
Märzhäuser Scanning Stage, 130x85mm, 2mm with Encoders
12 730 197
Märzhäuser Scanning Stage, 130x85mm, 2mm
12 730 198
Stage insert for one slide for SCAN 130 x 85
12 730 199
Stage insert for four slides for SCAN 130 x 85
10 450 219
Oasis-blue XY kit for Power Mosaic and IsoPro stage
10 450 218
IsoPro 6x4" motorized XY-stage V2

3.1 Summary

Note – LAS Power Mosaic and LAS Power Mosaic Plus do not support motorised focus with Stereomicroscopes.

3.2 PC Requirements

Due to the large image data handled by Power Mosaic, a very fast PC is required with at least 2Gb RAM. The hard-drive must be very fast and very large.

3.3 Microscopes supported

DM 5500 B, 6000 B/M

DM 4000 M - With addition of external focus motor

Generic microscopes with motor stage and motor focus

In combination with IsoProTM stage - Macroscopes (Z16APOA, Z6APOA, Z16APO, Z16APO) or any Leica current stereomicroscope.

3.4 DFC Cameras Supported by Power Mosaic

Please note ONLY the cameras mentioned are supported for Power Mosaic.

Turboscan and standard scan mode

DFC400, DFC300FX, DFC310FX, DFC350FX, DFC360FX - Require trigger cable included with Oasis­blue kit

Standard scan only – limited performance

DFC290, DFC295, DFC420, DFC425 - Do not use a trigger cable.

The Set Shading feature sometimes fails with these cameras, please contact Di.Support for advice.

LAS System Requirements Page 7

3.5 Oasis-Blue Power Mosaic Kit

10 450 219 Oasis-blue XY kit for Power Mosaic and IsoPro stage is required for use with the Leica IsoPro V2 stage.

12 730 193 Oasis-blue Controller board and Cable Kit for stepper stages includes:

XY Cable with Märzhäuser Round Connectors

Z axis and DFC Trigger Cable split cable

Smart Move or Joystick I/F Cable

MIC Box Pass-Thru (cable / ribbon cable / plate)

Focus adapter for Märzhäuser /DM6000/ Prior focus drive

3.6 Motorized Stage with Stepper Motors

The current Märzhäuser ‘Scan’ series for DM4-6K and for DMI can be used. For the upright stands, the following are recommended:

12 730 196 Märzhäuser Scanning Stage, 100x80mm, 2mm with Encoders

Requires 12 730 195 Oasis-blue Encoder kit for Power Mosaic

12 730 197 Märzhäuser Scanning Stage, 100x80mm, 2mm

At least one stage insert is also required:

12 730 198 Stage insert for one slide for SCAN 130 x 85

12 730 199 Stage insert for four slides for SCAN 130 x 85

The Smart Move controls the stage and focus - the focus knob on the microscope stand is disabled.

11 505 180 Smart Move for DM/DMI Series

10 450 218 IsoPro 6x4" motorized xy-stage V2 – note this stage is the new V2 stage that includes encoders.

3.7 Motorized Focus

DM5500-6000 use internal focus motor

Driven by Oasis using CTR MIC control cable with Z breakout.

DM4000 use external Märzhäuser focus drive

Included with 11 101 938 DM4000 M stand

3.8 Encoder Option

12 730 195 Oasis-blue Encoder kit for Power Mosaic

Used where best accuracy is required with high-mag objectives

Daughter board that fits on the Oasis-Blue board

Modified XY Cable for Encoder Inputs

Requires 12 730 196 Märzhäuser Scanning Stage, 100x80mm, 2mm with Encoders

3.9 OASIS-4i Upgrade Kit

Enables customers with previous generation Oasis boards to upgrade

Assumes that the microscopes and stage control is already functioning

LAS System Requirements Page 8

12 730 194 Kit includes

OASIS-DC1 daughter board

DFC Camera Trigger Cable

Does not include Smart Move kit.

Note – Oasis-4i will require a license code to be supplied, please contact DI.Support for this.

LAS System Requirements Page 9
4 Factors that may reduce performance

The following is a non-exclusive list of PC components that may degrade the performance of LAS. It is strongly recommended that the performance of LAS with a specific PC is tested to be acceptable before committing to its use.

LAS is for Windows-PC based computers only and is not available for Apple Mac computers.

Integrated graphics, AGP graphics, graphics that share CPU memory, using a mobile graphic device

Display on dual monitors with low performance graphics card

Use of displays with less than 1024 vertical resolution

Less than 400 Mbytes free RAM before LAS starts (700Mbyte is required for LAS MultiFocus and LAS MultiStep, 1Gb for LAS Power Mosaic). With Windows Vista or Windows 7 2Gb or more RAM is essential.

Other programs running at the same time as LAS

Using a Celeron processor or any processor other than the recommended Pentium or Core-duo range

Using Althlon processors

Using any power saving on the system

Using ‘sleep’ mode ‘hibernation’, auto power down modes

Windows versions other than those recommended

Personally constructed PCs or operating systems

An environment that is an upgrade of the original manufacture-installed operating system

Multi-boot environments

Shadow or Animated cursors and UI graphics

There is no expectation that the use of hyper threading, will give a performance gain

Saving images on a remote / server PC

LAS System Requirements Page 10
Leica Microsystems (Switzerland) Ltd. Telephone: +44 1223 411411 Stereo and Macroscope Systems Fax: +44 1223 210692 CH 9435 Heerbrugg Hotline: +44 1223 401824 Switzerland di.support@leica-microsystems.com www.microscopy-imaging.com
LAS System Requirements Page 11
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