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Safety Notices
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hazard. It calls attention to an
operating procedure, practice, or
the like that, if not correctly
performed or adhered to, could
result in damage to the product
or loss of important data. Do not
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and met.
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hazard. It calls attention to an
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or the like that, if not correctly
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Safety Summary
General Safety
Precautions
The following general safety precautions
must be observed during all phases of
operation of this instrument. Failure to
comply with these precautions or with
specific warnings elsewhere in this
manual violates safety standards of
design, manufacture, and intended use of
the instrument.
Agilent Technologies Inc. assumes no
liability for the customer's failure to
comply with these requirements.
Before operation, review the instrument
and manual for safety markings and
instructions. You must follow these to
ensure safe operation and to maintain the
instrument in safe condition.
General
This product is a Safety Class 1
instrument (provided with a protective
earth terminal). The protective features of
this product may be impaired if it is used
in a manner not specified in the operation
instructions.
Environment Conditions
This instrument is intended for indoor use
in an installation category II, pollution
degree 2 environment.
Refer to the specifications tables for the
ac mains voltage requirements and
ambient operating temperature range.
Before Applying Power
Verify that all safety precautions are
taken. The power cable inlet of the
instrument serves as a device to
disconnect from the mains in case of
hazard. The instrument must be
positioned so that the operator can easily
access the power cable inlet. When the
instrument is rack mounted the rack must
be provided with an easily accessible
mains switch.
Ground the Instrument
To minimize shock hazard, the instrument
chassis and cover must be connected to
an electrical protective earth ground. The
instrument must be connected to the ac
power mains through a grounded power
cable, with the ground wire firmly
connected to an electrical ground (safety
ground) at the power outlet. Any
interruption of the protective (grounding)
conductor or disconnection of the
protective earth terminal will cause a
potential shock hazard that could result in
personal injury.
Do Not Operate in an
Explosive Atmosphere
Do not operate the instrument in the
presence of flammable gases or fumes.
Do Not Remove the
Instrument Cover
Operating personnel must not remove
instrument covers. Component
replacement and internal adjustments
must be made only by qualified
personnel.
Instruments that appear damaged or
defective should be made inoperative and
secured against unintended operation
until they can be repaired by qualified
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for more information.
Environmental Information
ImportantInformation
Product:
Xcalibur or Gemini
Model
Configuration:
X-ray source: ENHANCE and/or ULTRA
Detector: Eos, Atlas or Titan
Electrical Ratings:
1/N AC 230 V 50/60 Hz 4200 Watts
This user manual applies to the Xcalibur systems manufactured in Poland by Agilent Technologies.
Before attempting to operate the system, PLEASE READ THE INSTRUCTIONS.
This product should only be used by persons legally permitted to do so.
If the equipment is used in a manner not specified in the User Manual, the protection provided by the
equipment may be impaired.
Important Health and Safety Notice
When returning components for service or repair it is essential that the item is shipped together with
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Contents
1. Health and Safety Information .............................................................................. 1
1.1 General ......................................................................................................................................................... 1
1.2.3. First Aid ............................................................................................................................................. 3
1.4 Safe Mechanical Practice ......................................................................................................................... 3
1.5 Moving Parts ............................................................................................................................................... 4
1.9 High Pressures ............................................................................................................................................ 5
1.10 Hazardous or Toxic Materials ................................................................................................................ 6
2.2 How To Use This Manual .......................................................................................................................... 7
2.3 System Overview ........................................................................................................................................ 7
3.2.2. Water Cooling .................................................................................................................................. 9
3.2.3. Helium Gas Supply For Ultra .......................................................................................................... 9
3.3 Performance Data ..................................................................................................................................... 10
3.3.2.1 General .......................................................................................................................................... 10
3.3.2.2 Eos CCD Detector ........................................................................................................................ 11
3.4 Electrical Data ........................................................................................................................................... 14
4.1 Overview of Xcalibur/Gemini ................................................................................................................. 15
4.2 KMW200CCD Chiller and KMW3000C Chiller...................................................................................... 18
4.3 Low Temperature Option ......................................................................................................................... 18
4.4 Safety Features ......................................................................................................................................... 18
5. Handling, Installation, Storage and Transit Information ................................. 20
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USER MANUAL Page vi
5.1 Reception and Handling .......................................................................................................................... 20
5.2 Installation and Setting to Work ............................................................................................................ 22
5.2.1. Preparation of Site and Services ................................................................................................ 22
5.2.2. Setting to Work .............................................................................................................................. 25
6.1 Controls and Indicators ........................................................................................................................... 26
6.2 System Start-Up ........................................................................................................................................ 28
11.1 X-ray Tube and CCD Detector .............................................................................................................. 53
11.2 Third Party Equipment ........................................................................................................................... 53
12. Additional Information ....................................................................................... 54
12.1 Third Party Information.......................................................................................................................... 54
Figure 12.2.2 System and Component Dimensions .......................................................................................... 56
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HEALTH AND SAFETY INFORMATION
WARNING
Indicates a potential hazard which may result in injury or death
CAUTION
Indicates a potential hazard which may result in damage to equipment
Protective conductor terminal
Earth (ground) terminal
CAUTION
Risk of electric shock
CAUTION
Refer to accompanying documents
WARNING
Radiation Hazard
CAUTION
Risk of finger squeeze between moving parts
CAUTION
Do not take risks. You have a responsibility to ensure the safe condition and safe
operation of equipment.
1. Health and Safety Information
1.1 General
In normal operation the system is designed to operate safely. All users of Xcalibur should be aware of
potential hazards which exist in and around equipment of this type and the ways of avoiding possible
injury and equipment damage which may result from inappropriate ways of working. A description of
such potential hazards and how to avoid them is given in this section.
This manual adopts the following convention:
Warning symbols on the equipment are:
See original manufacturers' manuals for further safety data on third party equipment supplied with the
system. A list of these is given in this manual.
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HEALTH AND SAFETY INFORMATION
WARNING
The equipment should only be operated and maintained by authorised operators of
the system. An authorised operator is a person who has undergone specialist
radiation training and has been trained in the use of Xcalibur by Agilent
Technologies personnel.
WARNING
All of the electrical equipment supplied as part of the system should be provided
with a protective ground. Do not remove protective grounds as this may give rise
to an electrical safety hazard. It is vitally important that the system is properly
grounded at all times.
Follow local and national electrical regulations and procedures.
Do not defeat interlocks, remove connectors, disconnect equipment, open safety
covers, dismantle or modify equipment unless you are qualified and authorised to
do so and you are fully conversant with its operation and potential hazards, or
have total assurance through your local electrical permit to work system that the
equipment has been made safe.
Ensure that the mains supply is fused at an appropriate rating, or fitted with a
circuit breaker, and that it can be isolated locally via a clearly labelled, clearly
visible and easily accessible isolating switch. Isolate the supply before carrying
out any maintenance work.
Never switch off the CCD detector’s power supply when the KMW200CCD is
operational. To switch off the CCD detector use the KMW200CCD’s front panel
power switch.
1.2 Electrical Safety
In normal use the user is protected from the dangers associated with the voltage, current and power
levels used by the equipment. Only personnel qualified to work with the voltages and currents used by
this equipment should attempt to disconnect, dismantle or modify the equipment.
1.2.1. Potential Electrical Hazards
The following list is not intended as a complete guide to all the electrical hazards on the system, but
serves to illustrate the range of potential hazards that exist:
electric shock
electric burn
fire of electrical origin
electric arcing
1.2.2. Recommended Precautions
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HEALTH AND SAFETY INFORMATION
WARNING
Do not touch any unshielded wires or connectors while mains power is supplied to
the system.
Do not allow water or any other foreign objects to come into contact with the
equipment’s electrical components.
WARNING
Do not attempt to administer first aid to someone who may have suffered electric
shock until the source of the shock has been isolated.
Mains voltages are present in the system. High voltages are used by the X-ray
tube and power supply. These can cause serious injury or death.
Only personnel qualified to work with high voltages and currents should perform
service or maintenance work on such equipment.
WARNING
Lifting points are provided for safe handling of components and safe handling
practice must be observed to comply with local regulations.
Check that lifting points are used only for the job intended.
The system itself and some components are heavy and require careful handling.
Use safe lifting procedures for heavy items to prevent possible strain injury.
1.2.3. First Aid
A course in first aid to include methods of artificial respiration is recommended for those whose work
involves equipment that may produce a high voltage.
1.3 Mechanical Handling Safety
1.4 Safe Mechanical Practice
In normal use personnel are not required to undertake mechanical work. However, servicing or repair
may necessitate access to any part of the system. Only personnel who have been trained by Agilent
Technologies to carry out service work on this equipment should attempt to dismantle, modify or
repair the equipment.
Water connections should be made and tested in accordance with any local and national safety
regulations.
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USER MANUAL Page 3
HEALTH AND SAFETY INFORMATION
WARNING
Injury could result if clothing or body parts become caught in moving
mechanisms.
Keep clothing, hands and body parts away from moving mechanisms.
WARNING
Between the moving parts of the goniometer there are a number of places at
which a potential finger squeeze or shearing hazard exists. The warning
triangle shown to the left is visible on the goniometer close to these places.
Keep hands away from the goniometer when parts are moving.
WARNING
1. Systems fitted with the low temperature option use liquid nitrogen and/or
liquid helium as a coolant. Liquid nitrogen and liquid helium are cryogenic
liquids and can cause cold burns. Wear gloves when handling cryogenic
liquids and use eye protection. Refer to the information supplied with the
equipment for more information.
2. During operation both the X-ray tube and the heat sink of the CCD power
supply become hot. In normal use they are located inside a cabinet and hot
parts are not accessible. During maintenance periods, however, it may be
necessary to open the cabinet so that adjustments can be made. Therefore
great care must be taken to avoid touching either the X-ray tube or the heat
sink of the CCD power supply when they are operating and for a period of 20
minutes after operation.
WARNING
This equipment contains an X-ray tube. Ensure that safe working practices
relating to radiation are employed. Follow any local, national or international rules
and guidelines.
Intentional or reckless misuse of the X-ray generator or its safety devices
including safety interlocks and cabinet shielding can result in serious injury or
even death.
1.5 Moving Parts
There are a number of moving parts in the system which are powered by electric motors.
1.6 Extreme Temperatures
1.7 X-ray Radiation
During operation, there is an acceptable level of X-ray radiation as based on the recommendations on
risk published by the International Commission of Radiological Protection (ICRP) and endorsed by the
Health Protection Agency (HPA) in the UK. For use in the UK, the Ionising Radiations‟ Regulations
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HEALTH AND SAFETY INFORMATION
WARNING
To prevent injury to personnel and possible damage to the equipment, please note
the following guidelines:
1. Only authorised personnel who have received appropriate instruction and are
aware of the laboratory rules that govern the use of this type of system should
operate the system.
2. Never dismount the beam stop when the system is operational.
3. Do not operate the system without the collimator, unless performing the beam
alignment procedure.
4. Use appropriate X-ray detection equipment to perform regular radiation
checks as per any laboratory rules
5. Use only genuine hardware X-ray tubes, X-ray generators, monochromators,
goniometer heads and collimators, as recommended by Agilent Technologies.
Use of other products may compromise the performance of the shielding and
safety system, and may invalidate your warranty.
WARNING
When handling and using X-ray tubes and the CCD detector, particular care
should be taken to avoid injury caused by possible implosion of the vacuum tube.
Wear eye protection.
WARNING
Know the law about high pressure gas cylinders and follow it. High pressure
cylinders are often used to store gases (typically at pressures up to 200 bar). Most
countries have laws about using them.
Chain cylinders to a fixed object or keep them in specially designed trolleys
Only use approved and tested high pressure fittings
1999 should be adhered to. For countries outside the UK the appropriate laws apply such as
registration and inspection.
Customers should be aware of their duty of safety to their employees and visitors.
1.8 Vacuum
1.9 High Pressures
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HEALTH AND SAFETY INFORMATION
WARNING
If Beryllium is exposed to fire, it may oxidise to highly toxic beryllium oxide
powder. Do not attempt to clear up the remains of any fire, but contact the
relevant local agency stating that there is an incident involving possible beryllium
or beryllium oxide contamination.
1.10 Hazardous or Toxic Materials
Beryllium and beryllium oxide are toxic materials. Follow appropriate handling, shipping, use, storage
and disposal procedures and regulations. Refer to BrushWellman Material Safety Data Sheet No. M10
for further information.
1.11 Maintenance
The manufacturer will not be held responsible for the safety, reliability or performance of the
equipment unless assembly operations, extensions, re-adjustments, modifications and repairs are
carried out only by persons authorised by the manufacturer. Interchangeable parts which are subject
to deterioration during operation must be serviced or interchanged during the intervals given.
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INTRODUCTION
2. Introduction
2.1 Scope
This manual applies to the Xcalibur system designed and manufactured by Agilent Technologies.
2.2 How To Use This Manual
This manual is aimed at operators and maintenance personnel of the Xcalibur system. Operators of
the system should be computer literate, familiar with X-ray diffraction techniques, have had training in
the use of the Xcalibur system by Agilent Technologies staff, and have had training about radiation
safety.
This manual is intended to provide operators with a practical guide to the system and its operation.
This is intended to familiarise the user with how the system works and provide a better understanding
of the system operation.
All personnel who are likely to operate the system or who are likely to come into contact with any of
the system components should read the HEALTH ANDSAFETY INFORMATION section of the manual.
This provides basic information aimed at highlighting the safety hazards associated with the
equipment.
More detailed information and instructions for component parts of the system are given in the third
party manuals supplied with the system, which are listed in this manual. These manuals should also
be read and understood before operating the system.
The purpose of this manual is to:
explain how to operate the equipment explain how to interface to the equipment list performance characteristics of the equipment describe how the equipment operates assist with simple fault finding and maintenance
2.3 System Overview
The Xcalibur series are single crystal diffractometers that use the property of X-ray diffraction to
determine the crystal structure of materials. They are intended for use with single crystals of chemical
substances (inorganic, organic or organo-metallic), mineralogical and biological samples. The Xcalibur
may also be used in the analysis of powder samples. Intended samples should have a maximum unit
cell dimension of 100 Ångstrom in any direction for small molecule diffractometers and 500 Ångstrom
for macromolecular systems.
The Xcalibur may be used with crystal conditioning devices. Specifically, low and high temperature
attachments and high pressure cells. Some minor modifications may be required by Agilent
Technologies to enable use of these devices.
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3. Specifications
Ambient temperature during operation
18 – 28 C
Stability of ambient temperature during
operation
1 C
Storage temperature
>10 C
<40 C
Relative humidity
20 - 80 % non – condensing
Location
Clean, dust free environment
>2m from air conditioning or heating units
Floor covering
Conductive or, if carpeted, covered with electrostatic
mats
Floor strength
Able to bear system weight of ~500 kg over an area of
0.64 m2
Total power requirements
230 V 10 % (or 208V for USA) for X-ray generators
and diffractometer
240, 220 or 110V (depending on region) for
temperature attachments and computer monitor.
63 A
All single phase supplies should be connected to the
same phase.
Number of outlets required
1 single-phase outlet (16 A) for diffractometer system
(comprising goniometer, interface, water chillers and
computer etc.)
1 single-phase outlet (32 A) for each X-ray generator
4 single-phase outlets (15 A total) for temperature
attachments and computer monitor.
3.1 Environmental Requirements
SPECIFICATIONS
3.2 Services
3.2.1. Electrical Supply
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USER MANUAL Page 8
Voltage fluctuation
< 10 % (with line voltage regulator fitted if
necessary)
Location of outlets
On wall behind system (except computer monitor
supply which should be near intended computer table
location)
Protection
Circuit breaker to be fitted to all electrical outlets
3.2.2. Water Cooling
Maximum flow rate
1.8 l/min
Pressure
0.5 – 3 bar gauge
Temperature stability
5 C
Temperature range
5 – 18 C
Composition
Refer to third party manual provided by X-ray tube
manufacturer.
Purity
99.99%
Regulator
low pressure regulator
Minimum pressure
0.5 bar gauge
Flow rate
30 - 40 cm3/min @ ATP
SPECIFICATIONS
3.2.3. Helium Gas Supply For Ultra
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3.3 Performance Data
Tube
Voltage (kV) setting
Current (mA) setting
Resulting power (kW)
Cu 2.2kW tube
50
40
2.0
Mo 3kW tube
55
40
2.2
Maximum radiation dose due to scattering
at outside surface of the enclosure (door
closed, shutter open)
<0.5 µSv/h (with Mo 3 kW tube operating at 2.2 kW)
Maximum radiation dose due to scattering
(door open, with shutter closed)
<0.5 µSv/h (with Mo 3 kW tube operating at 2.2 kW)
CCD chip
Kodak KAF4320-E
Scintillator material
Gadox
Peltier cooling
-40ºC (two stage cooler)
Temperature stability
± 0.05ºC(micro-processor PID)
Analogue-to-digital resolution
True 18 bit
System noise (so-called read noise)
<10 e- RMS
Dark current
< 0.05 e-/pix.s
Communication
Gigabit Ethernet
Pixel Sampling rate
5.6 MHz
Readout time (complete duty cycle including
chip readout, CDS, analogue-to-digital
conversion, transfer detector-PC, disk storage)
0.22s (4 x 4 binning)
0.46s (2 x 2 binning)
1.59s (1 x 1 binning)
3.3.1. X-ray Tube (Typical Operating Conditions)
SPECIFICATIONS
3.3.2. CCD Detector
3.3.2.1 General
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3.3.2.2 Eos CCD Detector
Active area
90 – 92 mm diagonal
Overall dimensions (L x W x H)
218 X 178 X 234 MM
Pixel size on scintillator
31 μm
Scintillator material
Gadox
Fibre optic reduction
1.3:1; low distortion reduction taper
Active area
135 mm diagonal
Overall dimensions (L x W x H)
243 X 178 X 234 MM
Weight
16 kg
Pixel size on scintillator
48 μm
Fibre optic reduction
2:1; low distortion reduction taper
Active area
165 mm diagonal
Overall dimensions (L x W x H)
262 X 192 X 241 MM
Weight
20 kg
Pixel size on scintillator
60 μm
Fibre optic reduction
2.5:1; low distortion reduction taper
Communication
Gigabit Ethernet
Drivers
WinXP
Typical host computer
Intel Core 2 Duo class PC
>2 GHz
1.0 Gb RAM
20” colour display
3.3.2.3 Atlas CCD Detector
SPECIFICATIONS
3.3.2.4 Titan CCD Detector
3.3.2.5 PC CCD Interface
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3.3.2.6. CCD Detector Maximum Theta and Resolution