This Service Manual has been developed for the exclusive use of service and repair professionals such as
Yanmar authorized distributors and Yanmar authorized dealers. It is written with these professionals in mind
and may not contain the necessary detail or safety statements that may be required for a non-professional to
perform the service or repair properly and / or safely. Please contact an authorized Yanmar repair or service
professional before working on your Yanmar product.
Disclaimers:
All information, illustrations and specifications in this manual are based on the latest information available at
the time of publishing. The illustrations used in this manual are intended as representative reference views
only. Moreover, because of our continuous product improvement policy, we may modify information,
illustrations, and / or specifications to explain and / or exemplify a product, service or maintenance
improvement. We reserve the right to make any change at any time.
Yanmar and are registered trademarks of Yanmar Co., Ltd. in Japan, the United States and / or
other countries.
All Rights Reserved:
No part of this publication may be reproduced or used in any form, by any means - graphic, electronic, or
mechanical, including photocopying, recording, taping, or information storage and retrieval systems - without
the written permission of Yanmar Marine International.
This manual gives specific instructions for the
proper repair of Yanmar 6LY3 series marine
engines.
Please follow the procedures carefully to ensure
quality service.
Yanmar recommends reading this Service Manual
completely before starting with repairs.
Along with standard tools, Yanmar recommends the
use of special tools necessary to perform repairs
correctly.
Yanmar products are continuously undergoing
improvement. This Service Manual has been
checked carefully in order to avoid errors. However,
Yanmar is not liable for any misrepresentations,
errors of description or omissions. Contact your
authorized Yanmar marine dealer or distributor for
any questions you have regarding this Service
This manual is a living document. Periodic manual
revisions are published to document product
improvements and changes. This practice ensures
the manual has the most current information.
As manual revisions become necessary, individual
pages are prepared and sent to those who need
the information. If a page or number of pages
should be replaced, the replacement information is
sent along with a revised Revision Control Table.
Discard the older, obsolete information.
Revision Control Table
Revision Date
Revision Number
Aug. 2007
Rev. 0
New Page Numbers
Involved
ALLInitial ReleaseYMI
At times, the revision involves inserting additional
pages in one or more sections. Replace the
Revision Control Table and insert the new pages.
This method of revision control represents the most
cost-effective solution to providing current, updated
information as needed.
Yanmar is concerned for your safety and the
condition of your marine engine. Safety statements
are one of the primary ways to call your attention to
the potential hazards associated with Yanmar
marine engines. Follow the precautions listed
throughout the manual before operation, during
operation and during periodic maintenance
procedures for your safety, the safety of others and
to protect the performance of your marine engine.
Keep the decals from becoming dirty or torn and
replace them if they are lost or damaged. Also, if a
part needs to be replaced that has a decal attached
to it, make sure to order the new part and decal at
the same time.
This safety alert symbol appears
with most safety statements. It
means attention, become alert,
A
your safety is involved! Please read
and abide by the message that
follows the safety alert symbol.
Indicates a hazardous situation which, if not
avoided, will result in death or serious injury.
Indicates a hazardous situation which, if not
avoided, could result in death or serious injury.
Indicates a hazardous situation which, if not
avoided, could result in minor or moderate
injury.
Indicates a situation which can cause damage to
the engine, personal property and / or the
environment or cause the equipment to operate
improperly.
There is no substitute for common sense and
careful practices. Improper practices or
carelessness can cause burns, cuts, mutilation,
asphyxiation, other bodily injury or death. This
information contains general safety precautions
and guidelines that must be followed to reduce risk
to personal safety. Special safety precautions are
listed in specific procedures. Read and understand
all of the safety precautions before operating,
performing repairs or maintenance.
The safety messages that follow have DANGER
level hazards. These safety messages describe
a hazardous situation which, if not avoided, will
result in death or serious injury.
NEVER permit anyone to install or
operate the engine without proper
training.
• Read and understand this Service Manual before
operating or servicing the engine to ensure that
safe operating practices and maintenance
procedures are followed.
The safety messages that follow have
WARNING level hazards. These safety
messages describe a hazardous situation
which, if not avoided, could result in death or
serious injury.
Explosion Hazard
While the engine is running or the
battery is charging, hydrogen gas is
being produced and can be easily
ignited. Keep the area around the
battery well-ventilated and keep sparks,
open flame and any other form of ignition out of the
area.
ALWAYS turn off the battery switch (if equipped) or
disconnect the negative (-) battery cable before
servicing the equipment.
Fire and Explosion Hazard
Diesel fuel is flammable and explosive
under certain conditions.
• Safety signs and decals are additional reminders
for safe operating and maintenance techniques.
• See your authorized Yanmar marine dealer or
distributor for additional training.
Crush Hazard
NEVER stand under a hoisted
engine. If the hoist mechanism fails,
the engine will fall on you.
ALWAYS secure the engine solidly to prevent the
engine from falling during maintenance.
NEVER use a shop rag to catch the fuel.
Wipe up all spills immediately.
NEVER refuel with the engine running.
Store any containers containing fuel in a
well-ventilated area, away from any combustibles or
sources of ignition.
Have appropriate safety equipment
available. Have all fire extinguishers
checked periodically for proper
operation and / or readiness.
ALWAYS read and follow safety-related precautions
found on containers of hazardous substances like
parts cleaners, primers, sealants and sealant
removers.
Undersized wiring systems can cause an electrical
fire.
Entanglement Hazard
NEVER leave the key in the key switch
when servicing the engine. Attach a
“Do Not Operate” tag near the key
switch while performing maintenance
on the equipment.
ALWAYS stop the engine before beginning service.
If the engine must be serviced while it is operating,
remove all jewelry, tie back long hair and keep
hands, other body parts and clothing away from
moving / rotating parts.
SAFETY
Piercing Hazard
Avoid skin contact with high-pressure
diesel fuel spray caused by a fuel
system leak such as a broken fuel
injection line. High-pressure fuel can
penetrate your skin and result in
serious injury. If you are exposed to high-pressure
fuel spray, obtain prompt medical treatment.
NEVER check for a fuel leak with your hands.
ALWAYS use a piece of wood or cardboard. Have
your authorized Yanmar marine dealer or distributor
repair the damage.
Flying Object Hazard
ALWAYS wear eye protection when servicing the
engine or when using compressed air or
high-pressure water. Dust, flying debris,
compressed air, pressurized water or steam may
injure your eyes.
Coolant Hazard
Wear eye protection and rubber gloves
when handling Long Life Coolant (LLC).
If contact with the eyes or skin should
occur, flush eyes and wash immediately with clean
water.
NEVER wear jewelry, unbuttoned
cuffs, ties or loose-fitting clothing and
ALWAYS tie long hair back when
working near moving / rotating parts
such as the flywheel or PTO shaft. Keep hands,
feet and tools away from all moving parts.
The propeller may rotate during towing or if the
engine is running at idle speed. NEVER service the
engine while being towed or when the engine is
running.
If the vessel has more than one engine, NEVER
service an engine if either of the engines is running.
In multi-engine configurations the propeller for an
engine that is shut down may rotate if any of the
other engines are running.
Safety Precautions
ALWAYS keep the electrical connectors and
terminals clean. Check the electrical harnesses for
cracks, abrasions and damaged or corroded
connectors.
NEVER turn off the battery switch (if equipped) or
short the battery cables during operation. Damage
to the electrical system will result.
Exhaust Hazard
All internal combustion engines create
carbon monoxide gas during operation
and special precautions are required to
avoid carbon monoxide poisoning.
• NEVER block windows, vents or other means of
ventilation if the engine is operating in an
enclosed area.
• ALWAYS ensure that all connections are
tightened to specifications after repair is made to
the exhaust system.
Electrical Hazard
Make welding repairs safely.
• ALWAYS turn off the battery switch (if
equipped) or disconnect the negative
(-) battery cable and the leads to the
alternator when welding on the
equipment.
• Remove the multi-pin connector to the engine
control unit. Connect the weld clamp to the
component to be welded and as close as possible
to the welding point.
• NEVER connect the weld clamp to the engine or
in a manner which would allow current to pass
through a mounting bracket.
• When welding is complete, reconnect the leads to
the alternator and engine control unit prior to
reconnecting the batteries.
Burn Hazard
Some of the engine surfaces become
very hot during operation and shortly
after shutdown.
• Keep hands and other body parts away from hot
engine surfaces.
• Handle hot components with heat-resistant
gloves.
The engine lifting eyes are engineered to lift the
weight of the marine engine only. ALWAYS use the
engine lifting eyes when lifting the engine.
Lifting Hazard
Additional equipment is necessary to lift the marine
engine and marine gear together. ALWAYS use
lifting equipment with sufficient capacity to lift the
marine engine.
If transport is needed for engine repair, have a
helper assist in attaching it to a hoist and loading it
onto a truck.
Alcohol and Drug Hazard
NEVER operate the engine while
under the influence of alcohol, drugs or
when ill.
The safety messages that follow have CAUTION
level hazards. These safety messages describe
a hazardous situation which, if not avoided,
could result in minor or moderate injury.
ALWAYS wear eye protection when
servicing the engine or when using
compressed air or high-pressure water.
Dust, flying debris, compressed air,
pressurized water or steam may injure
your eyes.
Poor Lighting Hazard
Ensure that the work area is adequately
illuminated. ALWAYS install wire cages on portable
safety lamps.
Too l Haza rd
ALWAYS use tools appropriate for the task at hand
and use the correct size tool for loosening or
tightening machine parts.
Exposure Hazard
ALWAYS wear personal protective
equipment including appropriate
clothing, gloves, work shoes, eye and
hearing protection as required by the
task at hand.
Too l Haza rd
ALWAYS remove any tools or shop rags used
during maintenance from the area before operation.
The safety messages that follow have NOTICE
level hazards.
Safety Precautions
NEVER dispose of hazardous materials by
dumping them into a sewer, on the ground or into
groundwater or waterways.
Any part which is found defective as a result of
inspection or any part whose measured value does
not satisfy the standard or limit must be replaced.
ALWAYS tighten components to the specified
torque. Loose parts can cause equipment damage
or cause it to operate improperly.
Only use replacement parts specified. Other
replacement parts may affect warranty coverage.
NEVER attempt to modify the engine design or
safety features such as defeating the engine speed
limit control or the diesel fuel injection quantity
control.
NEVER attempt to adjust the low or high idle speed
limit bolt. This may impair the safety and
performance of the engine and shorten its life.
Modifications of this type may void the warranty. If
adjustment is ever required, contact your
authorized Yanmar marine dealer or distributor.
If any indicator illuminates during engine operation,
stop the engine immediately. Determine the cause
and repair the problem before continuing to operate
the engine.
Make sure the engine is installed on a level surface.
If a Yanmar Marine engine is installed at an angle
that exceeds the specifications stated in the
Yanmar Marine Installation Manuals, engine oil may
enter the combustion chamber causing excessive
engine speed, white exhaust smoke and serious
engine damage. This applies to engines that run
continuously or those that run for short periods of
time.
Modifications may impair the engine’s safety and
performance characteristics and shorten the
engine’s life. Any alterations to this engine may void
its warranty. Be sure to use Yanmar genuine
replacement parts.
Follow the guidelines of the EPA or
other governmental agencies for the
proper disposal of hazardous materials
such as engine oil, diesel fuel and
engine coolant. Consult the local
authorities or reclamation facility.
NOTICE: Use the correct fuel type to maintain
engine performance and reduce engine wear and
ensure compliance with emission regulations.
Fuel Selection
Diesel fuel should comply with the following
specifications:
• The fuel specifications need to comply with
national and international standards.
• ASTM D975 No. 1-D
No. 2-D for USA
• EN590: 96 for EU
• ISO 8217 DMX International
• BS 2869-A1 or A2 for UK
• JIS K2204-2 for JAPAN
Additional Fuel Requirements
• Fuel cetane number should equal 45 or higher.
• Sulfur content should not exceed 0.5% by
volume. (Preferably it should be below 0.05%.)
• Water and sediment in the diesel fuel should not
exceed 0.05% by volume.
• Ash should not exceed 0.01% by mass.
• Carbon residue content of the diesel fuel should
not exceed 0.35% by volume. (Preferably it
should be below 0.1%.)
• Total aromatic content of the diesel fuel should
not exceed 35% by volume. (Preferably it should
be below 30% and aromatic polycyclic aromatic
hydrocarbons (PAH*) content of the diesel fuel
should be below 10%.)
NOTICE: Mixing winter and summer fuel, using
Kerosene, residual fuel or Biocide produces poor
fuel quality and will result in reduced engine
performance and excessive wear of internal
components.
• Water and dust in the diesel fuel can cause
operation failure. Use containers which are clean
inside to store diesel fuel. Store the containers
away from rain and dirt.
• Allow fuel to settle for several hours before
pumping from container.
• Before refilling fuel, let the fuel container rest for
several hours so that water and dust in the fuel
are deposited on the bottom. Use only clean fuel.
Use the clear filtered fuel from the upper middle
section of the container only (Figure 3-3), leaving
any contaminated fuel at the bottom.
Figure 3-3
0006257
Figure 3-3
Diesel Fuel Lines
Install the fuel supply line between the fuel tank and
the fuel injection pump. Install a drain cock at the
bottom of the fuel tank to remove water and dust.
Install a fuel / water separator and a fuel filter in the
middle of the fuel supply line.
Figure 3-4
(1)
(10)
(8)
(9)
Figure 3-4
1 – Diesel Fuel Strainer
2 – Diesel Fuel Return Pipe
3 – Diesel Fuel Tank
4 – Drain Cock
5 – Diesel Fuel Shutoff Valve
6 – Approximately 500 mm (20 in.)
7 – Fuel / Water Separator
8 – Diesel Fuel Priming Pump
9 – Less than 500 mm (20 in.)
NOTICE: Use the correct engine oil to maintain
engine performance and reduce engine wear.
Selection of Engine Oil
Use an engine oil that meets or exceeds the
following classifications:
• API Service Category - CD or higher
• TBN Valve - 9 or more
• SAE viscosity - 15W40
If the engine is operated at temperatures below
those shown in Figure 3-5, consult your Yanmar
Marine dealer for special lubricants and starting
aids.
Figure 3-5
Selection of viscosity (SAE Service grade)
10W
20W
10W-30
15W-40
#20
#30
#40
-20-1001020304050
Atmospheric temperature (°C)
0006258
The following oils should not be used for 6LY3-ETP,
STP or UTP engines:
• API: CG-4, CH-4
• ACEA: E-1, E-2, B
• JASO: DH-2, DL-1
Additional Technical Engine Oil
Requirements
The engine oil must be changed when the Total
Base Number (TBN) has been reduced to 2.0. TBN
(mgKOH / g) test method; JIS K-2501-5.2-2 (HCI),
ASTM D4739 (HCI).
Handling Engine Oil
1. Check that the engine oil, oil storage container
and filling equipment are free of sediment and
water.
2. NEVER mix engine oils of different types.
3. Extract any residual oil from the engine or
marine gear before servicing for the first time.
Always use fresh new oil.
4. Engine oil degrades over time, even when the
engine is not in use. Change oil at specified
times regardless of engine usage.
MARINE GEAR OIL
Refer to the Operation Manual for marine gear oil
specifications.
Mix clean deionized soft water with Long Life
Coolant (LLC) in order to prevent rust buildup and
freezing. NOTICE: NEVER use water only.
Freezing water will cause serious damage to the
engine.
LLC must conform to the following specifications:
• JIS K-2234
• SAE J814C, J1941, J1034, J2036
• ASTM D3306
• ASTM D4985
Yanmar recommends using genuine Yanmar
coolant / antifreeze. Contact your authorized
Yanmar dealer or distributor.
Recommended Engine Coolants:
• TEXACO LONG LIFE COOLANT ANTIFREEZE,
both standard and pre-mixed. Product code
79947 and 7998.
Handling of Coolant
1. Replace the coolant periodically, according to
the maintenance schedule in the Operation Manual.
2. Remove the scale from the coolant system
periodically, according to the instructions for
your engine.
NOTICE: Excessive mixture of LLC lowers the
cooling efficiency of the engine. Use the mixing
ratios specified by the LLC manufacturer for the
temperature range in which you will be operating.
• HAVOLINE EXTENDED LIFE ANTIFREEZE /
COOLANT. Product code 7994.
NOTICE:
• Always be sure to add LLC to soft water. It is
particularly important to add LLC during cold
weather. Without LLC, coolant performance will
decrease due to scale and rust in the coolant
system.
• Mix the proper amount of coolant concentrate
specified by the LLC manufacturer for the
ambient temperature in which you will be
operating. LLC concentration should be between
30% and 60%.
• Mixing different types of LLC is harmful because
it causes sludge buildup.
6LY3 series engines are applicable with Marine Compression Ignition Engines Regulation of the EPA
(40 CFR Part 94) in the U.S. RCD Regulation and BSO Regulation in Europe and other regulations are
applied to this engine.
Engine Identification
With the regulations on exhaust gas emission worldwide, it has become necessary to identify engines in a
manner that determines which regulations they comply with.
EPA Emission Labels and Location
Figure 3-8
MARINE ENGINE EMISSION CONTROL INFORMATION
THIS ENGINE COMPLIES TO U.S. EPA REGULATIONS
40 CFR PART 94 WHICH APPLY TO MARINE ENGINES
MODEL YEAR : 2006MODEL: 6LY3-ETP, STP, UTP
DISPLACEMENT PER CYLINDER : 0.969 LITERS
ENGINE FAMILY : 6YDXM5.81D6H
STANDARDS THC+NOx : 7.2g/kWh CO : 5.0g/kWh PM : 0.30g/kWh
REFER TO OWNER'S MANUAL FOR MAINTENANCE
SPECIFICATIONS AND ADJUSTMENTS.
APPLICATION : RECREATIONAL
THIS ENGINE IS CATEGORIZED AS A RECREATIONAL
MARINE ENGINE UNDER 40 CFR PART 94. INSTALLATION
OF THIS ENGINE IN ANY NONRECREATIONAL VESSEL IS A
VIOLATION OF FEDERAL LAW SUBJECT TO CIVIL PENALTY.
EPA Engine Family Name as Assigned by EPA Identifying Engine Family Group
Figure 3-9
6 YDX M5.81D 6H
Method of air aspiration
Number of cylinders
Combustion chamber design
Displacement (liter)
Marine engine
Yanmar
2006 Model Year
Figure 3-9
0006260
EPA Exhaust Gas Emission Standard
Engine PowerCategoryTierModel YearNMHC + NOxCOPM
37 kW (50.3 hp) and
Above
0.9-1.2 L / cylinderTier 22006
7.2 g / kWh
(0.186 oz / hph)
5.0 g / kWh
(0.129 oz / hph)
0.3 g / kWh
(0.007 oz / hph)
NOTICE: The transit smoke (ACC / LUG / PEAK) is not applicable. The EPA recommended fuel is used. As
for model year, the year which a regulation is applicable to for recreational use is shown.
EPA Guarantee Conditions for
Emission Standard
In addition to making sure that these conditions are
met, check for any deterioration that may occur
before the required periodic maintenance times.
UsePleasure Use
TypeVertical water-cooled, 4-cycle diesel engine
AspirationTurbocharger with Aftercooler
Combustion SystemDirect injection
Number of Cylinders6
Firing Order1-4-2-6-3-5
Bore x Stroke 105.9 × 110 mm (4.17 × 4.33 in.)
Displacement 5.813 L (6.14 qt)
Output at Crankshaft
Continuous Rating Output
Maximum Output
High Idling (Note 3)3500 ± 25 rpm
Low Idling (Note 3)700 ± 25 rpm
Installation Flexible mounting
Direction of Rotation Crankshaft Counterclockwise viewed from stern
Coolant System Closed coolant system with heat exchanger
Lubrication System Complete enclosed forced lubrication
Coolant Capacity
Starting System
Turbocharger
Engine Dimension
Engine Dry Mass (Without Marine Gear) 640 kg (1410.96 lb)
Recommended Battery Capacity 12V-150Ah or more
Engine Speed (3198 rpm)
(Notes 1 and 2)
Output at Crankshaft
Engine Speed (3300 rpm)
(Notes 1 and 2)
Rake Angle 0°
Total (Note 4) 18.8 L (19.9 qt)
Effective (Note 5) 8.0 L (8.5 qt)
Type Electric
Starting Motor DC 12V - 3 kW
AC Generator 12V - 80A
Model RHC7W (IHI made)
Type Water cooled
Overall Length 1300.4 mm (51.2 in.)
Overall Width 801.3 mm (31.5 in.)
Overall Height 776.6 mm (30.6 in.)
436 hp Metric
321 kW
480 hp Metric
353 kW
40°C (104°F) at fuel inlet temperature
Coolant recovery tank: 1.5 L (30 qt)
3198 rpm
401 hp Metric
295 kW
3300 rpm
441 hp Metric
324 kW
Engine: 28 L (30 qt)
345 hp Metric
254 kW
379 hp Metric
279 kW
Notes:
1. Rating condition: ISO 8665. Temperature of fuel: 40°C (104°F) at the fuel pump inlet.
2. 1 hp (metric horsepower) = 0.7355 kW
3. Fuel condition: Density at 15°C (59°F) = 0.860 g/cm
4. Fuel temperature at the inlet of the fuel injection pump.
5. The “Total Engine Oil Capacity” includes the oil in the oil pan, channels, coolers and filter.
6. The “Effective Engine Oil Capacity” indicates the difference in maximum scale of the dipstick and
Aampere
ACalternating current
ACEAAssociation des Constructeurs
Européens d’Automobilies
Ahampere-hour
APIAmerican Petroleum Institute
ARBAir Resources Board
ATDCafter top dead center
BDCbottom dead center
BTDCbefore top dead center
°Cdegree Celsius
CARBCalifornia Air Resources Board
CCAcold cranking amp
cfmcubic feet per minute
cmcentimeter
3
cm
3
cm
/min.cubic centimeter per minute
cu in.cubic inch
Ddiameter
DCdirect current
DIdirect
DVAdirect volt adapter
EPAEnvironmental Protection Agency
ESGelectronic speed governor
°Fdegree Fahrenheit
fl ozfluid ounce (U.S.)
fl fluid ounce (U.S.) per minute
ftfoot
ft-lbfoot pound*
ft-lbf/min.foot pound force per minute
ggram
galgallon (U.S.)
gal/hrgallon (U.S.) per hour
gal/min.gallon (U.S.) per minute
GLgear lubricant
hphorsepower (metric)
hrhour
IDinside diameter
IDidentification
IDIindirect injection
in.inch
inAqinches Aqueous (water)
in. Hginches Mercury
in.-lbinch pound**
Jjoule
JASOJapanese Automobile Standards
Kkelvin
kgkilogram
cubic centimeter
Organization
kgf/cm
kgf·mkilogram force per meter
kmkilometers
kPakilopascal
kWkilowatt
Lliter
L/hrliter per hour
lbpound
lbfpound-force
lb-ftpound foot (Tightening Torque)
lb-inpound inch (Tightening Torque)
mmeter
mLmilliliter
mmmillimeter
mmAqmillimeter Aqueous (water)
MPamegapascal
mVmillivolt
Nnewton
N
No.number
O.D.outside diameter
ozounce
Papascal
PShorsepower (metric)
psipound per square inch
qtquart (U.S.)
Rradius
rpmrevolutions per minute
SAESociety of Automotive Engineers
sec.second
tshort ton 2000 lb
TBNtotal base number
TDCtop dead center
Vvolt
VACvolt alternating current
VDCvolt direct current
Wwatt
2
kilogram force per square
centimeter
·mnewton meter
Symbols
°degree
+plus
-minus
±plus or minus
Ωohm
μmicro
%percent
* Work torque such as engine torque
** Work torque such as starter motor torque