For Research Use or Manufacturing of Cell, Gene, or Tissue- Based
Products.
Page 2
Life Technologies Holdings Pte Ltd | Block 33 | Marsiling Industrial Estate Road 3 | #07-06, Singapore 739256
For descriptions of symbols on product labels or product documents, go to thermofisher.com/symbols-definition.
The information in this guide is subject to change without notice.
DISCLAIMER: TO THE EXTENT ALLOWED BY LAW, THERMO FISHER SCIENTIFIC INC. AND/OR ITS AFFILIATE(S) WILL NOT BE
LIABLE FOR SPECIAL, INCIDENTAL, INDIRECT, PUNITIVE, MULTIPLE, OR CONSEQUENTIAL DAMAGES IN CONNECTION WITH OR
ARISING FROM THIS DOCUMENT, INCLUDING YOUR USE OF IT.
The CTS™ Rotea™ Counterflow Centrifugation System is for use in further manufacturing applications only and not for fill and finish
applications. Drug manufacturers are responsible for ensuring the purity, potency, safety and identity of finished drug products and for
obtaining the appropriate regulatory approvals.
Revision history: Pub. No. MAN0018908
RevisionDateDescription
B.002 December 2020Minor change to CTS™ Rotea™ Counterflow Centrifugation System
A.020 October 2020New document. User guide for new workflow.
specific disclaimer statement.
Important Licensing Information: This product may be covered by one or more Limited Use Label Licenses. By use of this product,
you accept the terms and conditions of all applicable Limited Use Label Licenses.
TRADEMARKS: All trademarks are the property of Thermo Fisher Scientific and its subsidiaries unless otherwise specified.
CTS™ Rotea™ Counterflow Centrifugation System User Guide
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1
IMPORTANT! Before using this product, read and understand the information in the “Safety” appendix
in this document.
Product description
The CTS™ Rotea™ Counterflow Centrifugation System is an automated, closed-flow benchtop
instrument that can perform a wide variety of cell processing steps across dierent cell types.
The CTS™ Rotea™ Single-Use Kit is specifically designed for a range of cell processing applications
such as separation, isolation, buer exchange, wash and concentrate. Each kit has 8 input/output
sterile weldable tubes, counterflow centrifuge and Carrier Frame for unparalleled setup flexibility.
The CTS™ Rotea™ Software is user-programmable and allows users to save, create, and modify
protocols depending on the application. The system's open design and integrated camera allows users
to visualize cells in real-time to more easily optimize protocols.
Product information
Features
CTS™ Rotea™ Counterflow Centrifugation System easily fits into existing workflows, from research to
commercial manufacturing.
•
Integrated camera provides real-time sample visualization
•
Patented technology that can process up to 20 L of starting volume to as little as 5 mL of output
volume
•
Gentle fluidized bed results in unmatched cell recovery and viability
•
Seamlessly transition from process development to GMP manufacturing on the same system.
Contents
Table 1 CTS™ Rotea™ Counterflow Centrifugation System (Cat. No. A44769)
Contents
CTS™ Rotea™ Centrifuge1 ea
CTS™ Rotea™ Single-Use KitAvailable separately
Protocol Development Application1 ea
Amount
Dell™ 2-in-1 laptop for operation/programming1 ea
CTS™ Rotea™ Counterflow Centrifugation System User Guide
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2
1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
Chapter 1 Product information
1
System overview
System overview
Instrument description
Figure 1 Instrument – Front View
Instrument Door
1
Pinch Valves (J & K)
2
Kit Location Button
3
2D Barcode Reader
4
CFC Chamber Detector
5
CFC Chamber Carrier
6
Camera
7
Moisture Sensor
8
Pushbutton Controls
9
8
Optical Density Sensor & Pressure Sensor (P1)
10
Peristaltic Pump
11
Pump Clamp Arm
12
Pinch Valve (H)
13
Kit Location Button & Pressure Sensor (P2)
14
Door Latch
15
Pinch Valves (A, B, C, D, E, F, & G)
16
Bubble Sensors
17
Hanger Posts
18
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8
7
6
5111
1
432
Chapter 1 Product information
System overview
1
Figure 2 Instrument – Rear View
Power Switch
1
Mains Connector
2
CAN bus (2 o)
3
Ethernet (RJ-45)
4
USB-C
5
Bag Hooks
6
Hanger Post
7
Hanger Post Adjustment
8
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1
Chapter 1
System overview
Product information
Instrument dimensions
Working space
The Rotea™ instrument is designed for bench top use and requires a working space of approximately
Height: 30” (76 cm), Width: 25” (63.5 cm), Depth: 20” (50.8 cm).
Note: The 2‑in‑1 laptop is connected via a USB-C cable and hence can be located in a range of
positions. The width dimension of 25” assumes that the laptop is located on the bench beside the
instrument.
Instrument weight
The Rotea™ instrument weighs 44 lbs (20 kg) with hanger posts installed.
10
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Instrument properties
Chapter 1 Product information
System overview
1
Category
Electrical
Sound level
Environmental ranges
PropertyValue
Supply voltage100–240 V AC ±10%, 50/60 Hz
PhasesSingle
Maximum Rated Input Current5 A
Fuses2 x 5 A
Maximum sound level70 dBA (measured 1 m from instrument)
Typical sound level65 dBA (measured 1 m from instrument)
Ambient temperature15℃ to 30℃
Transport temperature0℃ to 45℃
Storage temperature15℃ to 30℃
Maximum relative humidity80% (non-condensing)
Operating limits
Altitude (max.)2000 m
Indoor use only—
Not intended for use in a wet
location
Intended for use in Pollution
degree 2 environment
Centrifuge speed0 to 3000 × g (7000 rpm)
Flow rateStandard: 5 to 110 mL/min (LS19)
Hi-Flow: 30 to 160 mL/min (LS16 tube)
System pressure100 kPa
Liquid temperature4℃ to 38℃
Fluid density1.0 to 1.1 g/mL
Minimum working volumeApprox. 50 mL
Note: Smaller volumes of input material can be
diluted to enable processing
—
—
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Chapter 1 Product information
1
System overview
(continued)
Category
CAN bus connection
PropertyValue
Minimum concentrate recovery
volume
Centrifuge chamber volume10 mL chamber containing up to 4 × 109 cells (cell
type and operating parameters dependent).
Note: Centrifuge chamber can be filled multiple
times to process larger batches.
Maximum bag weight per pole4.4 lb (2 kg)
Output concentrationUp to 300 × 106 cells/mL (cell type and operating
parameters dependent)
PurposeFor connection and control of external devices
ConnectorTE Connectivity T4111402051-000 M12 Plug
ConnectionsPin 1 - VCC CAN - +5V out
Pin 2 - CAN-H - Dominant High
Pin 3 - CAN-L - Dominant Low
5 mL (subject to protocol optimization)
Pin 4 - GND - Ground
Pin 5 - GND - Shield, optional
12
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Push button controls
Once a protocol has been loaded and confirmed, the Rotea™ instrument can be operated almost
entirely from the push buttons on the front of the instrument.
Chapter 1 Product information
System overview
1
Figure 3 Instrument push button controls
Light
Push button
operation
SolidPush button to stop
FlashingInstrument has
STOPSTART/PAUSEADVANCEDOOR UNLOCK
the instrument and
the current protocol
stopped due to
an alarm condition.
User intervention is
required.
Push button to start
the Protocol, pause
the current step in
the protocol or re-
start a paused step
Instrument is in a
paused condition.
Pressing allows
the instrument to
continue the current
step of the protocol.
Push button to
advance to the next
step in the protocol
Button can be
pushed, advancing
to the next step of
the protocol
Push button to
unlock the door
N/A
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3
5
1
2
4
7
8
9
10
11
12
Chapter 1 Product information
1
System overview
CTS™ Rotea™ Single-Use Kit schematic
The CTS™ Rotea™ Single-Use Kit enables users to configure kits to suit dierent protocols by adding
input and output vessels. Unused fluid lines are simply left sealed o.
Figure 4 CTS™ Rotea™ Single-Use Kit
Valve Hole & Tube ID
1
Carrier Frame
2
Bubble Trap
3
Location Hole
4
CFC Chamber
5
Rotary Coupling
6
14
2D Barcode
7
Pump Tubing
8
Tube Retainer
9
Valve H Hole
10
Location Hole
11
Kit Tubing (Input and Output)
12
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Wetted components
The materials used in the manufacturing of the CTS™ Rotea™ Single-Use Kit have been chosen for their
biological and chemical compatibility.
ComponentDescriptionMaterial
Pump tubing
Kit tubing
Chapter 1 Product information
System overview
Pump tubeBioprene
1
CFC ChamberC
Rotary Coupling
Bubble Trap
0.160” OD, 0.116” ID
(4 mm OD, 3 mm ID)
BaseTritan MX711
ConeTritan MX711
O-RingsEPDM, 70 DURO, FDA compliant
Cannular316 SS
CapTritan MX711
BodyTritan MX711
Bush & CollarKetron LSG Peek Classix, USP
BaseTritan MX711
CapTritan MX711
DEHP-FREE PVC
Class VI
Fittings
Triple Y ConnectorPVC
Barbed T-ConnectorPolyproylene
Allowed chemicals for wetted surfaces
Chemical
WFI100%5 minutes
Ethanol in water50%5 minutes
Culture media100%5 minutes
CTS™ Rotea™ Counterflow Centrifugation System User Guide
ConcentrationMaximum exposure time
15
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2
Packaging contents
•
Rotea™ instrument
•
Hanger posts (2 o)
•
Mains plug IEC cables (USA/EUROPE/AUSTRALIA)
•
Pre-fitted mains fuses (2 x 5A)
•
USB-C (male) to USB-C (female)
•
Dell™ 2‑in‑1 laptop tablet (this will be in a separate carton)
Instrument installation
•
Remove outer packaging
•
Prepare bench space to receive Rotea™ instrument unit (see “Working space” on page 10) ensuring
that there is easy access to the “On/O” switch and mains IEC connector at the rear of the
instrument
Installation and setup
CAUTION! The Rotea
it is the user’s responsibility to ensure all safety hazards and functional risks are addressed including
adequately supporting the weight of the instrument and having sucient wheel span so that both the
trolley and instrument are stable.
•
Ensure that the bench is stable and level to within ±0.4" (10 mm)
•
Position the instrument on the bench with a minimum of 4" (10 m) between the rubber feet and the
edges of the bench
CAUTION! The Rotea
appropriate care and seek assistance if necessary when lifting or moving the instrument. Lift the
instrument, holding between the rubber feet on the bottom of the instrument.
CAUTION! Do not position the instrument is such a way that it would make it dicult to disconnect
the power cord from the power inlet.
CAUTION! If using an alternate mains cable, ensure it is rated for at least 10A.
™
instrument should be installed on a stable bench. If a mobile set up is used,
™
instrument weighs 40 lbs (18 kg) excluding hanger bag posts. Use
16
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1
2
Chapter 2
Note: Suitable means of protective earthing are provided for this device
Installation and setup
Instrument installation
2
Figure 5 Back view of instrument
Mains IEC connector
1
USB-C port
2
1.
Connect mains IEC connector.
2.
Plug mains into power GPO
3.
Connect the laptop to USB-C port on the instrument using the USB-C cable.
4.
Insert 2 o bag hanger posts, adjust height to suit Kit and turn nut clockwise to secure in place.
5.
Adjust the instrument position on the bench where it is required.
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1
Chapter 2 Installation and setup
2
Power instrument “On”
Power instrument “On”
1.
Switch on using the mains IEC switch at the rear of the instrument.
2.
The instrument button lights will sequence as the instrument powers up. If the door is closed, the
instrument will automatically check if a Single-Use Kit is installed.
18
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Power instrument “O”
1
Switch o the instrument using the mains IEC switch or mains power.
Chapter 2 Installation and setup
Power instrument “O”
2
CAUTION! There is no automatic recovery procedure. If a loss of power event has occurred see
“Restart after shut down” on page 117.
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Chapter 2 Installation and setup
2
Installation
Installation
The Dell™ 2‑in‑1 laptop will be pre-installed with Windows™ OS. The latest CTS™ Rotea™ Graphical User
Interface (GUI) software will need to be installed onto the Dell™ 2‑in‑1 laptop provided. New releases of
the Rotea™ GUI software will be available for download from thermofisher.com.
1.
Download the Rotea-X.X.X.exe installer.
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Chapter 2
2.
Run the Rotea-X.X.X.exe installer. Click Install. The application will be installed in C:\Program
Files (x86)\Rotea\.
Installation and setup
Installation
2
3.
Click Close to finish the app installation.
4.
Power on the Rotea™ instrument (with the switch on the back) and plug it into the laptop.
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Chapter 2 Installation and setup
2
Installation
5.
The next step is to update Windows™ software. Make sure the laptop is connected to the local wifi
network. This can be done by opening the start menu and searching for Check for updates.
6.
Click Check for updates, Install now and restart the laptop as required. This process may need
to be repeated multiple times until Windows™ software is completely up to date.
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Chapter 2
7.
Check if Windows Update installed the required USB device drivers. Right click on This PC on the
desktop and open Manage.
8.
Ensure the USB devices are detected correctly. Check that the devices highlighted in figure can be
seen:
•
USB Vision Digital Camera
•
USB Serial Port (COM X)
•
SNAPI Imaging Interface
Installation and setup
Installation
2
Note: If these devices are missing ensure the USB cable is plugged in, the Rotea™ instrument is
powered and on, that there are no more Windows™ software updates to complete.
9.
The installation is now complete. Move onto setting up the application for the first time.
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Chapter 2 Installation and setup
2
First time setup
First time setup
1.
Push the power button on the laptop to start Windows™ software.
2.
Run the Rotea™ application from the desktop or start menu. The application has a single admin
user with Username: admin, Password: admin on a fresh installation.
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Chapter 2 Installation and setup
First time setup
3.
The main navigation menu in the top right corner is used to get to all areas of the applications.
2
4.
Click the Settings in the navigation menu to set the instrument name. Edit the instrument name if
required.
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2
Chapter 2
First time setup
5.
Installation and setup
Click User Management in the navigation menu to change the admin username/password. This
page shows all the users configured for in the application. Click the admin user to change the
account details. New users can be added with the + button.
6.
Change the admin user account username, password and the default directory for this user to find
protocols. Click Save for any changes.
7.
The configuration is now complete.
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Download protocols
Create protocols
Protocols comprise a series of individual steps that are to be perfomed by the instrument. Triggers are
used to define when the instrument will move to the next step. A range of existing protocols can be
downloaded from the Thermo Fisher Scientific portal.
Users can also modify existing protocols or create entirely new protocols using the Rotea ProtocolApp that can be installed on any Windows™ PC, laptop or tablet.
Protocols can be saved for future retrieval using the GUI.
The Rotea Protocol App can be accessed at any time by clicking on the icon on the desktop.
Chapter 2 Installation and setup
Download protocols
2
Load a protocol
1.
Click on the Select a Protocol button
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Chapter 2 Installation and setup
2
Download protocols
2.
Click Browse or Select a Protocol to browse for a protocol stored locally or on any connected
devices.
28
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Chapter 2 Installation and setup
Download protocols
3.
Double click the required protocol to display the filename in the Protocol File text box.
2
4.
Click on Select Protocol.
Note: If an invalid protocol is selected, a warning box will be displayed.
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Chapter 2 Installation and setup
2
Download protocols
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Rotea™ GUI dashboard
123456
109
8
7
The Rotea™ GUI dashboard is the primary means of navigation around the Rotea™ GUI and operation
of the Rotea™ instrument. It can be operated using the laptop touch screen only or with the keyboard
attached.
Chapter 2 Installation and setup
Download protocols
2
Live video of the spinning centrifuge chamber
1
Kit View for the current step
2
Instrument name
3
Protocol name and list of adjacent steps (current step in bold)
4
Username
5
Minimize screen
6
Dropdown menu
7
Shortcut to Step List
8
Manual speed adjustment (buttons or keyed values)
9
Resettable timer
10
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Chapter 2 Installation and setup
2
Download protocols
User Management
1.
Select User Management from the dropdown menu.
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2.
Click on the + icon to add a new user.
Chapter 2 Installation and setup
Download protocols
2
3.
Type in new Username and Password.
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Chapter 2 Installation and setup
2
Download protocols
4.
Confirm new password.
5.
Select Access Level from dropdown list.
6.
Select default folder for saving protocols.
7.
Click Add Account to save new user settings.
8.
Edit user account details including setting Access Level.
34
9.
Click Save or Cancel.
Note: Edits to Access Level can only be performed by a user with admin rights.
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10.
Select to delete a user.
Chapter 2 Installation and setup
Download protocols
2
11.
Click Confirm or Cancel.
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Chapter 2 Installation and setup
2
Download protocols
12.
Users without admin rights can edit their profile by selecting Profile from the dropdown menu.
13.
Edit user profilefields.
14.
Click Save or Cancel.
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Uninstall
1.
Open the Add or remove programs utility by searching for it in the start menu.
Chapter 2 Installation and setup
Uninstall
2
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Chapter 2 Installation and setup
2
Logging
2.
Search and remove the Rotea™ application.
3.
Wait for the uninstall to complete and the Rotea™ application will be removed. The user
database and log files will not be deleted when the application is uninstalled. If the user
wants to permanently delete them, they need to be deleted manually by removing the
C:\ProgramData\Rotea directory.
Logging
The application saves several logs. The main logs of interest to the user are the run logs which contain a
run history of each run performed by the laptop.
The run log files are saved in: C:\ProgramData\Rotea\logs\run_logs.
The service logs are saved in: C:\ProgramData\Rotea\logs\service and may be required for
warranty claims and to help resolve application issues.
Note: The ProgramData directory is a hidden directory, typing C:\ProgramData\Rotea in the
address bar will take you to the directory.
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Chapter 2 Installation and setup
You can also add notes to the run log.
• Click Add Log Comment in the dropdown menu during a protocol run.
Logging
2
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Chapter 2 Installation and setup
2
Logging
• Write comment in the comment box and click Add Comment.
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3
Open the door
The instrument door is automatically locked by the instrument and can only be opened when the:
•
Instrument is powered up
•
Blue door unlock button is illuminated
•
Instrument is not currently running a protocol
•
Centrifuge carrier and peristaltic pump are stationary
Basic instrument operation
1.
Press
pushbutton when it is illuminated to unlock the door.
2.
Open the door and raise until past vertical.
Note: Soft close hinges prevent the door from opening or closing abruptly.
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Chapter 3 Basic instrument operation
3
Open the door
Note: An emergency maintenance access method can be used to open the door should this be
required e.g. in the case of power loss – (See “Open the door without power” on page 111).
When the unlock button is pressed, the safety circuit is disabled to prevent the pump or centrifuge from
operating and triggers the following:
•
Pinch valves retract
•
Pump clamp is released
•
Door is unlocked and partially opens
Note: If there is a Single-Use Kit installed on the instrument, unlocking the door will release the valves
that are clamping the tubes of the kit closed. Any fluids in bags or vessels attached to the kit will be free
to flow. Close all manual tube clamps before opening the door.
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Kit preparation, loading and removal
Kit configuration
Once a protocol has been selected to run on the instrument, the Kit View on the Rotea™ GUI
dashboard will display a schematic of the CTS™ Rotea™ Single-Use Kit with bag connections.
Chapter 3 Basic instrument operation
Kit preparation, loading and removal
3
Figure 6 Instrument with CTS™ Rotea™ Single-Use Kit
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
Figure 7 Rotea™ GUI showing Kit View
CAUTION! The Single-Use Kit has been designed exclusively for use with the Rotea
and includes several features to enable fast, error-free loading by the user. It is the responsibility of
the user to ensure correct assembly and loading of the Single-Use Kit prior to initiating an instrument
protocol.
™
instrument
CAUTION! Only use kits supplied by Thermo Fisher Scientific or its agents.
CAUTION! Inspect each Single-Use Kit for any damage or imperfections that may result in incorrect
operation. Do not use kit if any such defect is found.
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Pre-assembly of processing kit
1.
Peel open the sealed pouch and remove the Single-Use Kit.
Chapter 3 Basic instrument operation
Kit preparation, loading and removal
3
2.
Release the CFC Chamber from the Carrier Frame if still retained.
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
Connecting vessels, bags and reagents
The instrument has been specifically designed for single use, functionally closed processing. The CTS
Rotea™ Single-Use Kit uses DEHP-Free PVC 0.160” OD tubing to enable sterile welding to compatible
bags using devices that service the blood banking industry such as the TSCD II Sterile Tubing Welder
(TerumoBCT). See the instructions provided by instrument providers for completion of sterile welding.
™
46
Figure 8 TSCD II Sterile Tubing Welder (TerumoBCT)
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Bubble Trap
12
To manage air in the system, the CTS™ Rotea™ Single-Use Kit includes a small bubble trap with a
capacity of approximately 5 mL.
Chapter 3 Basic instrument operation
Kit preparation, loading and removal
3
Figure 9 CTS™ Rotea™ Single-Use Kit and close-up of Bubble Trap
CTS™ Rotea™ Single-Use Kit
1
Close-up of Bubble Trap
2
CAUTION! Once the Bubble Trap volume is consumed, any additional air in the system will now
be able to enter the CFC Chamber and ultimately cause an over-pressure fault, shutting down the
instrument.
CAUTION! Protocols created for the Rotea
™
instrument must include a suitable priming sequence
to ensure air in fluid supply lines and the Bubble Trap is replaced with fluid prior to commencing
processing.
Note: If the length of tubing from the product supply bag has a volume greater than the Bubble Trap,
then air can enter the circuit. It is therefore preferred that the length of tubing for each connection (1/8”
ID assumed) is less than 12” (or 300 mm). In some cases where the supply vessel is large, e.g. remote
bioreactor, additional process strategies can be included to re-fill the supply tube when needed.
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
Kit installation
1.
Ensure door is open and any previous Single-Use Kit has been removed.
2.
Hang input / output bags on hanger hooks.
Note: The product input bag can be suspended using one of the side cut-outs on the bag to help
ensure that all product drains from the bag.
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Chapter 3 Basic instrument operation
Kit preparation, loading and removal
3.
Place the Carrier Frame over the two Single-Use Kit location buttons on the instrument.
3
4.
Install the CFC Chamber into the CFC Chamber Carrier.
a.
Load CFC Chamber into the CFC Chamber Carrier.
b.
Push CFC Chamber down into CFC Chamber Carrier to depress latch.
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
c.
Slide CFC Chamber away from axis of rotation until the latch clicks.
5.
Insert tubes A, B, C, D, E, F & G into the corresponding slot in the Bubble Detector Strip and push
downwards with fingers to fully engage each tube in the slot.
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Chapter 3 Basic instrument operation
Kit preparation, loading and removal
6.
Stretch the pump tubing around the Peristaltic Pump rollers and insert the Tube Retainer into the
Sensor Block to hold it in place.
3
Pump tube barbed connector correctly placed in the Sensor Block.
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
7.
Insert tubing in Sensor Block channel.
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1
2
Chapter 3 Basic instrument operation
Kit preparation, loading and removal
Correct: Pressure Sensor tubing in
1
Incorrect: Pressure Sensor tubing out
2
CAUTION! The instrument cannot detect if the pump tubing or Tube Retainer have been correctly
positioned. Check prior to closing the door.
3
CAUTION! The tube will sit slightly proud of the channel in the region of the Pressure Sensor so that
the tube is compressed into the required shape when the door is closed. If not correctly located in the
channel, the tubing may be crushed when the door is closed.
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Chapter 3 Basic instrument operation
3
Kit preparation, loading and removal
Initiate a protocol
1.
Click Initiate to commence running the protocol.
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2.
Close the door.
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Kit preparation, loading and removal
3
Note: Soft close hinges prevent the door from dropping suddenly.
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Kit preparation, loading and removal
3.
Push the door downwards to compress the Single-Use Kit tubing onto Pressor Sensors and other
control features.
4.
(auto): Closing the door initiates the following automatic system checks. The status of each system
check is displayed on the Rotea™ GUI with indicating correct installation of the Single-Use Kit.
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Kit preparation, loading and removal
5.
Errors detected during the automatic system check are identified with a and will require the user
to identify and rectify the source of the error.
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Kit preparation, loading and removal
6.
Manually confirm that the Single-Use Kit configuration matches the image and that manual clamps
have been opened.
7.
Click Confirm to continue.
CAUTION! Manual clamps are provided for use on input and output lines on the Single-
Use Kit to prevent fluid movement until the instrument Pinch Valves are engaged. However,
manual clamps also represent a significant process hazard if left in the closed state. Whilst
the instrument should detect this failure mode as an over-pressure fault, it will stop the
process potentially compromising the batch. Release all manual clamps prior to starting theautomatic sequence.
If required by the selected protocol:
8.
Enter data inputs.
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9.
Click Confirm or Cancel.
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Kit preparation, loading and removal
10.
The protocol is automatically sent to the instrument and the Rotea™ GUI dashboard is displayed for
the new protocol.
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Run a protocol
Rotea™ GUI navigation and instrument operation
1.
Press the Start button on the instrument to start the protocol.
2.
Change the Rotea™ GUI dashboard view as required by clicking on the tabs.
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Run a protocol
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Run a protocol
3.
The live video will automatically turn on when the centrifuge speed exceeds 500 × g. The live video
can be manually turned on at any operating speed by clicking on the Turn on video toggle.
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Run a protocol
4.
The instrument will automatically progress through each step in the protocol until the protocol is
complete, pre-defined user intervention is required or an error occurs.
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Run a protocol
5.
Depending on user access rights, the user can make in-process adjustments to the following
parameters using the control buttons:
•
Reset Step Time Remaining
•
Increase/reduce Pumpflow rate
•
Increase/reduce Centrifuge g-force
6.
Switch to the Step List to see a summary of all steps in the protocol.
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7.
Return to the dashboard by clicking on or using the dropdown menu.
Run a protocol
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Run a protocol
Value volumes and pressure sensor values
When in Kit View, click on the Details to display the current net volume that has passed through each
valve and the current pressure of P1 and P2.
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When the valve volume is positive, more liquid has been pumped out through a valve than has been
pumped in, increasing the volume in the attached bag. A negative value means more liquid has been
pumped in through a valve than has been pumped out, reducing the bag volume.
The example, shows that the net valve volumes are as follows:
1. + 105.2 mL has been pumped out through valve A
2. - 76.0 mL has been pumped in through valve B
3. - 54.6 mL has been pumped in through valve D
4. + 24.9 mL has been pumped out through valve G
5. A small volume of + 0.3 mL has been pumped out through valves E & F which occurred during the
Prime Pressure step.
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Note:
The valve volumes are not the same as the volume that has entered or left a bag. In the example
·
shown, the input bag (cells in culture) is a dual port bag connected to both valve D and G. To
calculate the volume change in or out of the input bag, add the valve volumes for valves D and G e.g.
- 54.6 + 24.9 = - 29.7mL (out of the input bag)
The valve volume is the volume displaced by the pump and hence does not account for volume
·
retained in the Single-Use Kit during priming. For example, the net volume for valve A would overestimate the volume that has been delivered to the waste bag by the volume of the CFC Chamber
plus the kit tubing.
Note: The Pressor Sensors, P1 and P2, are at a low negative pressure meaning there is a slight
vacuum in the system. These will fluctuate during processing depending on the flow rate and pump
direction. A rapidly increasing Pressure Sensor value would indicate a flow restriction or blockage.
Error messages
Chapter 3 Basic instrument operation
Run a protocol
3
Alarm or
message
Safety system
error
Protocol is
Malformed
Door lock errorYes—Trigger instrument stop stateDoor lock error
Critical
alarm
Yes—Cut power to pump and
Yes—GUI error message after loading
WarningInstrument responseGUI message
centrifuge, trigger instrument
stop state
protocol will appear
Safety system error
Protocol run has stopped.
Press the stop button on
the instrument, close manual
clamps and open and close
the instrument door to reset.
Restart the protocol or select
a protocol step to start from. If
error persists, abort the run.
Protocol is Malformed error
Note: Check pump calibration
number to ensure protocol flow
rates are within range.
Protocol run has stopped.
Open and close the door, then
restart the protocol. If error
persists, abort the run.
Protocol run has stopped.
Press the stop button to clear
the error, then restart the
protocol or select a step to
start from. If error persists,
abort the run.
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Yes—Trigger instrument stop stateInstrument out of balance
WarningInstrument responseGUI message
Protocol run has stopped.
Press the stop button on
the insturment, close manual
clamps and open and close
the instrument door to reset.
Restart the protocol or select
a protocol step to start from. If
error persists, abort the run.
Protocol run has stopped.
Press the stop button on
the instrument, close manual
clamps and open and close
the instrument door to reset.
Restart the protocol or select
a protocol step to start from. If
error persists, abort the run.
Protocol run has stopped.
Press the stop button to clear
the error, then restart the
protocol or select a step to
start from. If error persists,
abort the run.
Moisture in bowlYes—Trigger instrument stop stateCentrifuge leak detected
Protocol run has stopped.
Press the stop button to
clear the error or temporarily
override the moisture sensor if
safe to do so. If error persists,
abort the run.
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(continued)
Chapter 3 Basic instrument operation
Kit removal
3
Alarm or
message
Over-pressure
condition
Communication
error
Kit removal
CAUTION! Seal all fluid lines using a tube sealer or manual clamps prior to unlocking the door to
prevent fluid movement when the instrument pinch valves are released.
Protocol run has stopped.
Ensure manual clamps are
open and bags are connected
correctly. Press the stop button
to relieve pressure to Bag X.
Restart the protocol or select a
protocol step to start from.
Communication error
protocol, GUI indicates error
until communications are
restored
Ensure that the cable between
the laptop interface and
instrument is connected.
1.
Press pushbutton when it is illuminated to unlock the door.
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Kit removal
2.
Open the door and raise until past vertical.
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Kit removal
3.
Remove the CFC Chamber from the CFC Chamber Carrier by lifting the lever and rotating the CFC
Chamber back towards the latch.
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Kit removal
4.
Lift CFC Chamber clear of the Centrifuge Carrier.
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5.
Remove the tubing from the Sensor Block and Peristaltic Pump.
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Aseptic disconnection of the kit components
6.
Gently raise the Carrier Frame drawing out the tubes from the Bubble Sensor.
Aseptic disconnection of the kit components
If not done prior to Single-Use Kit removal from the instrument:
•
Create sterile seal and disconnect finished product from the Single-Use Kit.
•
Create sterile seal and disconnect any bags or subassemblies to be disposed of separately or
manually clamp tube connections to bags if preferred.
•
Dispose of used Single-Use Kit in accordance with approved procedures.
Note: The Single-Use Kit tube materials are suitable for RF sealing using a SEBRA or Terumo Tube
Sealer or equivalent. Please consult the tube sealer supplier’s manual for instructions on creating a
sterile disconnection.
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System settings
Instrument firmware
1.
Select Settings from the drop down menu.
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System settings
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System settings
2.
Click on the Firmware tab.
3.
Select the latest firmware.
4.
Click Update.
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5.
The selected firmware will be automatically updated.
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System settings
6.
The system will automatically reboot.
7.
Once firmware has updated successfully, click Done.
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8.
If firmware has not been updated click Done and restart the firmware update.
System settings
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System settings
OPC-UA
An Open Platform Communications - United Architecture (OPC-UA) interface is provided that enables
admin users to connect Rotea™ instrument to a Supervisory Control and Data Acquisition (SCADA)
system to send protocols, start a protocol and monitor run progress, see Chapter 4, “OPC-UA
interface”.
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Settings
Admin users have the ability to update the instrument settings via the Rotea Settings tab.
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System settings
Licenses
All relevant software licenses are listed in the Licenses tab. The detail for each license can be displayed
by clicking on the v arrows.
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Calibration
1.
Select Calibration () from the drop down menu.
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Calibration
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Calibration
2.
Input Target Volume.
3.
Input Actual Volume from calibration test run.
4.
Select Kit Type from the drop down list.
5.
Click Calibrate.
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6.
Click Save or Cancel.
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Calibration
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Calibration
7.
Click Done if calibration is successful.
8.
If calibration was not successful, click Done and restart the calibration process.
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4
Introduction
There are applications for the CTS™ Rotea™ Counterflow Centrifugation System where a Supervisory
Control and Data Acquisition (SCADA) system will supervise the operation. This supervision will include
items like sending a protocol to the Rotea™ instrument, starting a protocol and monitoring of run
progress.
Each CTS™ Rotea™ Counterflow Centrifugation System includes a dedicated Dell™ 2‑in‑1 laptop with
software applications to program and operate the instrument. An open data communication interface is
also included to interface with SCADA systems.
One SCADA system is the Emerson DeltaV. DeltaV is technically a Process Control System (PCS), but it
incorporates all the functionality of a SCADA system, and those are the functions that will be primarily
used with the Rotea™ instrument.
OPC-UA interface
Definitions
Abbreviation
GUIGraphical User Interface
DeltaVA Process Control System (PCS made by Emerson
ERPEnterprise Resource Planning
MESManufacturing Execution System
PCSProcess Control System
PLCProgrammable Logic Controller
ProtocolA series of equipment instructions
RunThe execution (running) of a protocol, from beginning to end
SCADASupervisory Control and Data Acquisition
OPC-UAOpen Platform Communications - United Architecture, a machine to
Definition
machine communication protocol for industrial automation
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Chapter 4
Scope of system
OPC-UA interface
Scope of system
CTS™ Rotea™ Counterflow Centrifugation System is a stand alone instrument with an operational
configuration comprising:
• The instrument hardware
• Firmware and software
• Dell™ 2‑in‑1 laptop
• The installed CTS™ Rotea™ Single-Use Kit and attached tubing and bags/vessels
• The protocol file
• In-process data that is supplied as protocol metadata before the protocol commences
Instrument hardware configuration
The Rotea™ instrument's embedded control has been designed to enable integration of functional
components that are external to the base instrument and hence would vary the configuration from the
standard:
• External components may be externally powered
• Communications from the Rotea™ instrument's embedded control to external components is
through a CAN-BUS interface
• External devices may be individual devices already defined in the Rotea™ instrument's embedded
schema such as a pump, centrifuge, push button, bubble sensor or valve
• External devices may be newly defined with a set of device specific commands and status reports
• External devices may also comprise a series of components managed by a self-contained control
that responds to purpose designed messages from the Rotea™ instrument's embedded through the
CAN-BUS
Single-Use Kit
The Single-Use Kit defines:
• The fluidic connections between instrument components such as the pump and valves
• The size of the pump tubing for each pump
• Optionally the volume capacity of each attached bag/vessel
• Optionally the priming volume for each valve line
• Optionally the required minimum volume for each reagent supply to be attached
The Single-Use Kit is identified by:
• A barcode read from a label attached to the kit
• The kit identification includes a unique number, batch identification number and kit type specifier.
The kit type specifier is used for verification of kit type to the protocol requirements.
The scope of a Single-Use Kit may extend beyond the base instrument to include attached devices
such as external mixers and pumps, or simply the tubing or other features that facilitate connection to
external systems such as bio-reactors or electroporation systems that are not managed by the Rotea
instrument's control.
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Protocol file
• Protocol files for the Rotea™ instrument will be stored and transmitted in JSON format.
• The JSON format provides an extensible structure to support future devices and software
functions.
• The Rotea™ instrument's embedded control supports one only protocol file.
• The protocol file is re-written to the instrument each time the protocol is run.
Protocol metadata
Protocol metadata entries provide the means to adjust fixed,qualified protocols to respond to process
conditions.
• Metadata is supplied at the time the protocol is transferred to the instrument
• The metadata populates variables that are needed to complete the protocol definition
• This is managed by the IAL as part of the protocol transfer actions
Chapter 4
OPC-UA interface
MES interface
4
MES interface
A Manufacturing Execution System (MES) interface is provided to enable processing by the Rotea
instrument within a qualified clinical cGMP environment.
Background
The CTS™ Rotea™ Counterflow Centrifugation System is for research use or manufacture of cell, gene or
tissue-based products.
For use in a qualified manufacturing processes, the instrument, Single-Use Kit and protocol must be
qualified and maintained fit for purpose for the application.
When a qualified process is run, a record is required to verify that the process was performed in the
formally defined way. If any variation to the process operations occur, then such events need to be
documented and formally reviewed before the product can be released.
An MES interface is a communication system that links the CTS™ Rotea™ Counterflow Centrifugation
System to a formally qualified electronic batch management system and associated data capture and
record management functions.
The MES system is responsible for formal identification of users, their level of training, recording of
equipment, consumables and events associated with each processing run.
The CTS™ Rotea™ Graphical User Interface (GUI) does not support this formal data capture activity.
If an automated electronic interface is part of the implementation plan for CTS™ Rotea™ Counterflow
Centrifugation System, then the MES interface provides that tool.
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4
MES interface
Electronic communications
It is assumed the MES applications will be located externally to the CTS™ Rotea™ Counterflow
Centrifugation System.
Communications by any MES system to the instrument will be through the CTS™ Rotea™ GUI installed
on the Dell™ 2‑in‑1 laptop attached to the instrument. View the structure diagram, see “MES run a
protocol” on page 104.
Figure 10 System components
Communications protocol
The MES interface to the Rotea™ instrument application will be through an implementation of OPC-UA.
When enabled in the Rotea™ GUI, an OPC-UA server will run on the laptop allowing an MES OPC-UA
client to connect to it.
The commands and reports available to OPC-UA client are outlined (see “MES – Commands and
reports overview” on page 91) with details (see “OPC-UA interface” on page 96).
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Chapter 4
MES – Commands and reports overview
OPC-UA interface
4
Figure 11 Run protocol workflow
For more use cases, See “Use case sequence diagrams” on page 104.
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4
MES – Commands and reports overview
OPC-UA interface
Enable OPC-UA
The OPC-UA interface is not enabled by default. The enable button is available to an administrator
under the Settings: OPC-UA Setup tab. The OPC-UA server only supports one OPC-UA client
connecting to it. The Rotea™ application uses a Unified Automation OPC-UA stack which supports
a number of configurable parameters, including: encryption level, security level, certificateconfiguration,
valid certificates, end point addresses, server names, server url, etc. The full list of parameters can
be found at the following link. http://documentation.unified-automation.com/uasdkcpp/1.7.0/html/
L2ServerSdkServerConfig.html#server_config_xml_file
The Rotea™ application configurationfile is available on the laptop under:
The user can modify the configurationfile to suit their needs. The configurationfile is loaded when the
laptop is started if the OPC-UA server is enabled or when the OPC-UA server is enabled under the
OPC-UA Setup tab.
Log in to instrument
The MES can login to the Rotea™ GUI at any time, it does so by changing the SetGuiUserLevel node.
Full details of the SetGuiUserLevel values, see “OPC-UA interface” on page 96.
Load protocol
A protocol can be loaded three ways:
1. SetLocalProtocolFilePath – Sets the file path on the laptop of where to load the protocol file.
2. SetProtocolFileContents – Supply the protocol file contents to transfer to Rotea™ GUIRotea™ and
the instrument.
3. SetProtocolFileByLookupTableId – Select a protocol based on the id in a lookup table. The user
must generate a YAML file called OPCUAProtocolList.yaml with the ids and filenames in it.
This is an example OPCUAProtocolList.yamlfile with 2 files in it:
The user must set the directory where the OPCUAProtocolList.yamlfile can be found. This is done
on the OPC-UA settings page.
Note: The YAML file can be modified in any text editor. Freeware program NotePad++ is used in the
illustration.
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Confirmation of protocol loading can be obtained from the ProtocolName and ProtocolChecksum
reports. ProtocolCheckSum can be used to verify integrity of protocol file transfer from uncontrolled
repositories.
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The protocol checksum is an hexidecimal number with 32 characters.
Example: e152abb59e4949980731c5bbf7194b
It can be saved and compared as a string.
The ProtocolState report should now report ProtocolSelected.
Load kit
The instrument verification process needs the instrument door to be closed and a valid kit to be
detected. The kit ID is read by the instrument when the door is closed.
The DoorState is reported Closed, and the KitID string is supported by KitState report that checks the
kit type against that required for the protocol. If the kit ID is valid and aligned to the protocol then the
KitState is reported as valid.
Transfer metadata
Protocols can be defined with metadata or parameters that allow a qualified recipe to respond to
changing input materials and output targets.
Chapter 4
MES – Commands and reports overview
OPC-UA interface
4
Refer to the sequence diagram, see “MES drives Rotea in response to external systems” on page 106.
After the protocol information is loaded the instrument will set ParameterName1 throughParameterName20 to the names of the variables that need to set in the protocol metadata.
The MES can check ParameterValid1 to ParameterValid20 to determine the status of metadatadefinition for the protocol. This will advise if that parameter is in use, if it has been set, and if the
setting is valid.
To set the value, use SetParameter1 through SetParameter20 and supply an Int32 value.
Initialize protocol on to instrument
Once the protocol has been specified, kit loaded and any metadata defined within acceptable ranges,
set the SetProtocolState to SendProtocolToRotea.
The protocol definition is sent to the instrument and ProtocolState will report ProtocolReadyToStart.
Start/Stop/Pause/Resume protocol
• The MES can Start, Stop and Pause/Resume the instrument with SetProtocolState variable.
• The ProtocolState will report ProtocolRunning.
• These actions are available through the buttons on the instrument when enabled.
• The MES can disable Start, Pause and Advance functions with the SetSkipButtonEnable and
SetPlayPauseButtonEnable. When the buttons are enabled they will follow the configuration in the
protocol file, if they are disabled the buttons on the instrument are disabled.
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• When the instrument completes the protocol or is stopped for any other reason, the instrument
state will be reported as InstrumentReady. This provides the option for the protocol to be restarted using StartatStep or other administrator actions from the InstrumentReady state.
• When a user with administrator authority is logged in via the MES or without MES supervision, the
Pause and Advance instrument buttons become active independent of protocol settings.
Instrument run status
The instrument status can be monitored on the Rotea™ GUIor via the exposed OPC-UA variables.
• The ProtocolState will report ProtocolRunning or ProtocolPaused.
• The ProtocolStepNumber reports the current step.
• WaitingUserAck reports if the instrument is waiting for verification to proceed to the next step or
repeat the current step. The MES uses SetProtocolState to RunProtocol to repeat the same step,
or SkipToNextStep in response to this state.
MES batch history data
• The Rotea™ Run Manager captures the run history data into a unique file each time the protocol is
run.
• Run history contains details of the process conditions throughout the run.
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Alarm recovery tools
• Alarm reset commands; these may include active instrument reactions such as opening valves for a
controlled period to release pressure.
• Several options for product recovery are available through MES commands:
– Re-start the protocol at a specified step. The protocol can contain dedicated blocks of code
independent of the main process.
– Download a new protocol and start it at a specified step
– Start running the settings of a single step in the existing protocol.
• The MES can also log in a qualified user with administrative privileges to run the instrument from
the Rotea™ GUI as a manual intervention.
– All actions are recorded in the history files and instrument status is reported to the MES
– To return to MES managed operations, the administrator user logs out of the MES. The MES
then logs in as ViewUser again. (The instrument can be running the protocol while users/MES
log in and log out.)
Chapter 4 OPC-UA interface
MES – Commands and reports overview
4
Figure 12 OPC-UA enabled administrator to perform recovery
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