The information in this User’s Manual has been carefully reviewed and is believed to be accurate.
The vendor assumes no responsibility for any inaccuracies that may be contained in this document,
makes no commitment to update or to keep current the information in this manual, or to notify any
person or organization of the updates. Please Note: For the most up-to-date version of this
manual, please see our web site at www.supermicro.com.
Super Micro Computer, Inc. ("Supermicro") reserves the right to make changes to the product
described in this manual at any time and without notice. This product, including software and documentation, is the property of Supermicro and/or its licensors, and is supplied only under a license.
Any use or reproduction of this product is not allowed, except as expressly permitted by the terms
of said license.
IN NO EVENT WILL SUPER MICRO COMPUTER, INC. BE LIABLE FOR DIRECT, INDIRECT,
SPECIAL, INCIDENTAL, SPECULATIVE OR CONSEQUENTIAL DAMAGES ARISING FROM THE
USE OR INABILITY TO USE THIS PRODUCT OR DOCUMENTATION, EVEN IF ADVISED OF
THE POSSIBILITY OF SUCH DAMAGES. IN PARTICULAR, SUPER MICRO COMPUTER, INC.
SHALL NOT HAVE LIABILITY FOR ANY HARDWARE, SOFTWARE, OR DATA STORED OR USED
WITH THE PRODUCT, INCLUDING THE COSTS OF REPAIRING, REPLACING, INTEGRATING,
INSTALLING OR RECOVERING SUCH HARDWARE, SOFTWARE, OR DATA.
Any disputes arising between manufacturer and customer shall be governed by the laws of Santa
Clara County in the State of California, USA. The State of California, County of Santa Clara shall
be the exclusive venue for the resolution of any such disputes. Supermicro's total liability for all
claims will not exceed the price paid for the hardware product.
FCC Statement: This equipment has been tested and found to comply with the limits for a Class B
digital device pursuant to Part 15 of the FCC Rules. These limits are designed to provide reasonable protection against harmful interference in a residential installation. This equipment generates,
uses, and can radiate radio frequency energy and, if not installed and used in accordance with the
manufacturer’s instruction manual, may cause interference with radio communications. However,
there is no guarantee that interference will not occur in a particular installation. If this equipment
does cause harmful interference to radio or television reception, which can be determined by turning the equipment off and on, you are encouraged to try to correct the interference by one or more
of the following measures:
•Reorient or relocate the receiving antenna.
•Increase the separation between the equipment and the receiver.
•Connect the equipment into an outlet on a circuit different from that to which the
receiver is connected.
•Consult the dealer or an experienced radio/television technician for help.
California Best Management Practices Regulations for Perchlorate Materials: This Perchlorate warning applies only to products containing CR (Manganese Dioxide) Lithium coin cells. “Perchlorate
Material-special handling may apply. See www.dtsc.ca.gov/hazardouswaste/perchlorate”.
WARNING: Handling of lead solder materials used in this product may expose you to lead, a chemical known to the State of
California to cause birth defects and other reproductive harm.
Manual Revision 1.0a
Release Date: January 21, 2014
Unless you request and receive written permission from Super Micro Computer, Inc., you may not
copy any part of this document. Information in this document is subject to change without notice.
Other products and companies referred to herein are trademarks or registered trademarks of their
respective companies or mark holders.
De uiteindelijke verwijdering van dit product dient te geschieden in overeenstemming
met alle nationale wetten en reglementen.
2-3
X9SCM-IIF/X9SCL-IIF Series User's Manual
2-2 Static-Sensitive Devices
Electrostatic-Discharge (ESD) can damage electronic com ponents. To avoid dam-
aging your system board, it is important to handle it very carefully. The following
measures are generally sufcient to protect your equipment from ESD.
Precautions
• Use a grounded wrist strap designed to prevent static discharge.
• Touch a grounded metal object before removing the board from the antistatic
bag.
• Handle the board by its edges only; do not touch its components, peripheral
chips, memory modules or gold contacts.
• When handling chips or modules, avoid touching their pins.
• Put the motherboard and peripherals back into their antistatic bags when not in
use.
• For grounding purposes, make sure your computer chassis provides excellent
conductivity between the power supply, the case, the mounting fasteners and
the motherboard.
• Use only the correct type of onboard CMOS battery. Do not install the onboard
battery upside down to avoid possible explosion.
Unpacking
The motherboard is shipped in antistatic packaging to avoid static damage. When
unpacking the board, make sure that the person handling it is static protected.
2-4
Chapter 2: Installation
2-3 Processor and Heatsink Installation
Warning: When handling the processor package, avoid placing direct
pressure on the label area of the fan.
Notes:
Always connect the power cord last, and always remove it before adding,
removing or changing any hardware components. Make sure that you in-
stall the processor into the CPU socket before you install the CPU heatsink.
If you buy a CPU separately, make sure that you use an Intel-certied
multi-directional heatsink only.
Make sure to install the system board into the chassis before you install
the CPU heatsink.
When receiving a server board without a processor pre-installed, make
sure that the plastic CPU socket cap is in place and none of the socket
pins are bent; otherwise, contact your retailer immediately.
Refer to the Supermicro website for updates on CPU support.
Installing the LGA1155 Processor
1. Remove the protective plastic cap. Press the load lever to release the load
plate, which covers the CPU socket, from its locking position.
Load Plate
Load Lever
2-5
X9SCM-IIF/X9SCL-IIF Series User's Manual
2. Gently lift the load lever to open the load plate.
3. Use your thumb and your index nger to hold the CPU at the North center
edge and the South center edge of the CPU.
North Center Edge
South Center Edge
4. Align the CPU key that is the semi-circle cutouts against the socket keys.
Once it is aligned, carefully lower the CPU straight down into the socket. (Do
not drop the CPU on the socket. Do not move the CPU horizontally or verti-
cally.
2-6
Chapter 2: Installation
5. Do not rub the CPU against the surface or against any pins of the socket to
avoid damaging the CPU or the socket.)
6. With the CPU inside the socket, inspect the four corners of the CPU to make
sure that the CPU is properly installed.
7. Use your thumb to gently push the load lever down to the lever lock.
CPU properly
installed
Load lever locked
Warning: You can only install the CPU inside the socket only in one direction.
Make sure that it is properly inserted into the CPU socket before closing the
load plate. If it doesn't close properly, do not force it as it may damage your
CPU. Instead, open the load plate again and double-check that the CPU is
aligned properly.
into place
2-7
X9SCM-IIF/X9SCL-IIF Series User's Manual
Installing a Passive CPU Heatsink
1. Do not apply any thermal grease to the heatsink or the CPU die -- the re-
quired amount has already been applied.
2. Place the heatsink on top of the CPU so that the four mounting holes are
aligned with those on the Motherboard's and the Heatsink Bracket under-
neath.
3. Screw in two diagonal screws (i.e., the #1 and the #2 screws) until just snug
(-do not over-tighten the screws to avoid possible damage to the CPU.)
4. Finish the installation by fully tightening all four screws.
Screw#1
Screw#2
Motherboard
Mounting Holes
Recommended Supermicro
heatsink:
SNK-P0046P heatsink with BKT-
0028L bottom bracket
Heatsink Bracket
2-8
Chapter 2: Installation
Removing the Heatsink
Warning: We do not recommend that the CPU or the heatsink be removed.
However, if you do need to uninstall the heatsink, please follow the instruc-
tions below to uninstall the heatsink to prevent damage done to the CPU
or the CPU socket.
1. Unscrew the heatsink screws from the motherboard in the sequence as shown
in the illustration below.
2. Gently wriggle the heatsink to loosen it from the CPU. (Do not use excessive
force when wriggling the heatsink!!)
3. Once the CPU is loosened, remove the CPU from the CPU socket.
4. Clean the surface of the CPU and the heatsink, removing the used thermal
grease. Reapply the proper amount of thermal grease on the surface before
re-installing the CPU and the heatsink.
Loosen screws in
sequence as shown.
Screw#4
Screw#1
Motherboard
Screw#2
Screw#3
Remove the Heatsink
Bracket from underneath
the motherboard.
2-9
X9SCM-IIF/X9SCL-IIF Series User's Manual
Installing an Active Fan
CPU Heatsink
1. Locate a fan power connector on
the motherboard. (Refer to the
layout for the fan locations.)
2. Position the heatsink so that the
heatsink fan wires are closest to the
fan power connector and are not
interfered with other components.
3. Inspect the CPU Fan wires to make
sure that the wires are routed
through the bottom of the heatsink.
4. Remove the thin layer of the protec-
tive lm from the copper core of the
heatsink.
Warning: CPU may overheat
if the protective lm is not re-
moved from the heatsink.
Thermal Grease
Heatsink
Fins
5. Apply the proper amount of thermal
grease on the CPU.
Note: if your heatsink came with
a thermal pad, please ignore
this step.
6. If necessary, rearrange the wires
to make sure that the wires are not
pinched between the heatsink and
the CPU. Also make sure to keep
clearance between the fan wires
and the ns of the heatsink.
7. Align the four heatsink fasteners
with the mounting holes on the
motherboard. Gently push the pairs
2-10
Recommended Supermicro
heatsink:
SNK-P0046A4 active heatsink
of diagonal fasteners (#1 &
#2, and #3 & #4) into the
mounting holes until you hear
a click. Also, make sure to
orient each fastener so that
the narrow end of the groove
is pointing outward.
8. Repeat Step 7 to insert all
four heatsink fasteners into
the mounting holes.
9. Once all four fasteners are
securely inserted into the
mounting holes, and the heat-
sink is properly installed on
the motherboard, connect the
heatsink fan wires to a Fan
connector.
Chapter 2: Installation
2-11
X9SCM-IIF/X9SCL-IIF Series User's Manual
Removing the Heatsink
Warning: We do not recommend that
the CPU or the heatsink be removed.
However, if you do need to remove the
heatsink, please follow the instructions
below to remove the heatsink and to
prevent damage done to the CPU or
other components.
Active Heatsink Removal
1. Unplug the power cord from the
power supply.
2. Disconnect the heatsink fan wires
from the fan header.
3. Use your nger tips to gently press
on the fastener cap and turn it
counterclockwise to make a 1/4 (900)
turn, and pull the fastener upward to
loosen it.
Unplug the
PWR cord
4. Repeat Step 3 to loosen all fasteners
from the mounting holes.
5. With all fasteners loosened, remove
the heatsink from the CPU.
2-12
Pull Up
Chapter 2: Installation
2-4 Installing DDR3 Memory
Note: Check the Supermicro website for recommended memory modules.
CAUTION
Exercise extreme care when installing or removing DIMM
modules to prevent any possible damage.
DIMM Installation
1. Insert the desired number of DIMMs into the memory slots, starting with
DIMM2A. (For best performance, please use the memory modules of the
same type and speed in the same bank.)
2. Push the release tabs outwards on both ends of the DIMM slot to unlock it.
3. Align the key of the DIMM module with the receptive point on the memory
slot.
4. Align the notches on both ends of the module against the receptive points on
the ends of the slot.
Notches
X9SCM/X9SCL(-F) Rev.1.0
Release Tabs
5. Use two thumbs together to press the notches on both ends of the module
straight down into the slot until the module snaps into place.
Press both notches
straight down into
the memory slot.
6. Press the release tabs to the lock positions to secure the DIMM module into
the slot.
Removing Memory Modules
Reverse the steps above to remove the DIMM modules from the motherboard.
2-13
X9SCM-IIF/X9SCL-IIF Series User's Manual
Memory Support
The X9SCM-II/X9SCL-II series supports up to 32GB of Unbuffered (UDIMM) DDR3
ECC 1600/1333/1066 MHz DIMMs in 4 memory slots.
DIMM2B
(Blue Slot)
DIMM1B
DIMM2A
(Blue Slot)
DIMM1A
Memory Population Guidelines
When installing memory modules, the DIMM slots should be populated in the following
order: DIMM2A, DIMM2B, DIMM1A and DIMM1B.
• Always use DDR3 DIMM modules of the same size, type and speed.
• Mixed DIMM speeds can be installed. However, all DIMMs will run at the speed
of the slowest DIMM.
• The motherboard will support one DIMM module or three DIMM modules installed,
but it is recommended that a balanced DIMM population (installed in pairs) are
followed for best performance.
Recommended Population (Balanced)
DIMM2A SlotDIMM2B SlotDIMM1A SlotDIMM1B SlotTotal System Memory
2GB DIMM2GB DIMM4GB
2GB DIMM2GB DIMM2GB DIMM2GB DIMM8GB
4GB DIMM4GB DIMM8GB
4GB DIMM4GB DIMM4GB DIMM4GB DIMM16GB
8GB DIMM8GB DIMM16GB
8GB DIMM8GB DIMM8GB DIMM8GB DIMM32GB
2-14
Chapter 2: Installation
The table explains the different types of memory supported that can be accomodated
in each memory slot.
DDR3 Unbuffered ECC (UDIMM) Memory
DIMM Slots per
Channel
21Unbuffered
22Unbuffered
DIMMs Populat-
ed per Channel
DIMM TypePOR SpeedsRanks per DIMM (any
DDR3
DDR3
1066, 1333Single Rank, Dual Rank
1066, 1333, 1600Single Rank, Dual Rank
combination)
Note: Due to memory allocation to system devices, the amount of memory that
remains available for operational use will be reduced when 4 GB of R AM is used.
The reduction in memory availability is disproportional.
For Microsoft Windows users: Microsoft implemented a design change in the Win-
dows XP with Service Pack 2 (SP2) and Windows Vista. This change is specic
to the behavior of Physical Address Extension (PAE) mode which improves driver
compatibility. For more information, please read the following article at Microsoft’s
Knowledge Base website at: http://support.microsoft.com/kb/888137.
Possible System Memory Allocation & Availability
System DeviceSizePhysical Memory
Firmware Hub ash memory (System BIOS)1 MB3.99
Local APIC4 KB3.99
Area Reserved for the chipset2 MB3.99
I/O APIC (4 Kbytes)4 KB3.99
PCI Enumeration Area 1256 MB3.76
PCI Express (256 MB)256 MB3.51
PCI Enumeration Area 2 (if needed) -Aligned on 256-MB
boundary-
VGA Memory16 MB2.85
TSEG1 MB2.84
Memory available to OS and other applications 2.84
512 MB3.01
Remaining (-Available)
(4 GB Total System
Memory)
2-15
X9SCM-IIF/X9SCL-IIF Series User's Manual
2-5 Motherboard Installation
All motherboards have standard mounting holes to t different types of chassis.
Make sure that the locations of all the mounting holes for both motherboard and
chassis match. Although a chassis may have both plastic and metal mounting fas-
teners, metal ones are highly recommended because they ground the motherboard
to the chassis. Make sure that the metal standoffs click in or are screwed in tightly.
Then use a screwdriver to secure the motherboard onto the motherboard tray.
Tools Needed
Philips Screwdriver
Philips Screwdriver
Location of Mounting Holes
COM2
USB 12/13
JBT1:CMOS CLEAR
LE7
JI2C2
JI2C1
SLOT4 PCI-E 2.0 X4 ON X8
SLOT5 PCI-E 2.0 X4 ON X8
JPB:BMC
1-2:ENABLE
2-3:DISABLE
JI2C1/JI2C2
ON:Enable
JPL1:LAN1
1-2:ENABLE
OFF:Disable
2-3:DISABLE
JPG1: VGA
JPL2:LAN2
1-2:Enable
JBT1
T-SGPIO1
JL1:CHASSIS INTRUSION
1-2:ENABLE
2-3:Disable
2-3:DISABLE
B1
JS2
JS1
I-SATA1
I-SATA0
T-SGPIO2
JL1
J29
U4
JWOL
JPG1
USB4/5
USB2/3
J24
USB11
I-SATA5
JS6
I-SATA4
JS5
JS3JS4
LE4
LE3
I-SATA3
I-SATA2
LE2
5V
GND
GND
JWF1
FANA
JWF1:DOM PWR
SLOT6 PCI-E 2.0 X8
JPME1
J31
U3
JPL2
JPBJPL1
SLOT7 PCI-E 2.0 X8
JPME2
FAN3
Standoffs
JPUSB1:B/P USB WAKE UP
DIMM2B
J12
2-3:DISABLE
1-2:ENABLE
KB/MOUSE
JPUSB1
JPW2
JPW1
JPI2C
JLED1:3 pin Power LED
JLED
JF1
PWR
LED
JF1
HDD
LED
NIC1
NIC2
OH/
FF
X
RST
PWR
ON
DIMM4
FAN1
VGA
1
FAN4
JLAN1
JLAN2
LAN2
LAN1
U82
COM1
COM1
1
JTPM
USB/0/1
IPMI
_LAN
CPU
DDR3 1066/1333 UDIMM required
DIMM3
DIMM1
DIMM2
DIMM1B
DIMM2A
DIMM1A
SPKR1
FAN2
JSPK:Buzzer/Speaker
JWD
JSPK
JWD
1-2:RST
2-3:NMI
Caution: 1) To prevent damage to the motherboard and its components, please do
not use a force greater than 8 lb/inch on each mounting screw during motherboard
installation. 2) Some components are very close to the mounting holes. Please take
precautionary measures to avoid damaging these components when installing the
motherboard to the chassis.
2-16
Chapter 2: Installation
Installing the Motherboard
1. Install the I/O shield into the chassis.
2. Locate the mounting holes on the motherboard.
3. Locate the matching mounting holes on the chassis. Align the mounting holes
on the motherboard against the mounting holes on the chassis.
4. Install standoffs in the chassis as needed.
5. Install the motherboard into the chassis carefully to avoid damaging mother-
board components.
6. Using the Philips screwdriver, insert a Pan head #6 screw into a mounting
hole on the motherboard and its matching mounting hole on the chassis.
7. Repeat Step 5 to insert #6 screws into all mounting holes.
8. Make sure that the motherboard is securely placed in the chassis.
Note: Images displayed are is for illustration only. Your chassis or compo-
nents might look different from those shown in this manual.
2-17
X9SCM-IIF/X9SCL-IIF Series User's Manual
2-6 Connectors/IO Ports
The I/O ports are color coded in conformance with the PC 99 specication. See the
gure below for the colors and locations of the various I/O ports.
Back I/O Panel
JPL2
JPBJPL1
LE7
JPUSB1:B/P USB WAKE UP
J12
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
1-2:ENABLE
JPB:BMC
B1
OFF:Disable
ON:Enable
JI2C1/JI2C2
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC2
DIMM4
DIMM3
DIMM2
DIMM1
JS2
JS6
JS5
JS3JS4
I-SATA5
I-SATA4
LE4
FAN1
DIMM2B
JWD
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
JSPK
JSPK:Buzzer/Speaker
DIMM1A
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
I-SATA3
I-SATA2
JWF1:DOM PWR
JWF1
LE3
LE2
5V
GND
GND
2
5
6
1
4
3
Back I/O Panel
1. Keyboard (Purple)6. COM 1
2. PS/2 Mouse (Green)7. VGA
3. USB Port 08. LAN1
4. USB Port 19. LAN2
5. IPMI LAN
2-18
7
8
9
Chapter 2: Installation
1
2
ATX PS/2 Keyboard/Mouse
Ports
The ATX PS/2 keyboard and
PS/2 mouse are located next to
the Back Panel USB Ports 0/1 on
the motherboard. See the table at
right for pin denitions.
PS/2 Keyboard/Mouse Pin
Denitions
PS2 KeyboardPS2 Mouse
Pin# Denition Pin# Denition
1KB Data1Mouse Data
2No Connection2No Connection
3Ground3Ground
4Mouse/KB VCC
(+5V)
5KB Clock5Mouse Clock
6No Connection6No Connection
VCC: with 1.5A PTC (current limit)
4Mouse/KB VCC
(+5V)
1. Keyboard (Purple)
2. Mouse (Green)
2-19
X9SCM-IIF/X9SCL-IIF Series User's Manual
4
3
5
6
1
2
Universal Serial Bus (USB)
Two Universal Serial Bus ports (USB
0/1) are located on the I/O back panel.
In addition, six USB connections (USB
2/3, USB 4/5, USB 12/13) are used to
provide front chassis access. USB 11
is a Type A Connector. (USB Cables
are not included). See the tables on
the right for pin denitions.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
B1
USB2/3
USB4/5
Back Panel USB 0/1
Pin# Denition Pin# Denition
1+5V5+5V
2USB_PN06USB_PN1
3USB_PP07USB_PP1
4Ground8Ground
Front Panel USB 2/3, 4/5, 12/13
Pin # DenitionPin # Denition
1+5V6+5V
2USB_PN2 7USB_PN3
3USB_PP2 8USB_PP3
4Ground9Ground
5No Con-
nection
X
ON
FF
LED
RST
PWR
LED
HDD
PWR
OH/
NIC1
NIC2
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
JS6
I-SATA5
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
Pin Denitions
Pin Denitions
10Key
1. Backpanel USB 0
2. Backpanel USB 1
3. Front Panel USB 2/3
4. Front Panel USB 4/5
5. Front Panel USB 12/13
6. Internal 'Type A' USB 11
2-20
Chapter 2: Installation
1
2
3
Ethernet Ports
Two Ethernet ports (LAN1/LAN2) are
located next to the VGA port on the
I/O Backpanel. In addition, an IPMI
Dedicated LAN is also located above
USB 0/1 ports on the X9SCM-IIF/
X9SCL-IIF to provide a dedicated net-
work connection for IPMI 2.0. These
ports accept RJ45 type cables.
Notes
Please refer to the LED In-
dicator Section for LAN LED
information.
LAN Ports
Pin Denition
Pin# Denition
1TD0-10SGND
2TD0+11P3V3SB
3TD1-12Act LED
4TD1+13Link 100 LED
5TD2-14Link 1000 LED
6TD2+15Ground
7TD3-16Ground
8TD3+17Ground
9P2V5SB88Ground
(NC: No Connection)
1. LAN1
2. LAN2
3.IPMI Dedicated LAN
(Green, +3V3SB)
(Yellow, +3V3SB)
2-21
X9SCM-IIF/X9SCL-IIF Series User's Manual
1
2
Serial Ports
A COM Port (COM1) is located on
the I/O bac kpan el, and anoth er Ser ial
Connection (COM2) is located below
PCI-E Slot4 to provide front access.
See the table on the right for pin
denitions.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
Serial Port Pin Denitions
(COM1/COM2)
Pin # DenitionPin # Denition
1DCD6DSR
2RXD7RT S
3TXD8CTS
4DTR9RI
5Ground10NC
1. COM1
2. COM2
JPW2
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-22
Chapter 2: Installation
1
1
Video Connector
A Video (VGA) connector is located
next to the COM Port on the I/O
backpanel. This connector is used
to provide video and CRT display.
Refer to the board layout below for
the location.
VGA/CRT Pin
Denitions
Pin# Denition Pin# Denition
1Red10Ground
2Green11NC
3Blue12 MS1: SDA (DDC Data)
4NC13 HSYNC
5Ground14VSYSNC
6Ground15MS3: SCL (DDC CLK)
7Ground16Case
8Ground17Case
95V
NC= No Connection
1. VGA
2-23
X9SCM-IIF/X9SCL-IIF Series User's Manual
Front Control Panel
JF1 contains header pins for various buttons and indicators that are normally lo-
cated on a control panel at the front of the chassis. These connectors are designed
specically for use with Supermicro server chassis. See the gure below for the
descriptions of the various control panel buttons and LED indicators. Refer to the
following section for descriptions and pin denitions.
Reset
1
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
X
PWR
Reset Button
Power Button
Power LED
HDD LED
NIC1 LED
NIC2 LED
OH/Fan Fail LED
X
Ground
Ground
2
JF1 Header Pins
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
B1
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
Pin 2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
Pin 15Pin 16
Pin 1
2-24
Front Control Panel Pin Denitions
Chapter 2: Installation
Power LED
The Power LED connection is located
on pins 15 and 16 of JF1. Refer to the
table on the right for pin denitions.
HDD LED
The HDD LED connection is located
on pins 13 and 14 of JF1. Attach a
cable here to indicate the status or
HDD-related activity. See the table on
the right for pin denitions.
A
Power LED
HDD LED
B
NIC1 LED
NIC2 LED
OH/Fan Fail LED
Power LED
Pin Denitions (JF1)
Pin# Denition
153.3V/vcc
16Ground
HDD LED
Pin Denitions (JF1)
Pin# Denition
133.3V/vcc
14HD Active
A. PWR LED
B. HDD LED
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
X
Ground
Ground
2
2-25
X
Reset
Reset Button
Power Button
PWR
1
X9SCM-IIF/X9SCL-IIF Series User's Manual
NIC1/NIC2 (LAN1/LAN2)
The NIC (Network Interface Controller)
LED connection for LAN port 1 is located
on pins 11 and 12 of JF1, and the LED
connection for LAN Port 2 is on Pins 9 and
10. NIC1 LED and NIC2 LED are 2-pin
NIC LED headers. Attach NIC LED cables
to the NIC1 and NIC2 LED indicators to
display network activity. Refer to the table
on the right for pin denitions.
Overheat (OH)/Fan Fail/Front
Connect an LED cable to the OH/Fan
Fail connections on pins 7 and 8 of JF1
to display advanced warnings for chassis
overheat/fan failure. Refer to the table on
the right for pin de nitions.
LAN1/LAN2 LED
Pin Denitions (JF1)
Pin# Denition
9/11Vcc
10/12 LAN Active
OH/Fan Fail LED
Pin Denitions (JF1)
Pin# Denition
7Vcc/Blue UID LED
8OH/Fan Fail LED
OH/Fan Fail Indicator
Status
State Denition
OffNormal
OnOverheat
Flash-
Fan Fail
ing
A. NIC1 LED
B. NIC2 LED
C. OH/Fan Fail
A
B
OH/Fan Fail LED
C
Power LED
HDD LED
NIC1 LED
NIC2 LED
Ground
Ground
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
X
2
X
Reset
Reset Button
Power Button
PWR
1
2-26
Reset Button
The Reset Button connection is located
on pins 3 and 4 of JF1. Attach it to a
hardware reset switch on the computer
case. This switch is used to hard reset/
reboot the system. Refer to the table on
the right for pin denitions.
Chapter 2: Installation
Reset Button
Pin Denitions (JF1)
Pin# Denition
3Reset
4Ground
Power Button
The Power Button connection is located
on pins1 and 2 of JF1. Momentarily con-
tacting both pins will power on/off the sys-
tem. This button can also be congured
to function as a suspend button (with a
setting in the BIOS - see Chapter 4). To
turn off the power in the suspend mode,
press the button for at least 4 seconds.
Refer to the table on the right for pin
denitions.
Power LED
HDD LED
NIC1 LED
NIC2 LED
OH/Fan Fail LED
X
Power Button
Pin Denitions (JF1)
Pin# Denition
1Signal
2Ground
A. Reset Button
B. PWR Button
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
LED_Anode+
X
Ground
Ground
2-27
Reset
Reset Button
Power Button
PWR
2
1
A
B
X9SCM-IIF/X9SCL-IIF Series User's Manual
2-7 Connecting Cables
This section provides brief descriptions and pin-out denitions for onboard headers
and connectors. Be sure to use the correct cable for each header or connector. For
information on Backpanel USB and Front Panel USB ports, refer to Page 2-17. For
COM Port 1 and COM Port 2, please see Page 2-19.
ATX Main PWR & CPU PWR
Connectors
The 24-pin main power connector
(JPW1) is used to provide power to
the motherboard. The 8-pin CPU PWR
connector (JPW2) is also required for
the processor. These power connectors
me et th e SSI EPS 12V spec ica tio n. Se e
the table on the right for pin denitions.
A
24-Pin Main PWR
JPUSB1:B/P USB WAKE UP
J12
JPL2
JPBJPL1
LE7
B
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
JI2C1
JI2C2
SLOT4 PCI-E 2.0 X4 ON X8
COM2
8-Pin Processor PWR
A
JPW1
CPU
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB4/5
USB 12/13
B
JPI2C
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
USB2/3
J24
ATX Power 24-pin Connector
Pin Denitions (JPW1)
Pin# Denition Pin # Denition
13+3.3V1+3.3V
14-12V2+3.3V
15COM3COM
16PS_ON4+5V
17COM5COM
18COM6+5V
19COM7COM
20Res (NC)8PWR_OK
21+5V95VSB
22+5V10+12V
23+5V11+12V
24COM12+3.3V
12V 8-pin Power Connec-
tor Pin Denitions
Pins Denition
1 through 4Ground
X
ON
FF
LED
RST
PWR
LED
HDD
PWR
OH/
NIC1
NIC2
JF1
JF1
DIMM4
DIMM2B
DIMM3
DIMM1B
DIMM2A
DIMM2
DIMM1A
DIMM1
JS2
JBT1
USB11
JBT1:CMOS CLEAR
JS1
JS6
JS5
JS3JS4
I-SATA5
I-SATA4
LE3
LE4
5 through 8+12V
FAN1
JWD
1-2:RST
2-3:NMI
JWD
A. 24-Pin ATX Main PWR
JSPK
JSPK:Buzzer/Speaker
SPKR1
B. 8-Pin Processor PWR
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE2
5V
GND
GND
(Required)
2-28
Chapter 2: Installation
F
Fan Headers
The X9SCM-IIF/X9SCL-IIF has ve fan headers
(Fan 1~Fan 4 and Fan A). These fans are 4-pin
fan headers. However, Pins 1-3 of the fan head-
ers are backward compatible with the traditional
3-pin fans. A fan speed control setting in the
BIOS Hardware Monitoring section allows the
BIOS to automatically set fan speeds based on
the system temperature. Refer to the table on
the right for pin denitions.
Note: Please use all 3-pin fans or all
4-pin fans on a motherboard. Please
do not use 3-pin fans and 4-pin fans
on the same board.
Chassis Intrusion
A Chassis Intrusion header is located at JL1 on
the motherboard. Attach the appropriate cable
from the chassis to inform you of a chassis intru-
sion when the chassis is opened.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
D
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
B1
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
FF
RST
PWR
OH/
NIC2
JS6
I-SATA5
I-SATA4
Fan Header
Pin Denitions
Pin# Denition
1Ground (Black)
22.5A/+12V
(Red)
3Tachometer
4PWM_Control
Chassis Intrusion
Pin Denitions (JL1)
Pin# Denition
1Intrusion Input
2Ground
ON
FAN1
DIMM4
DIMM3
DIMM2
DIMM1
A
DIMM2B
JWD
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
JSPK
DIMM1A
SPKR1
A. Fan 1
B. Fan 2
JSPK:Buzzer/Speaker
C. Fan 3
FAN2
B
D. Fan 4
E. Fan A
F. Chassis Intrusion
FAN3
C
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
JS5
JS3JS4
E
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-29
X9SCM-IIF/X9SCL-IIF Series User's Manual
Internal Buzzer
The Internal Buzzer (SPKR1) can be
used to provide audible indications for
various beep codes. See the table on
the right for pin denitions.
Speaker
On the JSPK header, Pins 3~4 are
used for internal speaker. Close Pins
3~4 with a jumper to use the onboard
speaker. If you wish to use an external
speaker, attach the speaker cable to
Pins 1~4. See the table on the right
for pin denitions.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
Internal Buzzer
Pin Denition
Pin# Denitions
Pin 1Pos. (+)Beep In
Pin 2Neg. (-)Alarm
Speaker Connector
Speaker
Pin Denitions
Pin Setting Denition
Pins 3~4Internal Speaker
Pins1~4External Speaker
A. Internal Buzzer
B. Speaker Header
X
ON
FF
LED
RST
PWR
LED
HDD
PWR
OH/
NIC1
NIC2
JF1
JPI2C
CPU
USB2/3
USB4/5
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
B
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
A
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-30
Chapter 2: Installation
Onboard Power LED
An onboard Power LED header is
located at JLED. This Power LED
header is connected to Front Control
Panel located at JF1 to indicate the
status of system power. See the table
on the right for pin denitions.
Power Supply I2C Connector
Power Supply I2C Connector, located
at JPI2C, monitors the status of the
power supply, fan and system tem-
perature. See the table on the right
for pin denitions.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
B
JPI2C
CPU
B1
USB2/3
USB4/5
USB 12/13
A
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
Onboard PWR LED
Pin Denitions
Pin# Denition
1VCC
2No Connection
3Connection to PWR
LED in JF1
PWR Supply I2C
Pin Denitions
Pin# Denition
1Clock
2Data
3PWR Fail
4 Ground
53.3V
A. PWR LED
B. PWR SMB
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-31
X9SCM-IIF/X9SCL-IIF Series User's Manual
T-SGPIO 1/2 Headers
Two T-SGPIO (Serial-Link General
Purpose Input/Output) headers are
located near the SATA connectors
on the motherboard. These headers
are used to communicate with the
enclosure management chip in the
system. See the table on the right
for pin denitions. Refer to the board
layout below for the locations of the
headers.
TPM Header
This header is used to connect a
Trusted Platform Module (TPM), which
is available from a third-party vendor.
A TPM is a security device that sup-
ports encryption and authentication
in hard drives. It enables the moth-
erboard to deny access if the TPM
associated with the hard drive is not
installed in the system. See the table
on the right for pin denitions.
Serial_Link-SGPIO
Pin Denitions
Pin# Denition Pin Denition
1NC2NC
3Ground4DATA Out
5Load6Ground
7Clock8NC
NC: No Connections
Trusted Platform Module Header
Pin Denitions
Pin # DenitionPin # Denition
1LCLK2GND
3LFRAME4No Pin
5LRESET6VCC5
7LAD38LAD2
9VCC310LAD1
11LAD012GND
13RSV014RSV1
15SB3V16SERIRQ
17GND18CLKRUN
19LPCPD20RSV2
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
C
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
DIMM2A
DIMM2
DIMM1A
DIMM1
SPKR1
JPME2
J31
JPME1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JS6
JS5
JS3JS4
I-SATA2
I-SATA3
I-SATA5
I-SATA4
JWF1
LE3
LE2
LE4
5V
GND
GND
1-2:RST
2-3:NMI
JWD
JSPK
JSPK:Buzzer/Speaker
FAN2
FAN3
U3
U4
J29
JL1
B
JL1:CHASSIS INTRUSION
A
FANA
JWF1:DOM PWR
A. T-SGPIO 1
B. T-SGPIO 2
C. TPM Header
2-32
Chapter 2: Installation
DOM PWR Connector
The Disk-On-Module (DOM) power
connector, located at JSD1, provides
5V (Gen1/Gen) power to a solid state
DOM storage device connected to one
of the SATA ports. See the table on the
right for pin denitions.
Stand-by Power
The Stand-by Power header for pe-
ripheral devices is located at JSTBY1
on the motherboard. See the table
on the right for pin denitions. (You
must also have a peripheral card with
a compatible connector and cable to
use this feature.)
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
USB2/3
USB4/5
B
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
DOM PWR
Pin Denitions
Pin# Denition
15V
2Ground
3Ground
Stand-by Power
Pin Denitions
(JWOL)
Pin# Denition
1+5V Standby
2Ground
3Wake-up
A.DOM PWR
B. Stand-by Power
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
A
2-33
X9SCM-IIF/X9SCL-IIF Series User's Manual
2-8 Jumper Settings
Explanation of Jumpers
To modify the operation of the mother-
board, jumpers can be used to choose
between optional settings. Jumpers create
shorts between two pins to change the
function of the connector. Pin 1 is identied
with a square solder pad on the printed
circuit board.
Note: On two pin jumpers,
"Closed" means the jumper is on,
and "Open" means the jumper is
off the pins.
LAN Port Enable/Disable
Jumpers JPL1/JPL2 enable or disable
LAN Port 1/LAN Port 2 on the moth-
erboard. See the table on the right for
jumper settings. The default setting is
enabled.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
A
LAN2
B
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
GLAN Enable
Jumper Settings
Pin# Denition
1-2Enabled (default)
2-3Disabled
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
DIMM2A
DIMM2
DIMM1A
DIMM1
SPKR1
JPME2
J31
JPME1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JS6
JS5
JS3JS4
I-SATA2
I-SATA3
I-SATA5
I-SATA4
LE3
LE2
LE4
5V
GND
GND
A. LAN Port 1 Enable
B. LAN Port 2 Enable
1-2:RST
2-3:NMI
JWD
JSPK
JSPK:Buzzer/Speaker
FAN2
FAN3
U3
U4
J29
JL1
JL1:CHASSIS INTRUSION
FANA
JWF1:DOM PWR
JWF1
2-34
Chapter 2: Installation
Clear CMOS
JBT1 is used to clear the CMOS memory. Instead of pins, this
"jumper" consists of contact pads to prevent accidental clearing
of CMOS. To clear CMOS, use a metal object such as a small
screwdriver to touch both pads at the same time to short the
connection. Always remove the AC power cord from the system
before clearing CMOS.
Note: For an ATX power supply, you must completely shut down the
system, remove the AC power cord and then short JBT1 to clear CMOS.
PCI Slot SMB Enable
Use Jumpers I2C1/I2C2 to enable PCI
SMB (System Management Bus) support
to improve system management for the
PCI slots. See the table on the right for
PCI Slot SMB Enable
Jumper Settings
Jumper Setting Denition
ShortEnabled
Open (Default)Disabled
jumper settings.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
C
JPW1
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
SLOT5 PCI-E 2.0 X4 ON X8
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
B
JI2C1
JI2C2
SLOT4 PCI-E 2.0 X4 ON X8
COM2
JPI2C
CPU
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
A
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
JS6
JS5
I-SATA5
I-SATA4
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
Contact Pads
A. Clear CMOS
B. JI2C1
C. JI2C2
2-35
X9SCM-IIF/X9SCL-IIF Series User's Manual
VGA Enable
JPG1 allows you to enable or disable
the onboard VGA connector. The default
position is on pins 1 and 2 to enable
VGA. See the table on the right for
jumper settings.
Watch Dog Enable
Watch Dog (JWD) is a system moni-
tor that can reboot the system when a
software application hangs. Close Pins
1-2 to reset the system if an applica-
tion hangs. Close Pins 2-3 to generate
a non-maskable interrupt signal for the
application that hangs. See the table on
the right for jumper settings. Watch Dog
must also be enabled in the BIOS.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
A
JPI2C
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
CPU
B1
USB2/3
USB4/5
VGA Enable/Disable
Jumper Settings (JPG1)
Both Jumpers Denition
Pins 1-2Enabled
Pins 2-3Disabled
Watch Dog
Jumper Settings
Jumper Setting Denition
Pins 1-2Reset (default)
Pins 2-3NMI
OpenDisabled
X
ON
FF
LED
RST
PWR
LED
HDD
PWR
OH/
NIC1
NIC2
JF1
JF1
JLED
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
A. VGA Enable
B. Watch Dog Timer Enable
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JBT1
JS6
JS5
I-SATA5
I-SATA4
J24
USB11
JBT1:CMOS CLEAR
JL1:CHASSIS INTRUSION
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-36
Chapter 2: Installation
USB Wake-Up
Use the jumper JPUSB1 to "wake-up" your
system by pressing a key on a USB keyboard
or clicking the USB mouse connected to the
Backplane USB Ports 0/1. JPUSB1 is used
together with a USB Wake-Up feature in the
BIOS. Enable this jumper and the USB sup-
port in the BIOS to wake up your system via
USB devices.
Note: When the USB is set to Enabled in
the BIOS, and JPUSB1 is set to Disabled,
remove the USB devices from Backplane
USB Ports 0/1 before the system goes
into the standby mode.
BMC Enable
JPB is used to enable or disable the BMC
(Baseboard Management Control) chip and
the onboard IPMI connection. This jumper is
used together with the IPMI settings in the
BIOS. See the table on the right for jumper
settings.
JPUSB1 (Backplane USB
0/1 Wake-up Enable)
Pin# Denition
1-2Enabled (Default)
2-3Disabled
BMC IPMI Enable/Disable
Jumper Settings
Settings Denition
Pins 1-2Enabled (Default)
Pins 2-3Disabled
JPL2
JPBJPL1
LE7
JPUSB1:B/P USB WAKE UP
J12
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPW1
A
JPI2C
CPU
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
DIMM1A
DIMM1
SPKR1
A. BP USB 0/1 Wake-up
JSPK
B. BMC Enable
JSPK:Buzzer/Speaker
FAN2
B
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB2/3
USB4/5
USB 12/13
JBT1
JS6
JS5
I-SATA5
I-SATA4
J24
USB11
JBT1:CMOS CLEAR
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-37
X9SCM-IIF/X9SCL-IIF Series User's Manual
ME Recovery
When enabled, Intel ME Recovery (JPME1)
is used to update the ME (Management En-
gine) rmware. When disabled, the rmware
is protected.
BIOS Recovery
When enabled, Intel ME Recovery (JPME2)
is used to update the BIOS rmware. When
disabled, the rmware is protected.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
B1
USB2/3
USB4/5
Pin# Denition
1-2Enabled
OpenNormal (Default)
Pin# Denition
1-2Enabled
OpenNormal (Default)
X
ON
FF
LED
RST
PWR
LED
HDD
PWR
OH/
NIC1
NIC2
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
B
A
JS2
JBT1
JS6
JS5
I-SATA5
I-SATA4
J24
USB11
JBT1:CMOS CLEAR
ME Recovery
(JPME1)
BIOS Recovery
(JPME2)
A. JPME1
B. JPME2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
2-38
Chapter 2: Installation
LAN 1/LAN 2
2-9 Onboard Indicators
LAN 1/LAN 2 LEDs
Two LAN ports (LAN 1/LAN 2) are located
on the I/O backpanel of the motherboard.
Each Ethernet LAN port has two LEDs. The
yellow LED indicates activit y, while the Link
LED may be green, amber, or off to indicate
the speed of the connections. See the
tables at right for more information.
IPMI Dedicated LAN LEDs
In addition to LAN 1/LAN 2, an IPMI Dedi-
cated LAN is also located on the X9SCM-IIF/
X9SCL-IIF. The yellow LED on the right in-
dicates activity, while the green LED on the
left indicates the speed of the connection.
See the tables at right for more information.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
C
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
A
JLAN2
B
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB 12/13
JPI2C
CPU
B1
USB2/3
USB4/5
LED
LED
HDD
PWR
NIC1
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
LAN1 LAN2
Link LED
LAN 1/LAN 2
Link LEDs (Green/Amber/Off)
LED Color Denition
OffNo Connection or 10 Mbps
Green100 Mbps
Amber1 Gbps
IPMI LAN Link LED (Left) &
Activity LED (Right)
Status Color Denition
Link (Left)Green: Solid100 Mbps
Activity
(Right)
Yellow: Blinking
IPMI LAN
Link LED
X
ON
FF
RST
PWR
OH/
NIC2
FAN1
DIMM2B
DIMM1B
DIMM2A
DIMM1A
SPKR1
JPME2
J31
JPME1
I-SATA1
I-SATA0
JS1
T-SGPIO2
T-SGPIO1
I-SATA2
I-SATA3
LE3
LE2
JWD
1-2:RST
2-3:NMI
JWD
JSPK
JSPK:Buzzer/Speaker
FAN2
FAN3
U3
U4
J29
JL1
JL1:CHASSIS INTRUSION
FANA
JWF1:DOM PWR
JWF1
5V
GND
GND
A. LAN Port 1
B. LAN Port 2
C. IPMI LAN
DIMM4
DIMM3
DIMM2
DIMM1
JS2
JS6
JS5
JS3JS4
I-SATA5
I-SATA4
LE4
Activity LED
Active
Activity LED
C
B
A
2-39
X9SCM-IIF/X9SCL-IIF Series User's Manual
Onboard Power LED
An Onboard Power LED is located at LE2
on the motherboard. A lit LE2 indicates
that the motherboard is either booting, or
it is up and running. See the layout below
for the LED location.
Unsupported Memory LED
The Unsupported Memory LED is located
at location LE3. When this LED blinks/
ashes, it indicates that there is an un-
supported DIMM module installed.
Power Standby LED
The Power Standby LED is located at
LE4. When the power supply is plugged
into an AC outlet, and the power sup-
ply hard switch is switched on, LE4 will
turn on indicating Power Standby mode.
Please make sure LE4 is off before
performing service on the motherboard.
IPMI Heartbeat LED
An IPMI Heartbeat LED is located at
LE7. Whe n LE 7 blinks, the IPM I fu nc tions
properly. Refer to the table on the right
for details. Also see the layout below for
the LED location.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
D
JPW1
_LAN
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
SLOT5 PCI-E 2.0 X4 ON X8
JI2C1
JI2C2
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
SLOT4 PCI-E 2.0 X4 ON X8
JWOL
JPG1
USB 12/13
COM2
JPI2C
CPU
B1
USB2/3
USB4/5
LED
LED
HDD
PWR
JF1
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
X
ON
FF
RST
PWR
OH/
NIC1
NIC2
JS2
JS6
JS5
I-SATA5
I-SATA4
C
Onboard PWR LED
Status Denition
OffSystem Off
OnSystem On (running)
Unsupported Memory LED (LE3)
Green: BlinkingUnsupported Memory
is Installed
Green: SteadyNormal/No Error
Power Standby LED Indicator (LE4)
LED Settings
Green: Solid On Standby Power is On
Green: OffStandby Power is Off
IPMI Heartbeat LED Indicator (LE7)
(either the power supply hard switch is off or
system is unplugged,
or BOTH.)
LED Settings
Green: BlinkingIPMI is Active
A. Onboard PWR LED
B. Unsupported Memory LED
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
FAN3
JPME2
J31
JPME1
U3
U4
J29
JL1
I-SATA1
I-SATA0
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
FANA
JS3JS4
I-SATA3
I-SATA2
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
A
B
C. Power Standby LED
D. IPMI Heartbeat LED
2-40
Chapter 2: Installation
F
2-10 SATA Connections
Note the following conditions when connecting the Serial ATA disk drive cables:
• Be sure to use the correct cable for each connector. Refer to Page 1-1 for cables
that came with your shipment.
• A red mark on a wire indicates the location of pin 1.
SATA Connections
Six Serial ATA (SATA) connectors (I-SATA
0~5) are located on the motherboard. I-
SATA Ports 0/1 support SATA-III (6Gb/s),
and I-SATA Ports 2~5 support SATA-II
(3Gb/s). These Serial Link connections
support standard SATA drives. Please
refer to the BIOS section (Chapter 4) for
setup information See the table on the
right for pin denitions.
JPUSB1:B/P USB WAKE UP
1-2:ENABLE
KB/MOUSE
2-3:DISABLE
J12
JPW2
JPUSB1
IPMI
_LAN
USB/0/1
COM1
COM1
1
JTPM
VGA
U82
1
FAN4
LAN1
JLAN1
JLAN2
LAN2
JPL2
JPBJPL1
LE7
JI2C1
JI2C2
COM2
SLOT7 PCI-E 2.0 X8
SLOT6 PCI-E 2.0 X8
SLOT5 PCI-E 2.0 X4 ON X8
SLOT4 PCI-E 2.0 X4 ON X8
JPW1
CPU
2-3:DISABLE
2-3:DISABLE
2-3:DISABLE
1-2:ENABLE
JPL2:LAN2
JPL1:LAN1
1-2:ENABLE
JPB:BMC
1-2:ENABLE
B1
JI2C1/JI2C2
OFF:Disable
ON:Enable
JPG1: VGA
2-3:Disable
1-2:Enable
JWOL
JPG1
USB2/3
USB4/5
USB 12/13
LED
HDD
PWR
JF1
JPI2C
JF1
JLED
JLED1:3 pin Power LED
DDR3 1066/1333 UDIMM required
JBT1
J24
USB11
JBT1:CMOS CLEAR
SATA Connectors
Pin Denitions
Pin# Signal
1Ground
2SATA_TXP
3SATA_TXN
4Ground
5SATA_RXN
6SATA_RXP
7Ground
X
ON
FF
LED
RST
PWR
OH/
NIC1
NIC2
FAN1
DIMM4
DIMM2B
JWD
DIMM3
DIMM1B
1-2:RST
2-3:NMI
JWD
DIMM2A
DIMM2
JSPK
JSPK:Buzzer/Speaker
DIMM1A
DIMM1
SPKR1
FAN2
A. I-SATA 0 (6Gb/s)
B. I-SATA 1 (6Gb/s)
C. I-SATA 2
D. I-SATA 3
E. I-SATA 4
F. I-SATA 5
FAN3
JPME2
J31
JPME1
U3
A
B
JS6
JS5
I-SATA5
I-SATA4
E
U4
J29
JL1
I-SATA1
I-SATA0
JS2
JS1
T-SGPIO2
T-SGPIO1
JL1:CHASSIS INTRUSION
C
FANA
JS3JS4
I-SATA2
I-SATA3
JWF1:DOM PWR
JWF1
LE3
LE2
LE4
5V
GND
GND
D
2-41
X9SCM-IIF/X9SCL-IIF Series User's Manual
Notes
2-42
Chapter 3: Troubleshooting
Chapter 3
Troubleshooting
3-1 Troubleshooting Procedures
Use the following procedures to troubleshoot your system. If you have followed all
of the procedures below and still need assistance, refer to the ‘Technical Support
Procedures’ and/or ‘Returning Merchandise for Service’ section(s) in this chapter.
Always disconnect the AC power cord before adding, changing or installing any
hardware components.
Before Power On
1. Make sure that the Standby PWR LED (LE2) is not on. (Note: If LE2 is on,
the onboard power is on. Be sure to unplug the power cable before installing
or removing the components.)
2. Make sure that there are no short circuits between the motherboard and
chassis.
3. Disconnect all ribbon/wire cables from the motherboard, including those for
the keyboard and mouse. Also, be sure to remove all add-on cards.
4. Install a CPU and heatsink (-be sure that it is fully seated) and then connect
the chassis speaker and the power LED to the motherboard. Check all jumper
settings as well.
No Power
1. Make sure that there are no short circuits between the motherboard and
chassis.
2. Make sure that all jumpers are set to their default positions.
3. Check if the 115V/230V switch on the power supply is properly set.
4. Turn the power switch on and off to test the system.
5. The battery on your motherboard may be old. Check to make sure that it still
supplies ~3VDC. If it does not, replace it with a new one.
3-1
X9SCM-IIF/X9SCL-IIF SeriesUser's Manual
No Video
1. If the power is on, but you have no video--in this case, you will need to re-
move all the add-on cards and cables rst.
2. Use the speaker to determine if any beep codes exist. (Refer to Appendix A
for details on beep codes.)
3. Remove all memory modules and turn on the system. (If the alarm is on,
check the specs of memory modules, reset the memory or try a different one.)
Memory Errors
1. Make sure that the DIMM modules are properly installed and fully seated in
the slots.
2. You should be using unbuffered ECC DDR3 (1.5V) 1333/1066 MHz memory
(recommended by the manufacturer). Also, it is recommended that you
use the memory modules of the same type and speed for all DIMMs in the
system. Do not use memory modules of different sizes, different speeds and
different types on the same motherboard.
3. Check for bad DIMM modules or slots by swapping modules between slots to
see if you can locate the faulty ones.
4. Check the switch of 115V/230V power supply.
Losing the System’s Setup Conguration
1. Please be sure to use a high quality power supply. A poor quality power sup-
ply may cause the system to lose CMOS setup information. Refer to Section
1-5 for details on recommended power supplies.
2. The battery on your motherboard may be old. Check to verify that it still sup-
plies ~3VDC. If it does not, replace it with a new one.
3. If the above steps do not x the Setup Conguration problem, contact your
vendor for repairs.
3-2
Chapter 3: Troubleshooting
3-2 Technical Support Procedures
Before contacting Technical Support, please make sure that you have followed all
the steps listed below. Also, Note that as a motherboard manufacturer, Supermicro
does not sell directly to end users, so it is best to rst check with your distributor or
reseller for troubleshooting services. They should know of any possible problem(s)
with the specic system conguration that was sold to you.
1. Please go through the ‘Troubleshooting Procedures’ and 'Frequently Asked
Question' (FAQ) sections in this chapter or see the FAQs on our website
(http://www.supermicro.com/support/faqs/) before contacting Technical Sup-
port.
2. BIOS upgrades can be downloaded from our website at (http://www.supermi-
cro.com/support/bios/).
Note: Not all BIOS can be ashed. Some cannot be ashed; it depends
on the boot block code of the BIOS.
3. If you've followed the instructions above to troubleshoot your system, and still
cannot resolve the problem, then contact Supermicro's technical support and
provide them with the following information:
• Motherboard model and PCB revision number
• BIOS release date/version (this can be seen on the initial display when your
system rst boots up)
•System conguration
•An example of a Technical Support form is on our website at (http://www.su-
permicro.com/support/contact.cfm).
4. Distributors: For immediate assistance, please have your account number
ready when placing a call to our technical support department. We can be
reached by e-mail at support@supermicro.com, by phone at: (408) 503-
8000, option 2, or by fax at (408)503-8019.
3-3
X9SCM-IIF/X9SCL-IIF SeriesUser's Manual
3-3 Frequently Asked Questions
Question: What type of memory does my motherboard support?
Answer: The X9SCM-IIF/X9SCL-IIF supports up to 32GB of unbuffered ECC DDR3
SDRAM (1.5V, 1333/1066/1600 MHz). See Section 2-3 for details on installing
memory.
Question: How do I update my BIOS?
Answer: It is recommended that you do not upgrade your BIOS if you are not
experiencing any problems with your system. Updated BIOS les are located on
our website at http://www.supermicro.com/support/bios/. Please check our BIOS
warning message and the information on how to update your BIOS on our web site.
Select your motherboard model and download the BIOS ROM le to your computer.
Also, check the current BIOS revision to make sure that it is newer than your BIOS
before downloading. After downloading the BIOS le (.zip archive), please unzip
the le into a bootable USB pen/thumb drive. To ash the BIOS, run the batch le
named "ami.bat" with the new BIOS ROM le from your bootable device or USB
pen/thumb drive. Use the following format:
F:\> ami.bat BIOS-ROM-lename.xxx <Enter>
Note: Always use the le named “ami.bat ” to update the BIOS, and inser t
a space between "ami.bat" and the lename. The BIOS -ROM -lename
will bear the motherboard name (i.e., X9SCM) and build version as the
extension. For example, "X9SCM0.115". When completed, your system
will automatically reboot.
When the BIOS ashing screen is completed, the system will reboot and
will show “Press F1 or F2”. At this point, you will need to load the BIOS
defaults. Press <F1> to go to the BIOS setup screen, and press <F9> to
load the default settings. Next, press <F10> to save and exit. The system
will then reboot.
Warning: Do not shut down or reset the system while updating the BIOS
to prevent possible system boot failure!
Note: The SPI BIOS chip installed on this motherboard is not removable.
To repair or replace a damaged BIOS chip, please send your motherboard
to RMA at Supermicro for service.
Question: I think my BIOS is corrupted. How can I recover my BIOS?
Answer: Please see Appendix C-BIOS Recovery for detailed instructions.
3-4
Chapter 3: Troubleshooting
Question: What's on the CD that came with my motherboard?
Answer: The supplied compact disc has quite a few drivers and programs that will
greatly enhance your system. We recommend that you review the CD and install
the software you need. Software on the CD include chipset drivers for Windows,
security programs, and audio drivers.
Question: Why do I get an error message “IASTOR.SYS read error” and "press F6
to install Intel RAID driver" when installing Windows on my motherboard?
Answer: To solve this issue, disable the IPMI jumper. Another solution is to use a
USB oppy drive instead of the onboard oppy drive. For the IPMI jumper location,
please check Chapter 1.
Question: What is the heatsink part number for my X9SCM-IIF/X9SCL-IIF moth-
erboard?
Answer: For the 1U passive heatsink, ask for SNK-P0046P (back plate is included).
For the 2U active heatsink, use SNK-P0046A4.
Question: Why can't I recover the BIOS even when I’ve followed the instructions
in the user’s manual for the motherboard?
Answer: Please disable the IPMI jumper and try it again. For the jumper location,
please check Chapter 1.
3-5
X9SCM-IIF/X9SCL-IIF SeriesUser's Manual
3-4 Battery Removal and Installation
Battery Removal
To remove the onboard battery, follow the steps below:
1. Power off your system and unplug your power cable.
2. Locate the onboard battery as shown below.
3. Using a tool such as a pen or a small screwdriver, push the battery lock out-
wards to unlock it. Once unlocked, the battery will pop out from the holder.
4. Remove the battery.
Battery
Lock
Battery
Battery Holder
Proper Battery Disposal
Warning! Please handle used batteries carefully. Do not damage the bat-
tery in any way; a damaged battery may release hazardous materials into
the environment. Do not discard a used battery in the garbage or a public
landll. Please comply with the regulations set up by your local hazardous
waste management agency to dispose of your used battery properly.
Battery Installation
1. To install an onboard battery, follow the steps 1& 2 above and continue
below:
2. Identify the battery's polarity. The positive (+) side should be facing up.
3. Insert the battery into the battery holder and push it down until you hear a
click to ensure that the battery is securely locked.
Warning: When replacing a battery, be sure to only replace it with the
same type.
1
This side up
3-6
2
Press down until
you hear a click.
Chapter 3: Troubleshooting
3-5 Returning Merchandise for Service
A receipt or copy of your invoice marked with the date of purchase is required
before any warranty service will be rendered. You can obtain service by calling
your vendor for a Returned Merchandise Authorization (RMA) number. For faster
service, you may also obtain RMA authorizations online (http://www.supermicro.
com/support/rma/). When you return the motherboard to the manufacturer, the
RMA number should be prominently displayed on the outside of the shipping
carton, and mailed prepaid or hand-carried. Shipping and handling charges will
be applied for all orders that must be mailed when service is complete.
This warranty only covers normal consumer use and does not cover damages
incurred in shipping or from failure due to the alteration, misuse, abuse or improper
maintenance of products.
During the warranty period, contact your distributor rst for any product prob-
lems.
3-7
X9SCM-IIF/X9SCL-IIF SeriesUser's Manual
Notes
3-8
Chapter 4: AMI BIOS
Chapter 4
BIOS
4-1 Introduction
This chapter describes the AMI BIOS Setup Utility for the X9SCM-IIF/X9SCL-IIF.
The AMI ROM BIOS is stored in a Flash EEPROM and can be easily updated. This
chapter describes the basic navigation of the AMI BIOS Setup Utility setup screens.
Note: For instructions on BIOS recovery, please refer to the instruction
guide posted at http://www.supermicro.com/support/manuals/.
Starting BIOS Setup Utility
To enter the AMI BIOS Setup Utility screens, press the <Delete> key while the
system is booting up.
Note: In most cases, the <Delete> key is used to invoke the AMI BIOS
setup screen. There are a few cases when other keys are used, such as
<F1>, <F2>, etc.
Each main BIOS menu option is described in this manual. The Main BIOS setup
menu screen has two main frames. The left frame displays all the options that can
be congured. Grayed-out options cannot be congured. Options in blue can be
congured by the user. The right frame displays the key legend. Above the key
legend is an area reserved for a text message. When an option is selected in the
left frame, it is highlighted in white. Often a text message will accompany it. (Note:
the AMI BIOS has default text messages built in. Supermicro retains the option to
include, omit, or change any of these text messages.)
The AMI BIOS Setup Utility uses a key-based navigation system called "hot keys".
Most of the AMI BIOS setup utility "hot keys" can be used at any time during the
setup navigation process. These keys include <F1>, <F10>, <Enter>, <ESC>, ar-
row keys, etc.
Note: Options printed in Bold are default settings.
How To Change the Conguration Data
The conguration data that determines the system parameters may be changed by
entering the AMI BIOS Setup utility. This Setup utility can be accessed by pressing
<Del> at the appropriate time during system boot.
4-1
X9SCM-IIF/X9SCL-IIF Series User's Manual
How to Start the Setup Utility
Normally, the only visible Power-On Self-Test (POST) routine is the memory test.
As the memory is being tested, press the <Delete> key to enter the main menu of
the AMI BIOS Setup Utility. From the main menu, you can access the other setup
screens. An AMI BIOS identication string is displayed at the left bottom corner of
the screen, below the copyright message.
Warning! Do not upgrade the BIOS unless your system has a BIOS-related
issue. Flashing the wrong BIOS can cause irreparable damage to the
system. In no event shall Supermicro be liable for direct, indirect, special,
incidental, or consequential damages arising from a BIOS update. If you
have to update the BIOS, do not shut down or reset the system while the
BIOS is updating. This is to avoid possible boot failure.
4-2 Main Setup
When you rst enter the AMI BIOS Setup Utility, you will enter the Main setup screen.
You can always return to the Main setup screen by selecting the Main tab on the
top of the screen. The Main BIOS Setup screen is shown below.
4-2
Chapter 4: AMI BIOS
System Overview: The following BIOS information will be displayed:
System Time/System Date
Use this option to change the system time and date. Highlight System Time or Sys-
tem Date using the arrow keys. Enter new values through the keyboard. Press the
<Tab> key or the arrow keys to move between elds. The date must be entered in
Day MM/DD/YY format. The time is entered in HH:MM:SS format. (Note: The time
is in the 24-hour format. For example, 5:30 P.M. appears as 17:30:00.)
Supermicro X9SCL-II/X9SCM-II
Version
Build Date
Processor
The AMI BIOS will automatically display the status of processor as shown below:
Processor
Speed
Physical Count
Logical Count
System Memory
This displays the size of memory available in the system:
Size
4-3
X9SCM-IIF/X9SCL-IIF Series User's Manual
4-3 Advanced Setup Congurations
Use the arrow keys to select Boot Setup and hit <Enter> to access the submenu
items:
BOOT Feature
Quiet Boot
This option allows the bootup screen options to be modied between POST mes-
sages or the OEM logo. Select Disabled to display the POST messages. Select
Enabled to display the OEM logo instead of the normal POST messages. The op-
tions are Enabled and Disabled.
AddOn ROM Display Mode
This sets the display mode for Option ROM. The options are Force BIOS and
Keep Current.
Bootup Num-Lock
This feature selects the Power-on state for Numlock key. The options are Off
and On.
Wait For 'F1' If Error
This forces the system to wait until the 'F1' key is pressed if an error occurs. The
options are Disabled and Enabled.
INT19 Trap Response
Interrupt 19 is the software interrupt that handles the boot disk function. When this
item is set to Enabled, the ROM BIOS of the host adaptors will "capture" Interrupt
4-4
Chapter 4: AMI BIOS
19 at boot and allow the drives that are attached to these host adaptors to function
as bootable disks. If this item is set to Disabled, the ROM BIOS of the host adap-
tors will not capture Interrupt 19, and the drives attached to these adaptors will not
function as bootable devices. The options are Enabled and Disabled.
Watch Dog Function
If enabled, the Watch Dog Timer will allow the system to reboot when it is inactive
for more than 5 minutes. The options are Enabled and Disabled.
Power Button Function
This feature controls how the system shuts down when the power button is pressed.
Select 4-Seconds Override to force the user to press and hold the Power Button for
4 seconds before the system turns off. Select Instant Off if you want the system to
instantly power off when the Power Button is pressed. The options are 4 Seconds
Override and Instant Off.
Restore on AC Power Loss
Use this feature to set the power state after a power outage. Select Power-Off for
the system power to remain off after a power loss. Select Power-On for the system
power to be turned on after a power loss. Select Last State to allow the system to
resume its last state before a power loss. The options are Power-On, Power-Off
and Last State.
DeepSx Power Policies
Select Enabled to enable Deep Sleep State power policies. The settings are En-
abled and Disabled.
Processor & Clock Options
Warning: Take Caution when changing the Advanced settings. An incorrect
value, a very high DRAM frequency or incorrect DRAM timing may cause
system to become unstable. When this occurs, revert to the default setting.
Intel ® Hyper Threading Technology
Set to Enabled to use the processor's Hyper Threading Technology feature. The
options are Enabled and Disabled.
Active Processor Cores
Set to Enabled to use a processor's Second Core and beyond. (Please refer to
Intel's web site for more information.) The options are All, 1, 2 and 3.
4-5
X9SCM-IIF/X9SCL-IIF Series User's Manual
Execute-Disable Bit Capability (Available when supported by the OS and
the CPU)
Set to Enabled to enable the Execute Disable Bit which will allow the processor
to designate areas in the system memory where an application code can execute
and where it cannot, thus preventing a worm or a virus from ooding illegal codes
to overwhelm the processor or damage the system during an attack. The default is
Enabled. (Refer to Intel and Microsoft Web Sites for more information.)
Intel® Virtualization Technology (Available when supported by the CPU)
Select Enabled to use the feature of Virtualization Technology to allow one plat-
form to run multiple operating systems and applications in independent partitions,
creating multiple "virtual" systems in one physical computer. The options are
Enabled and Disabled.
Note: If there is any change to this setting, you will need to power off and
restart the system for the change to take effect. Please refer to Intel’s
web site for detailed information.
Hardware Prefetcher (Available when supported by the CPU)
If set to Enabled, the hardware prefetcher will pre fetch streams of data and instruc-
tions from the main memory to the L2 cache in the forward or backward manner to
improve CPU performance. The options are Disabled and Enabled.
Adjacent Cache Line Prefetch (Available when supported by the CPU)
The CPU fetches the cache line for 64 bytes if this option is set to Disabled. The
CPU fetches both cache lines for 128 bytes as comprised if Enabled.
Intel® AES-NI
Set to Enabled to use the processor's Advanced Encryption Standard (AES) feature.
The options are Enabled and Disabled.
Power Technology
This feature determines what power-saving scheme the motherboard uses. The
options are Disabled, Energy Efcient and Custom. If Custom is selected, the
following options become available:
EIST
EIST (Enhanced Intel SpeedStep Technology) allows the system to automati-
cally adjust processor voltage and core frequency in an effort to reduce
power consumption and heat dissipation. Please refer to Intel’s web site
for detailed information. The options are Disabled and Enabled.
4-6
Chapter 4: AMI BIOS
CPU C3 Report, CPU C6 Report, CPU 7 Report
This BIOS feature enables or disables C3 (ACPI C2), C6 (ACPI C3), or C7
(ACPI C3) reporting to the operating system. The options are Disabled and
Enabled.
C1E Support
Select Enabled to use the "Enhanced Halt State" feature. C1E signicantly
reduces the CPU's power consumption by reducing the CPU's clock cycle
and voltage during a "Halt State." The options are Disabled and Enabled.
Turbo Boost Technology (Available if Intel® EIST
technology is Enabled)
Turbo Mode
This feature allows processor cores to run faster than marked frequency in
specic conditions. The options are Disabled and Enabled.
Long duration power limit - this is the processor power consumption limit
(in Watts) during a long duration time window.
Long duration maintained - this is the time in milliseconds where the Long
Duration Power Limit is maintained.
Short duration power limit - During Turbo Mode, the system may exceed
the processor's default power setting and exceed the Short Duration Power
limit. By increasing this value, the processor can provide better performance
for a short duration.
Chipset Conguration
WARNING: Setting the wrong values in the following sections may cause the system
to malfunction.
CPU Bridge Conguration
This item displays the current CPU Revision, Current CPU1 Memory Frequency,
Memory Type and Memory Reference Code Revision.
Memory Frequency
This feature allows the user to select the memory speed. Under normal condi-
tions, please set this to Auto. The options are Auto, Force DDR-800, Force
DDR-1067, Force DDR-1333, and Force DDR-1600.
4-7
X9SCM-IIF/X9SCL-IIF Series User's Manual
Integrated IO Conguration
This item displays the current IIO Revision.
Intel VT-d
Select Enabled to enable Intel's Virtualization Technology support for Direct I/O
VT-dby reporting the I/O device assignments to VMM through the DMAR ACPI
Tables. This feature offers fully-protected I/O resource-sharing across the Intel
platforms, providing the user with greater reliability, security and availability in
networking and data-sharing. The settings are Enabled and Disabled.
Active State Power Management
Set this item to the desired ASPM (Active State Power Management) level. The
options are Disabled, Auto and Force L0s.
PCIe Maximum Read Request
This feature selects the setting for the PCIE maximum Read Request size. The