Supermicro Super X6DHR-TG User Manual

®

X6DHR-TG

USER’S MANUAL

Revision 1.0

SUPER

The information in this User’s Manual has been carefully reviewed and is believed to be
accurate. The vendor assumes no responsibility for any inaccuracies that may be
contained in this document, makes no commitment to update or to keep current the
information in this manual, or to notify any person or organization of the updates.

Please Note: For the most up-to-date version of this manual, please
see our web site at www.supermicro.com.

SUPERMICRO COMPUTER reserves the right to make changes to the product described in
this manual at any time and without notice. This product, including software, if any, and
documentation may not, in whole or in part, be copied, photocopied, reproduced, translated
or reduced to any medium or machine without prior written consent.

IN NO EVENT WILL SUPERMICRO COMPUTER BE LIABLE FOR DIRECT, INDIRECT,
SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING FROM THE USE OR
INABILITY TO USE THIS PRODUCT OR DOCUMENTATION, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES. IN PARTICULAR, THE VENDOR SHALL NOT HAVE
LIABILITY FOR ANY HARDWARE, SOFTWARE, OR DATA STORED OR USED WITH THE
PRODUCT, INCLUDING THE COSTS OF REPAIRING, REPLACING, INTEGRATING,
INSTALLING OR RECOVERING SUCH HARDWARE, SOFTWARE, OR DATA.

Any disputes arising between manufacturer and customer shall be governed by the laws of
Santa Clara County in the State of California, USA. The State of California, County of
Santa Clara shall be the exclusive venue for the resolution of any such disputes.
Supermicro's total liability for all claims will not exceed the price paid for the hardware
product.

Unless you request and receive written permission from SUPER MICRO COMPUTER, you
may not copy any part of this document.

Information in this document is subject to change without notice. Other products and
companies referred to herein are trademarks or registered trademarks of their respective
companies or mark holders.

Copyright © 2004 by SUPER MICRO COMPUTER INC.
All rights reserved.

Printed in the United States of America

iii

Preface

Preface
About This Manual

This manual is written for system integrators, PC technicians and
knowledgeable PC users. It provides information for the installation and use
of the X6DHR-TG motherboard. The X6DHR-TG sup­ports single or dual Intel® Xeon EM64T (NoconaTM) processors at a 800
MHz front side bus. Based upon Intel's NetBurst microarchitecture, the Xeon
EM64T processor supports the IA-32 software and includes features found
in the XeonTM processor such as a Rapid Execution Engine, an Execution
Trace Cache, and Hyper Pipelined Technology, allowing the processor to
reach much higher core frequencies. The 800 MHz system bus is a quad­pumped bus running off a 200 MHz system clock making 6.4 GBper second
data transfer rates possible. Packaged in a 604-pin Flip Chip Micro Pin Grid
Array (FC-mPGA4) platform in a Zero Insertion Force(ZIF) socket (mPGA

604), the EM64T Processor (800 MHz) is ideal for high performance work­station and server environments with up to two processors on one system
bus. Please refer to the motherboard specifications pages on our web site
(http://www.supermicro.com/Product_page/product-m.htm) for updates on
supported processors. This product is intended to be professionally in­stalled.

Manual Organization

Chapter 1 begins with a checklist of what should be included in your

mainboard box, describes the features, specifications and performance of
the motherboard and provides detailed information about the chipset.

Chapter 2 begins with instructions on handling static-sensitive devices.
Read this chapter when you want to install the processor and DIMM memory
modules and when mounting the mainboard in the chassis. Also refer to
this chapter to connect the floppy and hard disk drives, SCSI drives, the IDE
interfaces, the parallel and serial ports, the keyboard and mouse, the power
supply and various control panel buttons and indicators.

If you encounter any problems, see Chapter 3, which describes trouble­shooting procedures for the video, the memory and the setup configuration
stored in CMOS. For quick reference, a general FAQ [Frequently Asked
Questions] section is provided.

Chapter 4 includes an introduction to BIOS and provides detailed informa­tion on running the CMOS Setup utility.

Appendix A gives information on BIOS POST messages.
Appendix B provides BIOS POST codes.
Appendix C give instructions on software drivers and the Widows OS

installations.

iv

Preface

About This Manual ...................................................................................................... ii i

Manual Organization ................................................................................................... ii i

Chapter 1: Introduction

1-1 Overview ......................................................................................................... 1-1

Checklist .................................................................................................... 1-1

Contacting Supermicro ............................................................................ 1-2

X6DHR-TG Image .................................................................... 1-3

X6DHR-TG Layout .................................................................. 1-4

X6DHR-TG Quick Reference.................................................. 1-5

Motherboard Features ............................................................................. 1-6

Intel E7520 (Lindenhurs) Chipset: System Block Diagram ............... 1-8

1-2 Chipset Overview........................................................................................... 1-9

1-3 Special Features........................................................................................... 1-10

BIOS Recovery ....................................................................................... 1-10

Recovery from AC Power Loss ......................................................... 1-10

1-4 PC Health Monitoring.................................................................................... 1-10

1- 5 ACPI Features ............................................................................................... 1-12

1-6 Power Supply ............................................................................................... 1-13

1- 7 Super I/O......................................................................................................... 1-14

Chapter 2: Installation

2-1 Static-Sensitive Devices ............................................................................... 2-1

Precautions............................................................................................... 2-1

Unpacking.................................................................................................. 2-1

2- 2 Xeon EM64T Processor and Heatsink Installation .................................... 2-2

2-3 Installing DIMMs............................................................................................... 2-6

2- 4 I/O Ports/Control Panel Connectors ............................................................. 2-7

2-5 Connecting Cables .......................................................................................... 2-9

ATX Power Connector............................................................................ 2-9

Processor Power Connector................................................................. 2-9

NMI Button ................................................................................................ 2-10

Power LED ............................................................................................... 2-10

HDD LED .................................................................................................. 2-11

NIC1/NIC2 LED ........................................................................................ 2-11

Overheat/Fan Fail LED .......................................................................... 2-12

Power Fail LED ....................................................................................... 2-12

Table of Contents

X6DHR-TG User's Manual

Table of Contents

v

Reset Button ........................................................................................... 2-13

Power Button ......................................................................................... 2-13

Chassis Intrusion ................................................................................... 2-14

Universal Serial Bus (USB0/1) ............................................................ 2-14

Extra Universal Serial Bus Headers (USB2/3) ................................. 2-15

Serial Ports ............................................................................................. 2-15

GLAN1/GLAN2 (Ethernet Ports) ...........................................................2-16

Fan Headers ........................................................................................... 2-16

SMB .......................................................................................................... 2-17

ATX PS/2 Keyboard and Mouse Ports ............................................... 2-17

Power LED/Speaker Header ................................................................ 2-18

Wake-On-Ring ......................................................................................... 2-18

Wake-On-LAN ......................................................................................... 2-19

Overheat LED ..........................................................................................2-19

Alarm Reset ............................................................................................. 2-20

SMB Power .............................................................................................. 2-20

Power Fail ................................................................................................ 2-21

2- 6 Jumper Settings ............................................................................................ 2-22

Explanation of Jumpers ........................................................................ 2-22

CMOS Clear............................................................................................. 2-22

GLAN Enable/Disable............................................................................. 2-23

VGA Enable/Disable .............................................................................. 2-23

Watch Dog Enable/Disable .................................................................... 2-24

3rd Power Supply Detect......................................................................2-24

PLLSEL Select ......................................................................................... 2-25

2-7 Onboard Indicators ...................................................................................... 2-26

GLAN LEDs.............................................................................................. 2-26

2- 8 Floppy/Hard Disk Drive and SCSI Connections....................................... 2-27

Floppy Connector ................................................................................... 2-27

IPMI ........................................................................................................... 2-28

IDE Connectors ...................................................................................... 2-28

Chapter 3: Troubleshooting

3-1 Troubleshooting Procedures ........................................................................ 3-1

Before Power On .................................................................................... 3-1

No Power .................................................................................................. 3-1

No Video ................................................................................................... 3-1

Memory Errors .......................................................................................... 3-2

Losing the System’s Setup Configuration ........................................... 3-2

vi

3-2 Technical Support Procedures .................................................................... 3-2

3-3 Frequently Asked Questions........................................................................ 3-3

3-4 Returning Merchandise for Service ............................................................ 3-4

Chapter 4: BIOS

4- 1 Introduction ....................................................................................................... 4-1

4- 2 Running Setup.................................................................................................. 4-2

4- 3 Main BIOS Setup.............................................................................................. 4-2

4-4 Advanced Setup.............................................................................................. 4-7

4-5 Security Setup ...............................................................................................4-18

4- 6 Boot Setup...................................................................................................... 4-20

4-7 Exit ................................................................................................................... 4-21

Appendices:

Appendix A: BIOS POST Messages ..................................................................... A-1

Appendix B: BIOS POST Codes .............................................................................B-1

Appendix C: Installing Software Drivers and Windows Operating System ...C-1

X6DHR-TG User's Manual

Chapter 1: Introduction

1-1

Introduction

Chapter 1

Introduction

1-1 Overview

Checklist

Congratulations on purchasing your computer motherboard from an ac­knowledged leader in the industry. Supermicro boards are designed with
the utmost attention to detail to provide you with the highest standards in
quality and performance.

Check that the following items have all been included with your mother­board. If anything listed here is damaged or missing, contact your retailer.

One (1) Supermicro Mainboard

One (1) ribbon cable for IDE devices

One (1) floppy ribbon cable

One (1) Supermicro CD or diskettes containing drivers and utilities

One (1) User's/BIOS Manual

1-2

Introduction

X6DHR-TG User's Manual

Contacting Supermicro

Headquarters

Address: SuperMicro Computer, Inc.

980 Rock Ave.

San Jose, CA 95131 U.S.A.
Tel: [phone]
Fax: [phone]
Email: [e-mail] (General Information)

[e-mail] (Technical Support)
Web Site: www.supermicro.com

Europe

Address: SuperMicro Computer B.V.

Het Sterrenbeeld 28, 5215 ML

's-Hertogenbosch, The Netherlands
Tel: [phone]
Fax: [phone]
Email: [e-mail] (General Information)

[e-mail] (Technical Support)

[e-mail] (Customer Support)

Asia-Pacific

Address: SuperMicro, Taiwan

4F, No. 232-1 Liancheng Road

Chung-Ho 235, Taipei Hsien, Taiwan, R.O.C.
Tel: [phone]
Fax: [phone]
Web Site: www.supermicro.com.tw
Technical Support:
Email: [e-mail]
Tel: [phone], ext.132 or 139

Chapter 1: Introduction

1-3

Introduction

Figure 1-1. X6DHR-TG Image

1-4

Introduction

X6DHR-TG User's Manual

Figure 1-2. SUPER X6DHR-TG Motherboard Layout

1. Jumpers not indicated are for test purposes only.

(not drawn to scale)

Notes:

2. " " indcates Pin 1.

3. Manufacturer Setting: Do not change the CPU FSB or memory size.

KB

DIMM 4B

Mouse

USB
0/1

C
O
M
1

DIMM 4A

DIMM 3B

DIMM 3A

DIMM 2B

DIMM 2A

DIMM 1B

DIMM 1A

GLAN1

GLAN2

VGA

Battery

JPG1

JPL1

RAGE­XL

GLAN
CTRL

PXH

PCI-X 133 MHz

PCI-X 100 MHz

E7520

(North Bridge)

ICH5R

(South
Bridge)

ZCR RAID

IPMI 2.0

IDE #1

IDE #2

Floppy

WOL

COM2

Fan3

USB2/3

JBT1

FP C

TR

L

FAN2

FAN1

20-Pin ATX PW

PW SMB

JL1

JWD

CPU1

CPU2

JOH1

JD1

J4F4

J4F5

PWR
Fail

SPKR

Bank1

Bank2

Bank3

Bank4

PCI-Ex8

PCI-Ex8

SATA

S I/O

Graphic
Memory

SMB

IPMB

COM2

BIOS

WOR

JS10

JPS1

SATAII

JWF2

JP18

JWF1

JP17

SATA0

SATA1

Fan5

Fan4

JP10

JP11

12V

8 Pin
PWR

12V

4 Pin
PWR

JS9

M

arvell

S

ATA#0-3

J3J4

Chapter 1: Introduction

1-5

Introduction

Jumper Description Default Setting

J4F4/J4F5 Memory Frequency Select (*Manufacturer Setting: Do not chage!)
JBT1 CMOS Clear See Chapter 2
JPG1 VGA Enable/Disable Pins 1-2 (Enabled)
JPL1 GLAN Enable/Disable Pins 1-2 (Enabled)
JP10 3rd PWR Supply Fail Detect Open (Disabled)
JWD Watch Dog Pins 1-2 (Reset)

Connector Description

ATX PWR Primary ATX 20-Pin Power Connector
12-V 8-Pin PWR (J1D1) 8-Pin CPU Power Connector (Required)
12-V 4-Pin PWR (J38) 4-Pin 12V Power Connector( Required)
COM/COM2 COM1/COM2 Serial Port Connectors
FAN #1-5 Onboard CPU Fan/Chassis Fan Headers
DIMM #1A-4B Memory (RAM) Slots
Floppy Drive Floppy Drive Connector
GLAN1/2 G-bit Ethernet Ports
IDE1/2 (J5/J6) IDE1/2 Hard Disk Drive Connectors
IPMI (J9) IPMI 2.0 Connector
KB/Mouse (J33, J34) PS/2 Keyboard (J34)/Mouse (J33)
PWR Fail (JP9) Power Fault Header
Power SMB (J32) Power System Mangement Bus (See Chapter 2)
SMB (J11) System Management Bus Header
JD1 PWR LED(Pins1-3), Speaker(Pins4-7) Header
JF1 Front Control Panel Connector
JL1 Chassis Intrusion Header
JOH1 Overheat LED
JP11 Alarm Rest Header (Defult: Off)
JS9 Marvell's SATA #0-#3
JWOL Wake-on-LAN Header
JWOR Wake-on-Ring Header
SATA0(J3)/SATA1(J4) Intel ICH5R Serial ATA Connectors
Video(LG5) Video Connector
USB 0/1(J16) Universal Serial Bus Ports
USB 2/3(JD2) Front Panel USB0/1 Headers

Quick Reference (X6DHR-TG)

(*Please refer to Chapter 2 for pin definitions and detailed
information.)

1-6

Introduction

X6DHR-TG User's Manual

Motherboard Features

CPU

• Single or dual Intel® 604-pin Xeon EM64T (NoconaTM) processors at a

800 MHz front side (system) bus speed.

*Notes: The CPU FSB is set at 800 MHz by the Manufacturer. Please do
not change the CPU FSB setting.

Memory

• Eight 184-pin DIMM sockets supporting up to 32 GB(*DDR-266)/16 GB

(*DDR-333) Registered ECC DDR-333/266 (PC2700/2100) SDRAM
(*Manufacturer Setting)

Notes: Memory is set via BIOS. Interleaved memory; requires memory
modules to be installed in pairs. See Section 2-3 for details.

Chipset

• Intel E7520 (Lindenhurst) chipset

Expansion Slots

• One PCI-X 133 MHz slot

• One PCI-X 100 MHz slot

• Two PCI-Express x8 slots

BIOS

• 8 Mb Phoenix® Flash ROM

• APM 1.2, DMI 2.1, PCI 2.2, ACPI 1.0, Plug and Play (PnP), SMBIOS 2.3

PC Health Monitoring

• Onboard voltage monitors for CPU cores, chipset voltage, Memory

Voltage, +3.3V,+5V, +12V, −12V, +3.3V and +5V standby

• Fan status monitor with firmware/software on/off control

• CPU/chassis temperature monitors

• Environmental temperature monitor and control

• CPU slow-down on temperature overheat

• CPU thermal trip support for processor protection, +5V standby alert

LED

• Power-up mode control for recovery from AC power loss

• Auto-switching voltage regulator for CPU core

• System overheat/Fan Fail LED and control

Chapter 1: Introduction

1-7

Introduction

• Chassis intrusion detection

• System resource alert (via Supero Doctor III)

ACPI Features (optional)

• Microsoft OnNow

• Slow blinking LED for suspend state indicator

• Main switch override mechanism

Onboard I/O

• 2025S ZCR support

• One IPMI 2.0

• One Intel 82546GB Gigabit Ethernet controllers

• 2 EIDE Ultra DMA/100 bus master interfaces

• 1 floppy port interface (up to 2.88 MB)

• 2 Fast UART 16550A compatible serial ports

• PS/2 mouse and PS/2 keyboard ports

• Up to 4 USB 2.0 (Universal Serial Bus) ports

• Up to 6 Serial ATA connectors (2: Intel ICH5R SATA, 4: Marvell SATA)

Other

• Internal/external modem ring-on

• Wake-on-LAN (WOL)

• Wake-on-Ring (WOR)

• Console redirection

CD/Diskette Utilities

• BIOS flash upgrade utility and device drivers

Dimensions

• ATX Ext. 12" x 13.05" (304.8 x 331.5 mm)

1-8

Introduction

X6DHR-TG User's Manual

Figure 1-9. Block Diagram of the E7520 Chipset

Note: This is a general block diagram. Please refer to the Motherboard

Features for details.

MCH

VRM

4_DDR266/333

ADDR

CTRL

DATA

EM64T NOCONA CPU#1

ADDR

CTRL

DATA

DATA

ADDR

CTRL

DIMMs

ICH5R

FWHLPC I/O

LPC BUS

HUB

BMC CON.

PCI BUS(32-BIT)

DIMMs

4_DDR266/333

USB

0,1,2,3

USB PORTS

VGA

KB.

SER.2

SER.1

H/W
MONITOR

FDD.

MS.

VRM

0, 1

SATA

SATA

UDMA-100

IDE

PRI/SEC

PCI EXP. B(X8)

SATA

Gbit LAN

ANVIK

SOCKET

ZCR

PXH#2

A

B

PCI EXP. A(X8)

SLOT--6

PCI-X BUS(100MHZ)

1_PCI-X133

PCI-X BUS(133MHZ)

1_PCI-X100

SLOT--7

266MB/s

4GB/s

6.4GB/s

6.4GB/s

PCI EXP. C(X8)

PCI EXP. B(X8)

PCI-E_(X8)

PCI-E_(X8)

B

C

A

A

B

Clock

4 Ports

EM64T NOCONA CPU#1

Chapter 1: Introduction

1-9

Introduction

1-2 Chipset Overview

Built upon the functionality and the capability of the Intel E7520
(Lindenhurst) chipset, the X6DHR-TG motherboard provides the perfor­mance and feature set required for dual processor-based servers, with
configuration options optimized for communications, presentation, storage,
computation or database applications. The Intel E7520 (Lindenhurst) chipset
consists of the following components: the E7520 (Lindenhurst) Memory
Controller Hub (MCH), the ICH5R Controller Hub (ICH), the Intel PCI-X Hub
(PXH).

The E7520 MCH supports single or dual Xeon EM64T (Nocona) processors
with Front Side Bus speeds of 800 MHz. Its memory controller provides
direct connection to two channels of registered DDR266, DDR333 with a
marched system bus address and data bandwidths of up to 6.4GB/s. The
E7520 also supports the new PCI Express high speed serial I/O interface
for superior I/O bandwidth. The MCH provides three configurable x8 PCI
Express interfaces which may alternatively be configured as two indepen­dent x4 PCI Express interfaces. These interfaces support connection of
the MCH to a variety of other bridges that are compliant with the PCI Ex­press Interface Specification, Rev. 1.0a, such as Anvik 2 GLAN Adaptor, H/
W RAID controllers and TCP/IP Off-load engines. The MCH interfaces with
the ICH5R I/O Controller Hub (ICH5R) via a dedicated Hub Interface support­ing a peak bandwidth of 266 MB/s using a x4 base clock of 66 MHz. The
PXH provides connection between a PCI Express interface and two inde­pendent PCI bus interfaces that can be configured for standard PCI -X 1.0
protocol.

ICH5R System Features

In addition to providing the I/O subsystem with access to the rest of the
system, the ICH5R I/O Controller Hub integrates many I/O functions.

The ICH5R I/O Controller Hub integrates: 2-channel Ultra ATA/100 Bus Mas­ter IDE Controller, two Serial ATA (SATA) Host w/RAID0, RAID1 support,
SMBus 2.0 Controller, LPC/Flash BIOS Interface, PCI 2.2 Interface and Sys­tem Management Controller.

1-10

Introduction

X6DHR-TG User's Manual

1-3 Special Features

BIOS Recovery

The BIOS Recovery function allows you to recover your BIOS image file if
the BIOS flashing procedure fails (see Section 3-3).

Recovery from AC Power Loss

BIOS provides a setting for you to determine how the system will respond
when AC power is lost and then restored to the system. You can choose
for the system to remain powered off (in which case you must hit the
power switch to turn it back on) or for it to automatically return to a power­on state. See the Power Lost Control setting in the Advanced BIOS Setup
section (Peripheral Device Configuration) to change this setting. The de­fault setting is Always On.

1-4 PC Health Monitoring

This section describes the PC health monitoring features of the SUPER
X6DHR-TG. All have an onboard System Hardware Monitor chip that sup­ports PC health monitoring.

Onboard Voltage Monitors for the CPU Cores, Chipset
Voltage, Memory Voltage +3.3V, +5V, +12V, -12V, +3.3V
Standby and +5V Standby

An onboard voltage monitor will scan these voltages continuously. Once a
voltage becomes unstable, a warning is given or an error message is sent
to the screen. Users can adjust the voltage thresholds to define the
sensitivity of the voltage monitor.

Fan Status Monitor with Firmware/Software On/Off Control

The PC health monitor can check the RPM status of the cooling fans. The
onboard CPU and chassis fans are controlled by the Thermal Management
via BIOS.

Chapter 1: Introduction

1-11

Introduction

Environmental Temperature Control

The thermal control sensor monitors the CPU temperature in real time and
will turn on the thermal control fan whenever the CPU temperature exceeds
a user-defined threshold. The overheat circuitry runs independently from
the CPU. It can continue to monitor for overheat conditions even when the
CPU is in sleep mode. Once it detects that the CPU temperature is too high,
it will automatically turn on the thermal control fan to prevent any overheat
damage to the CPU. The onboard chassis thermal circuitry can monitor the
overall system temperature and alert users when the chassis temperature
is too high.

CPU Overheat/Fan Fail LED and Control

This feature is available when the user enables the CPU overheat/Fan Fail
warning function in the BIOS. This allows the user to define an overheat
temperature. When this temperature is exceeded, both the overheat fan and
the warning LED are triggered.

Auto-Switching Voltage Regulator for the CPU Core

The auto-switching voltage regulator for the CPU core can support auto­sense voltage IDs. This will allow the regulator to run cooler and thus make
the system more stable.

1-12

Introduction

X6DHR-TG User's Manual

1-5 ACPI Features

ACPI stands for Advanced Configuration and Power Interface. The ACPI
specification defines a flexible and abstract hardware interface that pro­vides a standard way to integrate power management features throughout
a PC system, including its hardware, operating system and application soft­ware. This enables the system to automatically turn on and off peripherals
such as CD-ROMs, network cards, hard disk drives and printers. This also
includes consumer devices connected to the PC such as VCRs, TVs, tele­phones and stereos.

In addition to enabling operating system-directed power management, ACPI
provides a generic system event mechanism for Plug and Play and an oper­ating system-independent interface for configuration control. ACPI lever­ages the Plug and Play BIOS data structures while providing a processor
architecture-independent implementation that is compatible with Windows
Operating Systems.

Microsoft OnNow

The OnNow design initiative is a comprehensive, system-wide approach to
system and device power control. OnNow is a term for a PC that is always
on but appears to be off and responds immediately to user or other re­quests.

Slow Blinking LED for Suspend-State Indicator

When the CPU goes into a suspend state, the chassis power LED will start
blinking to indicate that the CPU is in suspend mode. When the user presses
any key, the CPU will wake-up and the LED will automatically stop blinking
and remain on.

Main Switch Override Mechanism

When an ATX power supply is used, the power button can function as a
system suspend button to make the system enter a SoftOff state. The
monitor will be suspended and the hard drive will spin down. Depressing
the power button again will cause the whole system to wake-up. During
the SoftOff state, the ATX power supply provides power to keep the re­quired circuitry in the system alive. In case the system malfunctions and

Chapter 1: Introduction

1-13

Introduction

you want to turn off the power, just depress and hold the power button for
4 seconds. This option can be set in the Power section of the BIOS Setup
routine.

External Modem Ring-On

Wake-up events can be triggered by a device such as the external modem
ringing when the system is in the SoftOff state. Note that external modem
ring-on can only be used with an ATX 2.01 (or above) compliant power
supply.

Wake-On-LAN (WOL)

Wake-On-LAN is defined as the ability of a management application to re­motely power up a computer that is powered off. Remote PC setup, up­dates and asset tracking can occur after hours and on weekends so that
daily LAN traffic is kept to a minimum and users are not interrupted. The
motherboard has a 3-pin header (WOL) to connect to the 3-pin header on a
Network Interface Card (NIC) that has WOL capability. Wake-On-LAN must
be enabled in BIOS. Note that Wake-On-LAN can only be used with an ATX

2.01 (or above) compliant power supply.

1-6 Power Supply

As with all computer products, a stable power source is necessary for
proper and reliable operation. It is even more important for processors that
have high CPU clock rates.

The SUPER X6DHR-TG accommodates ATX power supplies. Although most
power supplies generally meet the specifications required by the system,
some are inadequate. You should use one that will supply at least 400W of
power. It is also required that both +12V 4-pin power and 8-pin power
connectors be used for processor power consumption and for heavy load­ing configurations. Also your power supply must supply 1.5A for the Eth­ernet ports.

It is strongly recommended that you use a high quality power supply that
meets ATX power supply Specification 2.02 or above. It must also be SSI
compliant (info at http://www.ssiforum.org/). Additionally, in areas where
noisy power transmission is present, you may choose to install a line filter
to shield the computer from noise. It is recommended that you also install a

1-14

Introduction

X6DHR-TG User's Manual

power surge protector to help avoid problems caused by power surges.
(*Please refer to the next page for additional information.)

NOTES: 1. Auxiliary 12V power is required to support Intel Xeon
EM64T (Nocona) CPUs. Without this extra power, the CPU will
become unstable. See Section 2-5 for details on the power supply
cable connections.

2. Be sure to use the correct type of onboard CMOS battery as
specified by the Manufacturer. Do not install the CMOS battery up­side down to avoid possible explosion.

1-7 Super I/O

The disk drive adapter functions of the Super I/O chip include a floppy disk
drive controller that is compatible with industry standard 82077/765, a data
separator, write pre-compensation circuitry, decode logic, data rate selec­tion, a clock generator, drive interface control logic and interrupt and DMA
logic. The wide range of functions integrated onto the Super I/O greatly
reduces the number of components required for interfacing with floppy disk
drives. The Super I/O supports 360 K, 720 K, 1.2 M, 1.44 M or 2.88 M disk
drives and data transfer rates of 250 Kb/s, 500 Kb/s or 1 Mb/s. It also
provides two high-speed, 16550 compatible serial communication ports
(UARTs), one of which supports serial infrared communication. Each UART
includes a 16-byte send/receive FIFO, a programmable baud rate generator,
complete modem control capability and a processor interrupt system. Both
UARTs provide legacy speed with baud rate of up to 115.2 Kbps as well as
an advanced speed with baud rates of 250 K, 500 K, or 1 Mb/s, which
support higher speed modems.

The Super I/O supports one PC-compatible printer port (SPP), Bi-directional
Printer Port (BPP) , Enhanced Parallel Port (EPP) or Extended Capabilities
Port (ECP).

The Super I/O provides functions that comply with ACPI (Advanced Con­figuration and Power Interface), which includes support of legacy and ACPI
power management through an SMI or SCI function pin. It also features
auto power management to reduce power consumption.

The IRQs, DMAs and I/O space resources of the Super I/O can flexibly
adjust to meet ISA PnP requirements, which support ACPI and APM (Ad­vanced Power Management).

Chapter 2: Installation

2-1

Chapter 2

Installation

2-1 Static-Sensitive Devices

Electric-Static-Discharge (ESD) can damage electronic components. To pre­vent damage to your system board, it is important to handle it very carefully.
The following measures are generally sufficient to protect your equipment
from ESD.

Precautions

• Use a grounded wrist strap designed to prevent static discharge.

• Touch a grounded metal object before removing the board from the anti­static bag.

• Handle the board by its edges only; do not touch its components, periph­eral chips, memory modules or gold contacts.

• When handling chips or modules, avoid touching their pins.

• Put the motherboard and peripherals back into their antistatic bags when
not in use.

• For grounding purposes, make sure your computer chassis provides ex­cellent conductivity between the power supply, the case, the mounting
fasteners and the motherboard.

Warning: Please use the correct type of onboard CMOS battery as
specified by the Manufacturer. Do not install the CMOS battery up­side down to avoid possible explosion.

Unpacking

The motherboard is shipped in antistatic packaging to avoid static damage.
When unpacking the board, make sure the person handling it is static protected.

2-2

X6DHR-TG User's Manual

IMPORTANT: Always connect the power cord last and always remove it
before adding, removing or changing any hardware components. Make
sure that you install the processor into the CPU socket before you install
the CPU heat sink.

2-2 Xeon EM64T (Nocona) Processor and Heatsink
Installation

When handling the processor package, avoid placing direct
pressure on the label area of the fan. Also, do not place the
motherboard on a conductive surface, which can damage the
BIOS battery and prevent the system from booting up.

!

Socket lever

CPU Installation

1. Lift the lever on the CPU socket:

lift the lever completely as shown
on the picture on the right;
otherwise, you will damage the
CPU socket when power is
applied. (Install CPU1 first.)

CPU Retention
Bracket

CPU Socket

Mounting Holes

Xeon CPU

Heatsink

Chassis
back plane

Motherboard

CPU
Socket

Heatsink

* Note: CPU Retention Brackets are
pre-installed by the manufacturer.

CPU

Standoffs

Mounting
Holes

Chassis
back plane

Chapter 2: Installation

2-3

Heatsink

Heatsink Installation

1. Do not apply any thermal compound

to the heatsink or the CPU die-the
required amount has already been
applied.

2. Place the heatsink on top of the

CPU so that the four mounting holes
are aligned with those on the retention
mechanism.

3. Screw in two diagonal screws (ie

the #1 and the #2 screws) until just
snug (-do not fully tighten the screws
to avoid possible damage to the CPU.)

4. Finish the installation by fully

tightening all four screws.

Screw#1

Screw#2

Pin 1

2. Insert the CPU in the socket,

making sure that pin 1 of the CPU
aligns with pin 1 of the socket
(both corners are marked with a
triangle). When using only one
CPU, install it into CPU socket #1
(socket #2 is automatically disabled
if only one CPU is used).

3. Press the lever down until

you hear the *click* so you
can be sure that the CPU is
securely installed in the CPU
socket.

Socket lever in the
locking Position

Screw#1

*Note: Heatsinks are heavy; please
handle with care.

2-4

X6DHR-TG User's Manual

Figure 2-1. CPU Socket: Empty and with Processor Installed

Lever

Processor

(installed)

Triangle

Triangle

Empty socket

Warning! Make

sure you lift the
lever completely
when installing the
CPU. If the lever is
only partly raised,
damage to the
socket or CPU may
result.

!

1. Unscrew and remove the heatsink
screws from the motherboard in the
sequence as show in the second
picture on the right.

2. Hold the heatsink as show in the
picture on the right and gently wriggle
the heatsink to loosen it from the CPU.
(Do not use excessive force when
wriggling the heatsink!!)

3. Once the CPU is loosened from the
heatsink, remove the heatsink from the
CPU socket.

4. Clean the surface of the CPU and
the heatsink to get rid of the old
thermal grease. Reapply the proper
amount of thermal grease on the
surface before you re-install the CPU
and the heatsink.

To Un- Install Heatsink

Chapter 2: Installation

2-5

Mounting the Motherboard in the Chassis

All motherboards have standard mounting holes to fit different types of
chassis. Make sure that the locations of all the mounting holes for both the
motherboard and the chassis match. Although a chassis may have both
plastic and metal mounting fasteners, metal ones are highly recommended
because they ground the motherboard to the chassis. Make sure that the
metal standoffs click in or are screwed in tightly. Then use a screwdriver
to secure the motherboard onto the motherboard tray.

2-6

X6DHR-TG User's Manual

Figure 2-2. Installing and Removing DIMMs

To Install:

Insert module
vertically and
press down
until it snaps
into place.
Pay attention
to the
alignment
notch at the
bottom.

2-3 Installing DIMMs

Note: Check the Supermicro web site for recommended memory modules:

http://www.supermicro.com/support/resources

CAUTION

Exercise extreme care when installing or removing DIMM

modules to prevent any possible damage. Also note that the

memory is interleaved to improve performance (see step 1).

DIMM Installation (See Figure 2-2)

1. Insert the desired number of DIMMs into the memory slots, starting with
DIMM 1A. The memory scheme is interleaved, so you must install two
modules at a time, beginning with DIMM 1A, then DIMM 1B, and so on.

2. Insert each DIMM module vertically into its slot. Pay attention to the
notch along the bottom of the module to prevent inserting the DIMM
module incorrectly.

3. Gently press down on the DIMM module until it snaps into place in the
slot. Repeat for all modules (see step 1 above).

Memory Support

The X6DHR-TG supports up to 32/16 GB of Registered DDR-333/266
(PC2700/2100) memory (recommended by the Manufacturer). All mother­boards were designed to support 4 GB modules in each slot, but has only
been verified for up to 2.0 GB modules.

Chapter 2: Installation

2-7

To Remove:

Use your thumbs to gently push near the edge of both ends of
the module. This should release it from the slot.

2-4 I/OPorts/Control Panel Connectors

The I/O ports are color coded in conformance with the PC 99 specification.
See Figure 2-3 below for the colors and locations of the various I/O ports.

Figure 2-3. I/O Port Locations and Definitions

Mouse
(Purple)

Keyboard
(Turquoise)

GLAN1

COM Port1

GLAN2

USB0/1

Video

2-8

X6DHR-TG User's Manual

Front Control Panel

JF1 contains header pins for various buttons and indicators that are nor­mally located on a control panel at the front of the chassis. These connec­tors are designed specifically for use with Supermicro server chassis. See
Figure 2-4 for the descriptions of the various control panel buttons and LED
indicators. Refer to the following section for descriptions and pin defini­tions.

Figure 2-4. JF1 Header Pins

Power Button

Overheat LED

1

NIC1 LED

Reset Button

2

Power Fail LED

HDD LE D

Power LED

Reset

Pwr

Vcc

Vcc

Vcc

Vcc

Ground

Ground

1920

Vcc

X

Ground

NMI

X

NIC2 LED

Vcc

Chapter 2: Installation

2-9

2-5 Connecting Cables

ATX Power Connector

The primary power supply connec­tor on the X6DHR-TG meets the
SSI (Superset ATX) 20-pin speci­fication. You must also connect
the +12V 4-pin (J38) power con­nector to your power supply. Re­fer to the table below right for the
J38 4-Pin (12V) connector.

Pins

1 thru 4
5 thru 8

Definition

Ground

+12v

8-Pin +12v Power Supply

Connector (J1D1)

Processor Power
Connectors

In addition to the Primary ATX
power connector (above) and the
12V 4-pin connector, there is a
12V 8-pin processor power con­nector on the motherboard. The
12V 8-pin connector at J1D1 must
also be connected to your power
supply for CPU consumption. See
the table on the right for pin defini­tions.

Pin # Definition
11 +3.3V
12 -12V
13 COM
14 PS_ON
15 COM
16 COM
17 COM
18 -5V
19 +5V
20 +5V

Pin # Definition
1 +3.3V
2 +3.3V
3COM
4+5V
5COM
6+5V
7COM
8PW-OK
95VSB
10 +12V

ATX 20-pin Power Connector

Pin Definitions (J1B1)

Pins #

1 & 2
3 & 4

Definition

Ground

+12 V

+12V 4-pin
Connector

(J38)

Required Connection

Required Connection

8-Pin PWR

20-Pin
ATX PWR

4-Pin PWR

K

B

DIMM 4B

M
o

u
s
e

USB
0/1

COM1

DIMM 4A

DIMM 3B

DIMM 3A

DIMM 2B

DIMM 2A

DIMM 1B

DIMM 1A

G

L

A

N

1

G

L

A

N

2

V

G

A

B

a

tte

ry

J

P

G

1

J

P

L

1

R

A

G

E

-

X

L

G

L

A

N

C

T

R

L

P

X

H

P

C

I-X

1

3

3

M

H

z

P

C

I-X

1

0

0

M

H

z

E

7

5

2

0

(N

o

rth

B

rid

g

e

)

IC

H

5

R

(S

o

u

th

B

rid

g

e

)

Z

C

R

R

A

ID

IPMI 2.0

IDE #1

IDE #2

Floppy

WOL

COM2

F

a

n

3

USB2/3

JBT1

F

P

C

T

R

L

FAN2

FAN1

20-Pin ATX PW

PW SMB

JL1

JWD

CPU1

CPU2

JOH1

JD1

J

4

F

4

J

4

F

5

PWR
Fail

S

P

K

R

Bank1

Bank2

Bank3

Bank4

P

C

I-E

x

8

P

C

I-E

x

8

S

A

T

A

S

I/O

G

ra

p

h

ic

M

e

m

o

ry

S

M

B

IP

M

B

C

O

M

2

BIOS

WOR

JS10

JPS1

SATAII

JWF2

JP18

JWF1

JP17

SATA0

SATA1

Fan5

Fan4

JP10

JP11

12V

8 Pin
PWR

12V

4 Pin
PWR

JS9

M

a

rv

e

ll

S

A

T

A

#

0

-3

J3J4

2-10

X6DHR-TG User's Manual

Power Button

Overheat LED

1

NIC1 LED

Reset Button

2

Power Fail LED

HDD LED

Power LED

Reset

Pwr

Vcc

Vcc

Vcc

Vcc

Ground

Ground

1920

Vcc

X

Ground

NMI

X

NIC2 LED

Vcc

K

B

DIMM 4B

M
o

u
s
e

USB
0/1

COM1

DIMM 4A

DIMM 3B

DIMM 3A

DIMM 2B

DIMM 2A

DIMM 1B

DIMM 1A

G

L

A

N

1

G

L

A

N

2

V

G

A

B

a

tte

ry

J

P

G

1

J

P

L

1

R

A

G

E

-

X

L

G

L

A

N

C

T

R

L

P

X

H

P

C

I-X

1

3

3

M

H

z

P

C

I-X

1

0

0

M

H

z

E

7

5

2

0

(N

o

rth

B

rid

g

e

)

IC

H

5

R

(S

o

u

th

B

rid

g

e

)

Z

C

R

R

A

ID

IPMI 2.0

IDE #1

IDE #2

Floppy

WOL

C

O

M

2

Fan3

USB2/3

JBT1

F

P

C

T

R

L

FAN2

FAN1

20-Pin ATX PW

PW SMB

JL1

JWD

CPU1

CPU2

JOH1

JD1

J

4

F

4

J

4

F

5

PWR
Fail

S

P

K

R

Bank1

Bank2

Bank3

Bank4

P

C

I-E

x

8

P

C

I-E

x

8

S

A

T

A

S

I/O

G

ra

p

h

ic

M

e

m

o

ry

S

M

B

IP

M

B

C

O

M

2

BIOS

WOR

JS10

JPS1

SATAII

JWF2

JP18

JWF1

JP17

SATA0

SATA1

Fan5

Fan4

JP10

JP11

12V

8 Pin
PW

R

12V

4 Pin
PW

R

JS9

M

a

rv

e

ll

S

A

T

A

#

0

-3

J3J4

Power LED

The Power LED connection is lo­cated on pins 15 and 16 of JF1.
Refer to the table on the right for
pin definitions.

NMI Button

The non-maskable interrupt button
header is located on pins 19 and
20 of JF1. Refer to the table on
the right for pin definitions.

Pin

Number

19
20

Definition

Control
Ground

NMI Button Pin

Definitions (JF1)

Pin

Number

15
16

Definition

Vcc

Control

PWR_LED Pin Definitions

(JF1)

NMI

PWR LED