TYAN S5620 User Manual

1

S5620

Version 1.0

Copyright

Copyright © 2014 MiTAC International Corporation. All rights reserved. No part of
this manual may be reproduced or translated without prior written consent from
MiTAC International Corporation.

Trademark

All registered and unregistered trademarks and company names contained in this
manual are property of their respective owners including, but not limited to the
following.

TYAN® is a trademark of MiTAC International Corporation.
Intel® is a trademark of Intel® Corporation.
AMI, AMI BIOS are trademarks of AMI Technologies.
Microsoft®, Windows® are trademarks of Microsoft Corporation.
Winbond® is a trademark of Winbond Electronics Corporation.

Notice

Information contained in this document is furnished by MiTAC International
Corporation and has been reviewed for accuracy and reliability prior to printing.
MiTAC assumes no liability whatsoever, and disclaims any express or implied
warranty, relating to sale and/or use of TYAN® products including liability or
warranties relating to fitness for a particular purpose or merchantability. MiTAC
retains the right to make changes to product descriptions and/or specifications at
any time, without notice. In no event will MiTAC be held liable for any direct or
indirect, incidental or consequential damage, loss of use, loss of data or other
malady resulting from errors or inaccuracies of information contained in this
document.

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Contents

S5620 ............................................................................................................ 1

Before you begin… .................................................................................... 3

Chapter 1: Instruction ................................................................................ 4

1.1 Congratulations ................................................................................. 4

1.2 Hardware Specifications .................................................................... 4

1.3 Software Specifications ..................................................................... 7

Chapter 2: Board Installation ..................................................................... 8

2.1 Board Image ...................................................................................... 9

2.2 Block Diagram ................................................................................. 10

2.3 Motherboard Mechanical Drawing ................................................... 11

2.4 Board Parts, Jumpers and Connectors ........................................... 12

2.5 Installing the Processor and Heatsink ............................................. 28

2.6 Thermal Interface Material............................................................... 33

2.7 Tips on Installing Motherboard in Chassis ...................................... 34

2.8 Installing the Memory ...................................................................... 36

2.9 Attaching Drive Cables .................................................................... 40

2.10 Installing Add-In Cards .................................................................. 41

2.11 Connecting External Devices ........................................................ 42

2.12 Installing the Power Supply ........................................................... 43

2.13 Finishing Up ................................................................................... 44

Chapter 3: BIOS Setup ............................................................................. 45

3.1 About the BIOS ................................................................................ 45

3.2 Main Menu ....................................................................................... 47

3.3 Advanced Menu ............................................................................... 48

3.4 Intel RCSetup Menu ........................................................................ 77

3.5 Server Management ...................................................................... 103

3.6 Security .......................................................................................... 106

3.7 Boot ............................................................................................... 112

3.8 Save & Exit .................................................................................... 114

Chapter 4: Diagnostics ........................................................................... 116

4.1 Flash Utility .................................................................................... 116

4.2 AMIBIOS Post Code (Aptio) .......................................................... 117

Appendix I: Fan and Temp Sensors ..................................................... 124

Glossary ................................................................................................... 129

Technical Support .................................................................................. 135

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Before you begin…

1 x S5620 Motherboard

2 x SATA Single Cable

1 x Rear IO shielding

1 x S5620 Quick Installation Guide

1 x TYAN® Driver CD

Check the box contents!

The retail motherboard package should contain the following:

IMPORTANT NOTE:

Sales samples may not come with any of the accessories listed above.
If you have ordered a sales sample and you are missing any of the above items,
please contact your sales representative to help order accessories.

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4

Chapter 1: Instruction

TYAN S5620 (S5620WGM4NR)

Processor

Supported CPU
Series

Intel Xeon Processor E5-2600/E5-1600 v3 series
processors

Socket Type / Q'ty

LGA2011 / (1)

Thermal Design
Power (TDP)
wattage

Max up to 160W

Chipset

PCH

Intel C612

Memory

Supported DIMM
Qty

(8) DIMM slots

DIMM Type / Speed

RDIMM DDR4 2133/1866/1600 / LRDIMM DDR4
2133/1600 / LRDIMM 3DS DDR4 2133/1600

Capacity

Up to 256GB RDIMM/ 512GB LRDIMM/ 1,024GB
LRDIMM 3DS *Follow latest Intel DDR4 Memory POR

Memory channel

4 Channels per CPU

Memory voltage

1.2V

Expansion
Slots

PCI-E

(1) PCI-E Gen3 x16 slot_6

Note:

(1) PCI-E Gen3 x8 OCP for Mezz Card

Recommended
TYAN OCP Card

M7062-B811-1T, PCI-E Gen3 x8, Broadcom 10GbE
Mezz Card / M7062-B810-2T, PCI-E Gen3 x8,
Broadcom 10GbE Mezz Card / M7076-X540-2T, PCI-E

1.1 Congratulations

You have purchased the powerful TYAN® S5620 motherboard, based on the Intel®
C612 Wellsburg chipset. The S5620 is designed to support single Intel® Xeon E5­2600/1600 v3 (Haswell-EP) Series processors, and up to 32GB RDIMM, 64GB

LRDIMM and 128GB LRDIMM 3DS* DDR4 memory for each DIMM slot.

Leveraging advanced technology from Intel®, the S5620 is capable of offering
scalable 32 and 64-bit computing, high-bandwidth memory design, and lightning­fast PCI-E bus implementation.

The S5620 not only empowers you in today‟s demanding IT environment but also
offers a smooth path for future application upgradeability. All of these rich feature
sets provide the S5620 with the power and flexibility to meet demanding
requirements for today‟s IT environments.

Remember to visit the TYAN® website at http://www.tyan.com. There you can find
all the information on all TYAN® products as well as all the supporting documentation,
FAQs, Drivers and BIOS upgrades.

1.2 Hardware Specifications

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Gen3 x8, Intel 10GbE Mezz Card / M7076-I350, PCI-E
Gen3 x8, Intel (2)GbE Mezz Card / M7062-I599-1T,
PCI-E Gen3 x8, Intel 10GbE Mezz Card / M7062-I599­2T, PCI-E Gen3 x8, Intel 10GbE Mezz Card

LAN

Port Q'ty

Total (4) ports, (1) port shared with IPMI

Controller

Intel I350-AM2 / Intel I210

Storage

SAS
Connector

(2) Mini-SAS connectors (totally support 8 ports)

Controller

LSI SAS2308

Speed

6.0 Gb/s

RAID

RAID 0/1/1E/10 (LSI Integrated RAID)

SATA
Connector

(1) Mini-SAS (4-ports) + (2) SATA (totally support 6
ports)

Controller

Intel C612

Speed

6.0 Gb/s

RAID

RAID 0/1/10/5 (Intel RST)

SSATA
Connector

(4) SSATA + SGPIO2

Controller

Intel C612

Speed

6.0 Gb/s

RAID

RAID 0/1/10/5 (Intel RST)

Graphic

Connector type

D-Sub 15-pin

Resolution

Up to 1920x1200

Chipset

Aspeed AST2400

Input /Output

USB

(4) USB2.0 ports (2 at rear, 2 via cable) / (5) USB3.0
ports (2 at rear, 2 via cable, Type-A)

COM

(2) ports (1 at rear, 1 via cable)

SAS

(2) Mini-SAS (4-in-1) connectors

VGA

(1) D-Sub 15-pin VGA port

RJ-45

Total (4) GbE ports, (1) shared with IPMI

Power

SSI 24-pin + 8-pin power connectors

Front Panel

(1) 2x12-pin SSI front panel header

SATA

(6) SATA-III + (4) SATA ports by (1) mini-SAS
connector

System
Monitoring

Chipset

Aspeed AST2400

Voltage

Monitors voltage for CPU, memory, chipset & power
supply

Temperature

Monitors temperature for CPU & memory & system
environment

LED

Over temperature warning indicator / Fan & PSU fail
LED indicator

Others

Watchdog timer support

Server
Management

Onboard Chipset

Onboard Aspeed AST2400

AST2400 IPMI
Feature

IPMI 2.0 compliant baseboard management controller
(BMC) / Supports storage over IP and remote platform­flash / USB 2.0 virtual hub

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AST2400 iKVM
Feature

24-bit high quality video compression / 10/100 Mb/s
MAC interface

BIOS

Brand / ROM size

AMI / 16MB

Feature

User-configurable H/W monitoring / SMBIOS

2.7/PnP/Wake on LAN / PXE boot support / ACPI

3.0/ACPI sleeping states S4,S5

Physical
Dimension

Form Factor

ATX

Board Dimension

12"x9.6" (305x243.8mm)

Operating
System

OS supported list

Please refer to our Intel OS supported list.

Regulation

FCC (DoC)

Class A

CE (DoC)

Yes

Operating
Environment

Operating Temp.

10° C ~ 35° C (50° F~ 95° F)

Non-operating
Temp.

- 40° C ~ 70° C (-40° F ~ 158° F)

In/Non-operating
Humidity

90%, non-condensing at 35° C

RoHS

RoHS 6/6 Compliant

Yes

Package
Contains

Motherboard

(1) S5620 Motherboard

Manual

(1) Quick Installation Guide

Installation CD

(1) TYAN installation CD

S5620WGMNR

S5620WGM4NR

S5620WGM2NR

S5620GM2NR

Intel i350 AM2
chipset

NO

Yes

NO

NO

BMC

AST2400

AST2400

AST2400

AST2400

I210 chipset

1 2 2

2

LAN Port#3 /
LAN Port#4

NO

Yes

NO

NO

USB2.0x2 /
LAN Port#2

NO

Yes

Yes

Yes

External Mini
SAS HD
connector#1/#2

NO

Yes

NO

NO

VGA

Yes

Yes

Yes

Yes

COM

Yes

Yes

Yes

Yes

USB3.0x2 /LAN
Port#1

Yes

Yes

Yes

Yes

LSI2308 SAS

Yes

Yes

Yes

NO

S5620 SKU Comparison Table

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1.3 Software Specifications

For the latest OS (operation system) support, please visit the Tyan‟s Web site for
information.

Remember to visit our Web site at http://www.tyan.com for the latest AST2400
User‟s Guide.

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Chapter 2: Board Installation

Caution!

1. To avoid damaging the motherboard and associated

components, do not use torque force greater than

7kgf/cm (6.09 lb/in) on each mounting screw for

motherboard installation.

2. Do not apply power to the board if it has been
damaged.

You are now ready to install your motherboard.

How to install our products right… the first time

The first thing you should do is read this user‟s manual. It contains important
information that will make configuration and setup much easier. Here are some
precautions you should take when installing your motherboard:

(1) Ground yourself properly before removing your motherboard from the

antistatic bag. Unplug the power from your computer power supply and
then touch a safely grounded object to release static charge (i.e. power
supply case). For the safest conditions, MiTAC recommends wearing a
static safety wrist strap.

(2) Hold the motherboard by its edges and do not touch the bottom of the

board, or flex the board in any way.

(3) Avoid touching the motherboard components, IC chips, connectors,

memory modules, and leads.

(4) Place the motherboard on a grounded antistatic surface or on the antistatic

bag that the board was shipped in.

(5) Inspect the board for damage.

The following pages include details on how to install your motherboard into your
chassis, as well as installing the processor, memory, disk drives and cables.

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2.1 Board Image

S5620

This picture is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above picture.

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2.2 Block Diagram

S5620 Block Diagram

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2.3 Motherboard Mechanical Drawing

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2.4 Board Parts, Jumpers and Connectors

This diagram is representative of the latest board revision available at the time of
publishing. The board you receive may not look exactly like the above diagram. The
DIMM slot numbers shown above can be used as a reference when reviewing the
DIMM population guidelines shown later in the manual. For the latest board revision,
please visit our web site at http://www.tyan.com.

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Connectors

1. Rear IO Power Button

21. USB2.0 Connector(USB2_2)

2. VGA Port / COM Port (COM1)

22. USB3.0 Connector(USB3_2)

3. Dual LAN(LAN Port #3/LAN Port #4)

23. SSATA 3.0

Connector(SSATA3~SSATA0)

4. PSU Alert LED

24. SATA 3.0 Connector(SATA5)

5. ID Button

25. SGPIO Header(SGPIO2,SSATA0-3)

6. USB2.0 ports and LAN Port #2

26. SATA 3.0 Connector(SATA4)

7. PCIE_Header2(from CPU0)

27. Front Panel Header(FPIO1)

8. USB3.0 ports and LAN Port #1(IPMI)

28. 4-pin Fan Connector (SYS_FAN4)

9. PCIE_Header1(from CPU0)

29. Reset Button

10. ID LED

30. 4 in 1 Mini SAS Connector

(SATA0-3)

11. 4-pin Fan Connector (SYS_FAN6)

31. 4 in 1 Mini SAS Connector(SAS4-7)

12.HDD Active LED

32. 4 in 1 Mini SAS Connector(SAS0-3)

13.TYAN Module Header(DBG-HD1)

33. 4-pin Fan Connector(SYS_FAN3)

14.SAS Active LED

34. 4-pin Fan Connector(SYS_FAN2)

15.BMC Heart Beat LED

35. 4-pin Fan Connector(CPU_FAN)

16.IPMI LED

36. 8-pin Power Connector(PW2)

17. Front Fan Connector(FAN_HDR1)

37. 4-pin Fan Connector (SYS_FAN1)

18. COM Header (COM2)

38. PSMI Connector(PSMI1)

19. IPMB Connector (IPMB1)

39.24-pin Power Connector(PW1)

20. TYPE-A USB 3.0 Connector
(TYPEA_USB3)

40. 4-pin Fan Connector (SYS_FAN5)

Headers/Jumpers

a. Buzzer Disable Jumper (4PHD_12)

g. PSU Alert Enable Jumper (3PHD_10)

b. Flash Security Override Jumper(3PHD_8)

h. i350_LAN0_ACTIVE LED (2PHD_3)

c. ME Recovery Mode Jumper(3PHD_4)

i. i350_LAN1_ACTIVE LED (2PHD_4)

d. Reset Select Jumper(3PHD_1)

j. ID_LED Button Header(2PHD_2)

f. ID_LED Button Header (2PHD_2)

k. Chassis Intrusion Header(2PHD_1)

PCIE Slots

Memory Slots

A. PCI-E x8 OCP slot for OCP card

C. DIMM C0/C1

B. PCI-E x16 slot #6 (CPU0),support

FH/FL card

D. DIMM D0/D1

E. DIMM B0/B1

F. DIMM A0/A1

Motherboard Components

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SYS_FAN1

CPU_FAN

SYS_FAN2

SYS_FAN3

SYS_FAN5

SYS_FAN6

COM2

SYS_FAN4

SSATA3/SSATA2/SSATA1/SSATA0

SATA4

SATA5

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SYS_FAN1/2/3/4/5/6/CPU_FAN: 4-Pin FAN Connector

Pin 1 2 3 4

Signal

GND

+12V

FAN_TACH

FAN_PWM

Use this header to connect the cooling fan to your motherboard to keep the
system stable and reliable.

Note: A 4-pin fan is required for fan speed control.

Signal

Pin

Pin

Signal

DCD

1

2

DSR

SIN

3

4

RTS

SOUT

5

6

CTS

DTR

7

8

RI

GND

9

10

KEY

Signal

Pin

Pin

Signal

PWRLED+

1

2

V3P3_AUX

KEY

3

4

ID_LED+

PWRLED-

5

6

ID_LED-

HDDLED+

7

8

HWM_FAULT_LED-

HDDLED-

9

10

SYS_FAULT_LED-

PWR_SW#

11

12

LAN1_ACTLE+

GND

13

14

LAN1_ACTLED-

RST_SW#

15

16

SMBDATA

GND

17

18

SMBCLK

FP_IDLED_BTN_N

19

20

INTRUSION#

FPIO_TEMP_IN

21

22

LAN2_ACTLED+

NMI_SW#

23

24

LAN2_ACTLED-

7

1

1

GND

Connects to the Serial ATA ready
drives via the Serial ATA cable.

2

TXP 3 TXN

4

GND

5

RXN 6 RXP

7

GND

7

GND

COM2: COM Header

FPIO: Front Panel Connector

SATA4/SATA5: SATA3.0 Connector(Blue)
SSATA0/1/2/3: Second SATA3.0 Connector(Black)

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IPMB1

USB2_2

PSIMI1

SGPIO2

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USB2_2: Front USB2.0 Header

Signal

Pin

Pin

Signal

+5V

1

2

+5V

USB DATA1-

3

4

USB DATA2-

USBDATA1+

5

6

USB DATA2+

GND

7

8

GND

KEY

9

10

GND

Pin 1 2 3 4

5

Signal

SMB_CLK

SMB_DAT

SMB_ALERT#

GND

V3P3

Signal

Pin

Pin

Signal

SCL

1

2

NC

SDA

3

4

SSDATA OUT-

GND

5

6

SSLOAD

KEY

7

8

SSCLOCK

P3V3_AUX

9

10

HD_ERROR_LED

NOTE: SGPIO2 is responsible for SSATA 0~3

Signal

Pin

Pin

Signal

BMC_SMB_DATA

1

2

GND

BMC_SMB_CLK

3

4

NC

PSIMI1: PSMI Connector

SGPIO2: SSATA SGPIO Header

IPMB1: IPMB Connector

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USB3_2

TYPEA_USB3

FAN_HDR1

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USB3_2: Front USB3.0 Header

Signal

Pin

Pin

Signal

+5V

1

2

P0_RX_N

P0_RX_P

3

4

GND

P0_TX_N

5

6

P0_TX_P

GND

7

8

P0_N

P0_P

9

10

OC_N

P1_P

11

12

P1_N

GND

13

14

P1_TX_P

P1_TX_N

15

16

GND

P1_RX_P

17

18

P1_RX_N

+5V

19

20

Key

Signal

Pin

Pin

Signal

+5V

1

2

USB2.0_DATA_N

USB2.0_DATA_P

3

4

GND

USB3.0_RX_N

5

6

USB3.0_RX_P

GND

7

8

USB3.0_TX_N

USB3.0_TX_P

9

Signal

Pin

Pin

Signal

TACH1

1

2

TACH6

TACH2

3

4

TACH7

TACH3

5

6

TACH8

TACH4

7

8

TACH9

TACH5

9

10

TACH10

GND

11

12

KEY

PWM2

13

14

PWM1

TACH11

15

16

SMB_DATA

TACH12

17

18

SMB_CLK

VCC3_AUX

19

20

PWM3

TYPEA_USB3: Vertical (Type_A) USB3.0 Connector

FAN_HDR1: Front Fan Connector (Reserved for Barebone)

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Caution:

The jumpers are only using for engineering debug. We don‟t
suggest customers change the jumpers‟ position, which may
cause unable to boot device.

DBG_HD1

3PHD_4

3PHD_8

2PHD_2/2PHD_1

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DBG_HD1: TYAN Module Header

Signal

Pin

Pin

Signal

P3V3

1

2

FRAME_N

LAD0

3

4

KEY

LAD1

5

6

PLT_RST_N

LAD2

7

8

GND

LAD3

9

10

CLK_33M

DBG_SERIRQ

11

12

GND

DBG_PRES_N

13

14

VCC3_AUX

ADDR_MB

15

16

PCH_PP_EN

Open

Short (Default)

Pin 1 2

Signal

INTRUDER#

GND

Open: Use this header to trigger the system chassis
intrusion alarm.
Short: Use this header to disable the system chassis
intrusion alarm.

Pin

1

2

Signal

FP_IDLED_BTN_N

GND

Pin

1 2 3

Signal

NC

FM_ME_RCVR_N

GND

Pin 1-2 Closed: Normal Mode (Default)
Pin 2-3 Closed: ME Recovery Mode

Pin

1 2 3

Signal

NC

MFG_MODE_N

GND

Pin 1-2 Closed: Normal Mode (Default)
Pin 2-3 Closed: Security Override

2PHD_1: Chassis Intrusion Header

2PHD_2: ID LED Button Header

3PHD_4: ME Recovery Mode Jumper

3PHD_8: Flash Security Override Jumper

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4PHD_12

3PHD_1

3PHD_3

2PHD_3/2PHD_4

3PHD_10

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2PHD_3: i350_LAN0_ACTIVE LED

Pin

1

2

Signal

I350_LAN0_ACT_N

PV_LAN0_LINKUP_N

Pin

1

2

Signal

I350_LAN1_ACT_N

PV_LAN1_LINKUP_N

Pin

1 2 3

Signal

SYS_RESET_N

RESET_N

BMC_RESET_N

Pin 1-2 Closed: System reset (Default)
Pin 2-3 Closed: BMC reset

Pin

1

2

3

Signal

CLK

DATA

GND

Pin

1

2

3

Signal

PSU_SMB_ALERT_

BMC_N

PSU_SMB_ALERT_

BMC_N_R

NC

Pin 1-2 Closed: Enable (Default)
Pin 2-3 Closed: Disable PSU Alert

Pin 1 2 3 4

Signal

VCC5

NA

BUZ_1

BUZ_2

Pin 3-4 Closed: Normal Mode (Default)
Pin 2-3 Closed: Disable PC Beep
Pin 1-4 Closed: Use the External Speaker

2PHD_4: i350_LAN1_ACTIVE LED

3PHD_1: Reset Select Jumper

3PHD_3: IR_FW Jumper

3PHD_10: PSU_Alert Enable Jumper

4PHD_12: BUZZER Disable Jumper

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Rear Button

SW1

SW2

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SW1: ID LED Switch Button

Signal

Pin

Pin

Signal

FP_IDLED_BTN_N

1

2

GND

GND

3

4

GND

You can reset the CMOS settings by using this button, if you have
forgotten your system/setup password or need to clear system BIOS
setting.

1. Power off the system and disconnect power connectors from the
motherboard.

2. Press the button (Clear CMOS).

3. Reconnect power & power on the system.

NOTE: After flashing new BIOS, do the following steps:

a. Clear CMOS
b. Enter BIOS setup menu and load Default Settings. Then do a Save
and Exit from setup.

SW2: Clear CMOS Button

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LEDs on Motherboard:

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ID_LED

Pin

Signal

+

P3V3_AUX

-

ID_SW_L

State

Color

Description

On

Blue

System identified

Off

Off

System not identified

NOTE: The ID LED can be activated remotely using IPMI.

Please visit the TYAN Web Site at http://www.tyan.com to download the latest
IPMI Configuration Guide for more details.

BMC_LED

State

Color

Description

On

Green

VCC AUX PW OK

Blink

Green

BMC Heart LED

SAS_LED

State

Color

Description

Error

Red

LSI 2308 SAS Error
Active

Green

LSI 2308 SAS Active

HDD_LED

State

Color

Description

On

Blue

HDD Active
Off

off

HDD not Active

PSU_LED

Pin

Signal

+

+ VCC3_AUX

-

GND

State

Color

Description

OFF

OFF

The LED shuts off when the PSU
is normal.

ON

orange

The LED lights up when the PSU
is alert.

IPMI_LED

State

Color

Description

OFF

OFF

NO IPMI Alert

ON

orange

IPMI Alert

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2.5 Installing the Processor and Heatsink

NOTE: MiTAC is not liable for damage as a result of operating an

unsupported configuration.

The types of processors supported by the S5620 are listed in the 1.2 Hardware
Specifications section on page 4. Check our website at http://www.tyan.com for
the latest list of validated Intel® processors for this specific motherboard.

Processor Installation (Socket R3 for Intel Haswell CPU)

Follow the steps described later to install the processors and heat sinks.
The following pictures illustrate how to install the Intel® Haswell-EP processor on
the Socket R3. Please note that the motherboard may not look exactly like the one
you purchased. Therefore, the illustrations should be held for your reference only.

NOTE: Please save and replace the CPU protection cap when returning for service.

1. Locate the CPU socket.

2. Open the one side socket lever.

3. Open the other side of the lever.

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4. Lift the socket cover to a fully open position.

5. Place the CPU in the CPU socket and make sure that the gold arrow is located
in the right direction with two notches properly aligned.

6. Remove the socket protection cap.

7. Close the CPU socket cover.

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8. Close the socket one side lever.

9. Close the socket other side lever.

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