Technical Support U.S. and Canada: toll-free 1-877-785-2323
Technical Support international: +1-512-381-4397
Technical Support fax: 512-219-5195
Luminex® 200™ User Manual for LDS Version 1.7
CN-M078-01
PN 89-00002-00-150 R e v. A
October , 2005
Luminex reserves the right to modify its products and services at any time. This guide is subject to change
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Luminex 200 User Manual for LDS Version 1.7xMAP Technology
viPN 89-00002-00-150 Rev. A
1
Introduction
The Luminex® 200™ system is a compact analysis unit consisting of
a Luminex analyzer, the Luminex XY Platform (Luminex
a PC, Luminex software, and reagents. The Luminex analyzer
integrates optics, fluidics, and advanced signal processing in a 17
inch by 20 inch footprint. The Luminex XYP provides efficient
handling of 96-well microtiter plates. The PC uses Luminex software
to control the analyzer. The optional Luminex Sheath Delivery
system (Luminex
from a 20 liter container.
Photodiodes and a photomultiplier tube receive fluorescent signals
from xMAP
and delivers the signals to a digital signal processor (DSP).
Proprietary algorithms function with the DSP to greatly increase the
sensitivity.
®
XYP™),
®
SD™) is used to provide sheath fluid directly
®
microspheres. The analyzer digitizes the waveforms
Hardware and preloaded software simplify installation and setup, and
with the help of this manual, you will be able to begin using xMAP
technology.
Principle of
Operation
PN 89-00002-00-150 Rev. A1 - 1
The Luminex 200 system analyzes immunoassays, complex genetic
analyses, and enzymatic assays in one simple format. The reactants
(antibodies, oligonucleotides, substrates, etc.) of these assays are
anchored to the surfaces of uniquely fluorescent microscopic beads,
called microspheres. The unique fluorescent emission spectra of a
given microsphere identifies each of the assays performed
simultaneously on a single sample.
The Luminex analyzer individually analyz es xMA P mic r os ph ere s in
a flow stream. Every xMAP microsphere is accurately classified to
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
its own subset, based on its fluorescent signature. In addition, the
Luminex analyzer scans each microsphere for the presence of a
reporter fluorescence that quantifies the assay at the microsphere’s
surface.
Microtiter plates with 96 wells must be compatible with the Luminex
XYP plate holder. The following microtiter plate types are
compatible with the Luminex XYP instrument plate holder:
flatbottom, conical, round, filter bottom, or half-well plates of any
color. The overall plate height must be no more than 0.75” (19 mm).
Microtiter plates with 96 wells must be compatible with the Luminex
XYP instrument heater block temperature when performing heated
assays. The heater block temperature ranges from 35°C to 55°C
(95°F to 131°F) .
The system reads the wells in column-first order. An entire column
of wells is read; that is, well A1, B1, C1, D1, and so on to the end of
the column. Then the XY Platform moves over to the next column
and reads well A2, B2, C2, D2, and so on. When placing a plate on
the plate holder, place it so well A1 is in the upper-left corner of the
holder. You can run an entire plate, a consecutive range of samples
from the plate, or a single sample from the plate.
Basic ConceptsLuminex has pioneered a versatile and robust technology for the
measurement of soluble analytes. The Luminex 200 system performs
simultaneous, discrete measurements of multiple microsphere-based
reactions from a single specimen aliquot. A clear understanding of
the concepts and functionality associated with the instrument and
xMAP microspheres contributes to greater success with this
technology. We present a brief overview of some of the basic
concepts. For more information, refer to Practical Flow Cytometry,
4th edition, by Howard M. Shapiro, M.D. (New York: Wiley-Liss
Inc., 2003).
FluidicsThere are two fluidic paths in the Luminex analyzer. The first path is
a syringe-driven mechanism that controls the sample uptake. This
mechanism permits small sample uptake volumes from small
reaction volumes. The syringe-driven system transports a userspecified volume of sample from a microtiter plate to the cuvette.
The sample is injected into the cuvette at a steady rate for analysis.
After analysis, the sample path is purged with sheath fluid by the
second fluidics path. This process expels sheath fluid into the sample
1 - 2PN 89-00002-00-150 Rev. A
xMAP TechnologyIntroduction
container and effectively removes residual sample within the tubing,
valves, and probe. The second fluidics path is driven under positive
air pressure and supplies sheath fluid to the cuvette.
ExcitationThe excitation system in the Luminex analyzer uses two solid-state
lasers. A reporter laser excites fluorescent molecules bound to
biological reactants at the microsphere surface, and a classification
laser excites fluorochromes embedded in the microsphere. The lasers
illuminate the xMAP microspheres as they flow single-file through
the cuvette. These fluorescent signals are discriminated with
selective emission filters and are converted into intensity units by a
digital signal processor.
xMAP MicrospheresThe xMAP microspheres are highly uniform, polystyrene particles
that have been crosslinked during polymerization for great physical
and thermal stability. Varying amounts of fluorochromes embedded
within each microsphere give each microsphere set an unique
fluorescent signal. To ensure the stability of this address, it is
essential to protect the xMAP microspheres from light. Do not
subject xMAP microspheres to prolonged high temperatures, and
protect them from freeze/thaw manipulations.
Reporter FluorochromesEach xMAP microsphere is dyed to emit light in a certain
classification channel. All xMAP microspheres of a given emission
represent a distinct assay within a multiplex of assays. A reporter
channel is used to detect fluorescence bound to the surface of each
microsphere, and each reporter emission quantitates each of the
distinct assays. Only one reporter emission is used for multi-analyte
assays in the Luminex analyzer. The Luminex analyzer uses an
excitation wavelength of 532 nm, and has an emission wavelength of
575 nm ± 12 nm.
Fluorochromes R-Phycoerythrin and Alexa
Luminex analyzer, but you are not limited to these two. You may
have success using other fluorochromes suc h as Cyanine 3.
Phycoerythrin
Formula weight (Daltons)240,000470
Absorbance max (nm)480, 546, 565531
Extinction max (M
Emission max (nm)578554
-1cm-1
1,960,00083,800
)
®
532 work well with the
R-
Alexa
532
PN 89-00002-00-150 Rev. A1 - 3
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Quantum yield0.820.8
Fluorescence
Compensation
Repetitive Microsphere
Measurements
Fluorescent spillover occurs when an emission spectrum overlaps
other emission criteria; therefore, selective filtering cannot occur. In
most analyzers, emission spillover is corrected using a technique
called compensation. Compensation involves subtraction of emission
percentage from another emission signal. In the Luminex 200
system, compensation is not necessary—the reporter signal does not
spill over into classification emissions.
Bound to reagents at the surfaces of the xMAP microspheres, the
reporter provides raw analytical data. Because a microsphere
suspension provides near liquid phase reaction kinetics, each
microsphere theoretically binds an equal number of reporter
molecules. Equal binding results in a statistically even distribution of
reporter on each microsphere in a set. When the Luminex analyzer
registers numerous events for each set, the system reports individual
population values based on an even coating of reporter. This means
that numerous replicates for each microsphere population are
measured from a single reaction vessel. The confidence in a given
measurement strengthens with increased replicate measurements. For
adequate confidence, 100 collected events per microsphere set in
each reaction vessel is usually sufficient. Measurements are reported
as the median for the xMAP microspheres having a specific color
signal.
About this ManualThis manual introduces you to the Luminex 200 system. With step-
by-step instructions, the manual guides you through initial setup and
powering-on procedures. Next, it offers a concepts section which
describes some of the key topics encountered during system
operation. Once you have a working knowledge of the analyzer, the
manual’s text and figures lead you through the data collection
process, giving detailed explanations of available options and
offering examples when necessary. Glossary and troubleshooting
sections assist as references. In short, this manual instructs you
through each operational stage—from unpacking the Luminex
analyzer and XYP to collecting your data.
The conventions in this document assume a basic familiarity with
computers and a knowledge of Windows
document only one method of accessing a command, although many
commands are available through more than one method, such as
1 - 4PN 89-00002-00-150 Rev. A
®
software. We typically
xMAP TechnologyIntroduction
from the main menu bar, from the toolbar, and from menus that
appear when you right-click an area of the screen.
Technical
Assistance
You can find answers to frequently asked questions (FAQs) on our
website: http://www .luminexcorp.com. From the Support menu at the
top of the page, select FAQs.
For assistance, contact Luminex Technical Support via email. Users
may reach us at support@luminexcorp.com or
supporteurope@luminexcorp.com.
Users in the U.S. and Canada can call us at 1-877-785-BEAD (1877-785-2323) between the hours of 7:00 a.m. and 7:00 p.m. Central
Time, Monday through Friday. Users outside of the U.S. and Canada
can call us at +1 512-381-4397 between the hours of 7:00 a.m. and
7:00 p.m. Central Time, Monday through Friday.
Users in Europe by can call us at +31-162408333 between the hours
of 8:30 and 5:30, Central European Time, Monday through Friday.
PN 89-00002-00-150 Rev. A1 - 5
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
1 - 6PN 89-00002-00-150 Rev. A
Safety
Your safety is important. Please do not perform procedures on your
Luminex 200 system that are not specifically contained in this
manual, unless you are directed to do so by Luminex Technical
Support. This chapter discusses the following safety topics
• Intended Use
• Safety and Regulatory Symbols
• Warnings and Notes
• Safety Precautions
• Equipment Disposal
Intended UseThe Luminex analyzer is design ed for a wide range of indoor
laboratory testing applications measuring biomolecular reactions on
the surfaces of xMAP microspheres. The Luminex 200 for LDS
Version 1.7 system is intended for general laboratory use.
The Luminex XYP instrument is intended for use with the Luminex
analyzer. With the Luminex XYP, you can process 96-well microtiter
plates without handling individual samples. The Luminex XYP
works with microtiter plates that are no thicker than 0.75 in.
PN 89-00002-00-150 Rev. A2 - 1
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
These symbols describe warnings, cautions, and general information
used in the operation of this analyzer.
Warning
(refer to manual)
Warning
(refer to manual)
Warning
(refer to manual)
Catalog NumberConsult instructions
Batch CodeSerial Number
Expiration DateDate of Manufacture
Warning
(refer to manual)
Warning
(refer to manual)
Warning (refer to
manual)
for use
Manufacturer
European Union
Conformity
Underwriter’s
Laboratory
US
Canadian
Underwriter’s
Laboratory
Warnings and NotesInformational notes and warnings may appear in this manual.
Note: A note provides general helpful information. No safety or
performance issues are involved.
Caution: This message is used in cases where the hazard is minor or
only potential hazard is present. Failure to comply with the caution
may result in potentially hazardous conditions.
Warning: This message is used in cases where danger to the
operator or to the performance of the instrument is present. Failure to
comply with the warning may result in incorrect performance,
instrument failure, invalid results, or hazard to the operator.
2 - 2PN 89-00002-00-150 Rev. A
xMAP TechnologySafety
Danger: This message is used in cases where significant risk of
serious injury or death is present.
Safety PrecautionsPlease read the following safety information before setting up or
using the Luminex 200 system. A user should always be present
during system operation. This system contains electrical, mechanical,
and laser components which, if handled improperly, are potentially
harmful. In addition, biological hazards may be present during
Luminex analyzer operation. Therefore, Luminex Corporation
recommends that all Luminex analyzer users become familiar with
the specific safety advisories below, in addition to adhering to
standard laboratory safety practices. The protection provided by the
equipment may be impaired or the warranty voided if the equipment
is used in a manner not specified by Luminex Corporation.
Electrical The Luminex analyzer and Luminex XYP must be connected to
approved power sources.
Do not perform any maintenance or cleaning of the system’s
electrical components (except for the fuses).
This caution label appears on the back of Luminex analyzers and on
the Luminex XYP:
Figure 2-1. Fuse Replacement Warning Label
This label appears on the back of the Luminex analyzer and the
Luminex XYP.
PN 89-00002-00-150 Rev. A2 - 3
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Figure 2-2. European Safety Requirements Label
The Luminex analyzer complies with European Unio n (EU) saf e ty
requirements and, therefore, may be marketed in the Europe Single
Market.
The following voltage labels displays on the back of the Luminex
analyzer:
Figure 2-3. Luminex 200 Voltage Label (Coherent)
This voltage label displays on the back of the Luminex XYP:
Figure 2-4. Luminex XYP Voltage Label
2 - 4PN 89-00002-00-150 Rev. A
xMAP TechnologySafety
FluidicsThe Luminex analyzer contains fluidics. In the event of a fluid leak,
turn off all power to the system and disconnect all power cords.
Warning: If the system is used
to test biological samples, use
your standard laboratory safety
practices when handling system
waste.
Remember that the on/off switch is not a disconnect means - the
power cord must be removed from the outlet. Contact Luminex
Corporation for further information.
You must manually monitor waste levels. Do not allow the waste
container to overflow. You can avoid this by emptying the waste
container each time you fill the sheath fluid container. Do not place
the waste container on top of the analyzer.
Be careful not to touch the seal in the waste bottle cap or allow it to
become wet or dirty. This could cause the bottle to become
pressurized, causing pressure errors in the system. If the seal gets
wet, let it air-dry. Touching the seal can contaminate it. If it gets
dirty, you should replace the waste bottle cap.
To maintain a stable flow rate, do not move the waste container or
waste line during system operation. While you can move the line
along a horizontal surface, do not permanently reroute the waste line
elevation without first contacting Technical Support. You can move
the line temporarily for cleaning and maintenance purposes.
United States and international regulations require the following
warnings to appear on the analyzer during operation and
maintenance.
This label appears on the back panel of the analyzer:
Figure 2-5. Laser Class Label
This label appears on the back panel of the Luminex analyzer:
PN 89-00002-00-150 Rev. A2 - 5
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Figure 2-6. Laser Caution Label
Do not remove the analyzer cover. When performing routine
maintenance, ensure that power to the analyzer is OFF and the power
cord is disconnected.
All laser apertures in the analyzer are contained within a protective
housing. This label appears on the optics cover within the Luminex
analyzer.
Figure 2-7. Laser Caution Label on Optics Cover
This label appears above the laser apertures located inside the optics
enclosure inside the Luminex analyzer.
2 - 6PN 89-00002-00-150 Rev. A
xMAP TechnologySafety
Figure 2-8. Avoid Exposure Label
Caution: Use of controls or adjustments or performance of
procedures other than those specified herein may result in
hazardous radiation exposure.
Caution: To avoid exposure to hazardous radiation, only perform
procedures and adjustments as specified in this manual.
Mechanical
Warning: During operation, this system contains exposed,
moving parts. Risk of personal injury is present. Observe all
warnings and cautions.
Note: Access doors must be
closed while operating the
instrument. An operator must
be present during operation of
the instrument.
Biological
Warning: During operation, this system contains exposed,
moving parts which could result in puncture hazard. Risk of
personal injury is present. Keep hands and fingers away from the
sample probe. Keep hands and fingers out of the Luminex XYP
slot during operation.
Warning: During operation, this system contains exposed,
moving parts which could result in pinch point hazard. Risk of
personal injury is present. Keep hands and fingers away from the
syringe arm.
Warning: Human/animal samples may contain biohazardous
infectious agents. Where exposure (including aerosol) to potentially
biohazardous materials exists, follow appropriate biosafety
procedures and use personal protective eq uipment, such as gloves,
gowns, laboratory coats, face shields or masks, eye pr ot ec tion , an d
ventilation devices. Observe all local, state, and federal biohazard
handling regulations when disposing of biohazardous waste
material.
PN 89-00002-00-150 Rev. A2 - 7
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Heat
Warning: The heater plate of the Luminex XYP may be hot and
could cause personal injury if touched. Do not touch the heater
plate.
Blue Indicator Light
The blue light above the sample arm simply indicates the on/off
status of the instrument, and is harmless. The blue light emitting
diode (LED) does not emit light in the UV spectrum.
Equipment DisposalThe Waste Electrical and Electronic Equipment Directive 2002/96/
EC requires that you properly dispose of electrical and electronic
equipment when it reaches its end of life.
NOTE: This directive applies to customers in the European Union
(EU) only. Users outside of the EU may disregard this section.
TM
If you are disposing of a Luminex 200 Analyzer, SD
TM
Instrument, you must decontaminate the system. Refer to
XYP
“Decontaminating the Luminex Analyzer for Return Shipment” on
page 7-11. Next, call Luminex Technical Support for a Recycled
Returned Materials Authorization (RMA) number at +1 512-3814397 between the hours of 7:00 a.m. to 7:00 p.m. Central Time,
Monday through Friday. You will then return the equipment to:
Luminex Corporation
12201 Technology Blvd., Suite 130
Austin, TX 78727
System, or
For information on disposing of the PC or monitor, refer to
manufacturer documentation.
2 - 8PN 89-00002-00-150 Rev. A
System Overview
3
HardwareThe Luminex 200 for LDS Version 1.7 system includes the following
hardware:
•Luminex analyzer
•Computer (PC), monitor, and access ories
•Luminex XYP instrument (with long sample probe)
•Power cables
•Short sample probe
•Reservoir
•Shield
•Heater block
•Sheath fluid container
•Waste container
•Sheath fluid line
•Air line
•Sheath fluid intake line
•Serial cable
•USB cable
•CANBUS cable
•Sample probe height alignment kit
In addition, you can purchase the optional Luminex Sheath Delivery
system (Luminex SD).
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Required
Laboratory
Reagents
The following items are necessary to run the Luminex 200 system.
They are not provided by Luminex.
•Household bleach
•70% isopropanol or 70% ethanol
•Mild detergent
•Distilled water
SoftwareLuminex Data Collector software provides complete control of the
Luminex analyzer and performs real-time digital analysis of assays.
The Luminex 200 system is preloaded with the Luminex software.
However, we supply a software CD in case you need to reinstall the
software.
This software requires a dedicated system. Unauthorized additional
software is prohibited and may result in improper operation of the
system.
Luminex 200
Performance
Specifications
Speed•USB communications link for fast data transfer
•Automatic transfer of assay templates and new reagent
information into the system via a large capacity read/write CD
•Installation: < 4 hours
•System calibration: < 10 minutes
•Analyze one 96-well plate/hour depending on manufacturer’s kit
•Up to 100 xMAP microsphere sets per sample
•System warmup: 30 minutes. Systems that remain inactive for at
least four hours will require a warm-up to restart the lasers. After
acquiring sample, running system calibrators, running system
controls, and warming up the instrument, the system resets the
four-hour internal clock.
Accuracy and Precision•Sample uptake volume: ± 5%
•Classification of xMAP microspheres: > 80%
•Misclassification of xMAP microspheres: ≤ 2% - may vary by
xMAP microsphere product lines. Refer to the specific product
information sheet for further details.
•Internal sample carry over: < 0.9%
•Soluble background fluorescence emission at 575 nm
automatically subtracted from fluorescence intensity values
3 - 2PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Overview
Sensitivity•Detect 1000 fluorochromes phycoerythrin (PE) per xMAP
microsphere
•Reporter channel dynamic range: 3.5 decades of detection
•Maintain samples at a constant temperature from 35°C to 55°C
(95°F to 131°F)
•Automatic sampling from a 96-well plate
•Start sampling from any well position
•Sheath container and waste container hold enough volume to run
up to two 96-well plates between refills
•Microtiter plates with 96 wells must be compatible with the
Luminex XYP instrument plate holder. The following microtiter
plate types are compatible with the Luminex XYP instrument
plate holder: any color of flatbottom, conical, round, filter
bottom, or half-well plates. The overall plate must not have an
overall height of more than 0.75” (19 mm).
•Microtiter plates with 96 wells must be compatible with
Luminex XYP instrument heater block temperature from 35°C to
55°C (95°F to 131°F) when performing heated assays and using
the heater block.
Luminex 200
Analyzer
Specifications
PN 89-00002-00-150 Rev. A3 - 3
•Indoor use only
•Operating temperature: 15°C to 30°C (59°F to 86°F)
•Humidity: 20% to 80%, noncondensing
•Altitude: Operation up to 2400 m (7874 ft.) above mean sea level
•Physical dimensions: 43 cm (17 inches) W x 50.5 cm (20 inches)
D x 24.5 cm (9.5 inches) H
•Weight: maximum of 25 kg (60 lbs.)
•UL installation category: UL Installation Category II, as defined
in Annex J of UL 61010A-1
•Pollution degree: UL Pollution Degree 2, as defined in Section
3.7.3.2 of UL 61010A-1
•Shipping and storage: The allowable shipping and storage
temperature and humidity ranges are 0°C to + 50°C and 20-80%
noncondensing, respectively
•Input voltage ran ge: 1 00 - 120 V~ ± 10%, 1.4 Amp, and 200-240
V~ ± 10%, 0.8 Amp, 47-63 Hz.
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
•AC inlet fuse: 3 Amp, 250 V~, fast acting
Optics•Reporter laser: 532 nm, nominal output 10-15 mW, maximum
500 mW, frequency-doubled diode; mode of operation,
continuous wave (CW)
•Classification laser: 635 nm, 9.1 mW ± 6%, maximum output 25
mW, diode; mode of operation, continuous wave (CW)
•Reporter detector: Photomultiplier tube, detection bandwidth of
565-585 nm
•Classification detector: Avalanche photo diodes with temperature
compensation
•Doublet discrimination detector: Avalanche photo diodes with
temperature compensation
PC SpecificationsFor systems using a PC, A Dell OptiPlex GX280 or Dell Optiplex
GX520 (or newer PC) is shipped with the Luminex 200 system. For
systems using a laptop, a Dell D610 Notebook is shipped with the
system. Microsoft
The power requirements are 115-230 V~, 6 Amps, 50-60 Hz
For updated information regarding the PC, notebook, or operating
system, go to http://www.luminexcorp.com.
® Windows® XP is pre-installed on the computers.
Recommended
Additional
You may find the following items helpful to protect the electronic
components of your Luminex 200 System.
Equipment
PrinterWe recommend that you have a printer installed to your system so
that you can print reports and diagnostics. We recommend an HP
LaserJet 2300 printer or available equivalent.
Uninterruptible power
supply (UPS)
Surge ProtectorIf you do not use a UPS, use a surge protector. Choose a protector
Luminex highly recommends using an uninterruptible power supply
(UPS) to protect your system from a power outage. Choose a supply
that can provide 1050 Watts for at least 45 minutes. The UPS should
be UL listed and CSA certified. The UPS also needs to be CE
marked if used internationally.
that meets your needs. Factors to consider include electrical
environment, endurance, suppressed voltage rating, and method of
protection. It should have six outlets, be rated at least 1500 Watts,
PN 89-00002-00-150 Rev. A3 - 5
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
and be UL listed, CSA certified, CE marked for nondomestic use
when used internationally.
VortexUse VWR product number 58816-121: Speed range 0-3200 rpm or
equivalent.
Bath SonicatorUse Cole-Parmer® product number 08849-00: Operating frequency
55 kHz or equivalent.
Luminex System
Overview
Electronic
Power Input
Module
Communications
Ports (DB9-PIN)
Luminex Analyzer
Ventilation Filter
The Luminex analyzer consists of three subsystems: electronic,
fluidic, and optical. In addition, several Luminex XYP system
features are present. The Luminex XYP instrument is a selfcontained system with one access door that contains a plate holder
and a reservoir. A heater plate can be placed in the plate holder.
The following section describes the user-accessible components of
each subsystem, along with the XYP features. Chapter 7,
"Maintenance and Cleaning", describes routine maintenance for each
of these components.
The power input modules contain the on/off switch and fuses.
The communications port connects the Luminex analyzer or the
Luminex XYP to the computer, and the Luminex SD system to the
Luminex analyzer.
Located on the bottom of the Luminex analyzer, the filter must be
checked and cleaned as necessary. For proper ventilation, do not
obstruct the area below and allow at least two inches (5 cm) of
clearance around the Luminex analyzer.
3 - 6PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Overview
Luminex XYP
Instrument
Ventilation Filter
Air Intake Access Door
h
c
i
t
w
S
er
w
o
P
Power Input Module
The XYP instrument ventilation filter cleans the air that cools the
internal parts of the Luminex XYP instrument. See Figure 3-1.
XYP Instrument
Ventilation Filter
Communications
Ports (DB9)
XYP to PC
Serial cable
Analyzer
Ventilation Filter
Figure 3-1 Rear View of Luminex Analyzer
PN 89-00002-00-150 Rev. A3 - 7
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Fluidics Luminex XYP Sample Probe: A stainless steel sample probe
that acquires the sample..
Warning: During operation,
this system contains exposed,
moving parts which can cause
puncture wounds. Risk of personal injury is present. Keep
hands and fingers away from the
sample probe.
Note: The probe shield is not in
place for this photo. You should
always replace the probe shield
before operating the system.
Cheminert
® fitting: The fitting attaches the sample probe to the
sample tubing. Disconnect this fitting when you remove the sample
probe. See Figure 3-2.
Access doors: The Luminex 200 analyzer has three access doors.
Two of the access doors are on the front, and the third is on the back.
The front left access door provides access to the sheath filter. The
front center access door provides access to the syringe. The rear
access door provides access to the air intake filter. See Figure 3-3.
3 - 8PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Overview
Left Door, Access
to Service Panel
Figure 3-3 Front View of Luminex analyzer Showing Access Doors
Center Door,
Access to Syringe
Air filter and access door: A replaceable air intake filter cleans
the air used to pressurize the sheath fluid. This filter is enclosed
behind an access door located on the back of the Luminex analyzer.
See Figure 3-4.
Figure 3-4 Air Filter on Rear of Instrument
PN 89-00002-00-150 Rev. A3 - 9
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Syringe: The syringe delivers a sample from the 96 well microtiter
plate to the cuvette. It is located in the compartment behind the
center door.
1
2
1. Syringe Seal 2. Syringe
Figure 3-5 Syringe and Syringe Seal
Sheath filter: The sheath filter removes particles greater than 10
microns in diameter from the sheath fluid. It is located behind the left
access door.
Sheath Filter
Assembly
Figure 3-6 Sheath Filter Assembly
Air, waste fluid, and sheath fluid connectors: The air, waste,
and sheath connectors, located on the left side of the analyzer,
connect to the SD system and waste fluid containers using clear
tubing. The air connector is green, the sheath fluid connector is blue,
and the waste fluid connector is orange.
3 - 10PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Overview
Sheath Fluid
Connector (Blue)
Figure 3-7 Left Side of Analyzer - Air and Fluid Connectors
Air Connector
(Green)
Waste
Connector
(Orange)
Sheath fluid container (not shown): Holds she ath fluid. For
proper operation, place the Luminex SD system at the same level as
the base of the Luminex XYP instrument. Do not put it on top of the
Luminex 200 analyzer. If you are not using the SD system, sheath
fluid levels must be monitored manually. Check the sheath fluid level
before starting a run or procedure.
Warning: If biological samples have been tested with the
system, use your standard laboratory safety practices.
Waste fluid container (not shown): The waste fluid container
receives waste from the system. The waste container should not be
placed on top of the instrument. Ensure that the waste tubing is not
elevated above the level of the Luminex 200 analyzer at any point.
Contact Luminex Technical Support before you relocate the waste
fluid container. To maintain a stable flow rate, do not move the waste
line or container during system operation.
Caution: Waste levels must be manually monitored. Do not
allow the waste container to overflow
.
PN 89-00002-00-150 Rev. A3 - 11
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
OpticalThe optical system contains the optics assembly and the excitation
lasers. The optical assemblies do not require user adjustment.
Luminex XYP ReservoirYou can use 70% isopropanol or 70% ethanol, deionized water, and
10%-20% bleach solution in the reservoir for Luminex analyzer
cleaning and maintenance procedures.
Luminex XYP Heater
Block
Use the heater block as required by your assay procedures. When
you are not using the heater block you can store it in the bracket
inside the left access door of the Luminex analyzer.
3 - 12PN 89-00002-00-150 Rev. A
4
Installation
Luminex 200
System Installation
Note: The Luminex 200 System is
too heavy for one person to lift
alone. Two people should unpack
and lift the system to the
workbench.
Ensure that the facility complies with all system and safety
requirements. If you are using the optional Luminex SD, install it
after completely installing the Luminex analyzer and the Luminex
XYP. See the Luminex Sheath Delivery System appendix for
instructions.
To set up and start up the Luminex 200 system:
1. Unpack the Luminex analyzer, Luminex XYP instrument, and
the PC. Review the hardware list on page 3-1 and identify each
system component.
2. Place the Luminex XYP on a clean, flat surface and remove the
blue shipping pin. Leave the black knob in place.
3. Attach the power cord and the communication cable to the
Luminex XYP. Do not plug the power cord into the outlet.
4. Maneuver the Luminex analyzer until the hole in the alignment
plate lines up with the black knob of the Luminex XYP.
Figure 4-1. Alignment Plate and Knob
PN 89-00002-00-150 Rev. A4 - 1
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
5. Place the Luminex analyzer on top of the Luminex XYP. Do not
plug it into the power outlet.
6. Without removing the Luminex analyzer alignment plate from
the black knob, shift the analyzer so it is centered on the
Luminex XYP.
7. Replace the short sample probe with the long sample probe as
follows: Unsnap the light housing above the probe. Loosen the
Cheminert fitting that holds the sample probe in place. Gently
grasp the probe and push up. Remove the sample probe out of
the top of the sample arm. Push the long sample probe into the
top of the sample arm, and tighten the Cheminert fitting.
8. Adjust the position of the Luminex analyzer with the Luminex
XYP.
9. Attach the waste container.
10. Fill and attach the sheath fluid container. Fill the container with
sheath fluid to just below the air intake.
To set up the PC:
1. Place the PC to the right of the Luminex analyzer and Luminex
XYP. Do not place the PC on top of the analyzer.
2. Place the monitor on top of the PC and connect the cable
between the monitor and the PC.
3. Attach a power cable to the power input modules of the PC and
monitor. Do not plug the power cable into the power outlet.
4. Connect the mouse and keyboard to the PC.
5. Connect one of the commun ications cables between the Luminex
analyzer communications port and COM Port 1 on the PC.
6. Connect the other communications cable between the XYP
instrument communications port and the COM port 2 on the PC.
7. Plug all instrument power cords into an approved power source.
4 - 2PN 89-00002-00-150 Rev. A
xMAP TechnologyInstallation
Luminex 200
Software Setup
After performing the Luminex 200 system assembly, ensure tha t the
proper interface between the analyzer and PC is in place.
To set up the software:
1. Turn on the Luminex analyzer, then turn on the PC. The
Luminex software launches automatically.
2. Click Yes to accept the End-User License Agreement. If the
system does not prompt you to accept this agreement, read the
agreement shown after the title page of this manual. If you reject
the agreement, you cannot use the Luminex 200 system . Contact
Luminex Technical Support if you reject the agreement.
3. Verify that the analyzer status, shown in the System Monitor box
on the Luminex Main window, is at “Standby.” If the status is
“Bad Link,” exit the Luminex software and start it again.
4. On the Analyzer menu, click Setup. The Machine Setup dialog
box opens.
Figure 4-2. Machine Setup Dialog Box
5. Make sure that COM Port is set to 1. This setting refers to the
port on your computer, not on the Luminex analyzer.
6. Make sure that the XY Port is set to 2. If communication
between the Luminex analyzer and the Luminex XYP instrument
fails, switch ports so that the Luminex analyzer is on COM port
2 and the XY Port is set to 1. This task enables you to check if
the serial cable is the cause of the communication errors.
PN 89-00002-00-150 Rev. A4 - 3
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Adjusting the
Sample Probe
Height
You must adjust the sample probe vertical height each time you
install a sample probe, change the type or style of microtiter plate,
move the instrument, or remove and replace the sample probe for
cleaning.
1. Turn on the Luminex XYP, the Luminex analyzer, and the PC.
Wait for the Luminex Data Collector software to start.
2. If already installed, remove the clear plastic shield that covers
the sample probe area.
Note: Verify that the microtiter
plate is not warped. Warped
plates can lead to incorrect
probe height adjustment.
3. In a 96-well microtiter plate where overall height is no more than
0.75 inches (19 mm), place the appropriate alignment tool in the
plate:
For a standard plate with flat-bottom wells—stack two of the
larger (5.08 mm diameter) alignment discs together and place
them into well A1.
4 - 4PN 89-00002-00-150 Rev. A
xMAP TechnologyInstallation
For a filter bottom plate—stack three of the larger (5.08 mm
diameter) alignment discs together and place them into well A1.
For a half-volume plate with flat-bottom wells—stack two of
the smaller (3.35 mm diameter) alignment discs together and
place them into well A1.
For a round-bottom (U-bottom) plate—stack two of the
smaller (3.35 mm diameter) alignment discs together and place
them into well A1.
For a plate with conical wells—place one alignment sphere into
well A1.
4. Click Eject.
5. Place the 96-well microtiter plate on the Luminex XYP
instrument plate holder with position A1 in the top left corner.
6. Click Retract to retract the plate.
Note: To avoid adjusting the
sample probe too low, open
the Luminex XYP door as
you begin adjusting the
probe height. The plate
should not bounce up or
down as you lower or raise
the sample arm. DO NOT
PUT YOUR HAND INSIDE
THE LUMINEX XYP!
7. Loosen the probe adjustment screw on the probe holder one-third
to one-half turn. Pull it upward until it touches the top of the
adjustment slide. Tighten the probe adjustment screw.
8. Click Options on the toolbar.
9. Click Setup XY, then click Setup. A dialog box appears.
10. Click Test to lower the sample probe down.
11. Loosen the probe adjustment screw 1/3-1/2 turn.
12. Gently push the sample probe down until it just touches the top
of the alignment discs or sphere.
13. Tighten the probe adjustment screw.
14. Click Test to raise the sample probe, then click OK to close the
dialog box.
15. Replace the clear plastic shield that covers the sample probe
area.
PN 89-00002-00-150 Rev. A4 - 5
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Installing Software
and Firmware
The Luminex 200 system arrives preloaded with the Data Collector
software. It is possible that you may need to reload the software at
some time.
To reinstall the software:
1. Backup log files. Copy your template directory and the file
named calibrationlog.mdb to a backup location. These files may
be found in the Luminex setup directory.
2. Uninstall the Luminex Data Collector software using the
Windows Add/Remove programs function. On the lower left
corner of your screen, click Start > Settings > Control Panel.
The Control Panel window opens. Click Add/Remove
Programs. The Add/Remove Programs window opens. Click
Luminex Data Collector, then click Change/Remove. Follow
the prompts throughout the rest of the removal process.
3. Insert the Luminex CD into the CD ROM drive. The program
manager begins installing the software, displaying instructions
when necessary.
4. Restart your computer after installing the Luminex software.
5. Copy your template file directory and the calibrationlog.mdb file
from the backup location to the Luminex setup directory.
6. Verify that the firmware version, listed in the Help menu, is the
most recent version. Contact Technical Support to check this
information.
What to Do NextAfter you assemble and power the system, verify that your analyzer
is correctly installed and functions properly using the “Verification”
section beginning on page 8-14 in the “Troubleshooting” chapter.
You can find answers to frequently asked questions (FAQs) on our
website: http://www .luminexcorp.com. From the Support menu at the
top of the page, select FAQs.
For assistance, contact Luminex Technical Support via email. Users
may reach us at support@luminexcorp.com or
supporteurope@luminexcorp.com.
Users in the U.S. and Canada can call us at 1-877-785-BEAD (1877-785-2323) between the hours of 7:00 a.m. and 7:00 p.m. Central
4 - 6PN 89-00002-00-150 Rev. A
xMAP TechnologyInstallation
Time, Monday through Friday. Users outside of the U.S. and Canada
can call us at +1 512-381-4397 between the hours of 7:00 a.m. and
7:00 p.m. Central Time, Monday through Friday.
Users in Europe by can call us at +31-162408333 between the hours
of 8:30 and 5:30, Central European Time, Monday through Friday.
PN 89-00002-00-150 Rev. A4 - 7
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
4 - 8PN 89-00002-00-150 Rev. A
System Startup
Title B
This chapter describes how to start up your system. The topics
included are:
•Luminex Main Window
•Calibration
•Analyzer menu commands
Luminex Main
Window
ar
Menu Bar
Tool Bar
Startup
Display
Status Bar
Use the Luminex software to start the system. To start the software
and open the main window, double-click the Luminex Data
Collector icon on the Windows desktop.
System
Monitor
Figure 5-1. Luminex Main Window
PN 89-00002-00-150 Rev. A5 - 1
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
The Luminex Main window has six components: Title bar, Menu bar,
Tool bar, Startup display, Status bar, and System monitor.
The Title bar shows the name of the software, and changes
depending on what section of the software you are using.
The Menu bar contains commands to set up the Luminex a nalyzer
and perform data acquisition. See Chapter 6 for more detail.
The Tool bar, also discussed in greater detail in Chapter 6, contains
icons for commands that are frequently used when running the
Luminex software.
The Startup display shows icons for many frequently-used
commands. You use most of these commands when starting the
system, acquiring data, and shutting the system down.
The Status bar shows the status of current software events.
The System monitor displays Device and Calibration status.
CalibrationYou must perform Luminex analyzer calibration after system
installation, instrument service, whenever the system is moved,
monthly with routine use, and whenever the d Cal Temp temperature
shown on the system monitor panel indicates a change of more than
Add New Classification
Channel Calibration Lots
3 degrees Celsius (
instrument daily as part of your startup routine. The calibrators are
xMAP microspheres with known light-scattering properties and
known fluorescent intensities in the reporter (RP1), classification 1
(CL1), and classification 2 (CL2) wavelength ranges. The calibration
process uses these xMAP microspheres to adjust voltage settings for
optimal and consistent microsphere classification and reporter
readings. Current calibrated settings automatically apply to any new
session.
Before you perform an initial calibration for the analyzer, and
whenever you receive a new supply of xMAP calibration
microspheres, enter the product and lot numbers and the calibration
target values.
°C). For optimal performance, calibrate the
5 - 2PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Startup
To add a new lot of xMAP classification calibration
microspheres:
1. Click Calibrate. The Start Calibration dialog box opens.
Figure 5-2. Start Calibration Dialog Box
2. Click New in the Classification Channel box. The Add New
Classification Calibrator dialog box opens.
Figure 5-3. Add New Classification Calibrator Dialog Box
3. Enter the information into the dialog box, using the values on the
Certificate of Quality that came with your xMAP calibration
microspheres. Do not enter a value for CL3, but make sure to
click within the CL3 box and press Enter to save the other
values entered.
4. Click OK. You can now use this classification channel xMAP
calibration microsphere lot to calibrate your instrument.
PN 89-00002-00-150 Rev. A5 - 3
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Add New Reporter
Channel Calibration Lots
Before you perform initial calibration for the analyzer, and whenever
you receive a new supply of xMAP Calibration microspheres, enter
the product and lot numbers and the calibration target values.
To add a new lot of xMAP reporter calibration microspheres:
1. Click Calibrate. The Start Calibration dialog box opens.
Figure 5-4. Start Calibration Dialog Box
2. Click New in the reporter channel area. The Add New Reporter
Calibrator dialog box opens.
Figure 5-5. Add New Reporter Calibrator Dialog Box
3. Fill in the information on this dialog box using the values on the
Certificate of Quality Analysis included with your xMAP
calibration microspheres. Press Enter.
4. Click OK. You can now use this xMAP reporter channel
calibration microsphere lot to calibrate your instrument.
5 - 4PN 89-00002-00-150 Rev. A
xMAP TechnologySystem Startup
Calibrate the Luminex
Analyzer
Note: Do not dilute the xMAP
calibrator reagents. Limit exposure
to light!
Note: To select a different well
location, click Options on the
toolbar. Select the Setup XY tab,
then click on the drop-down arrow
next to the entry cell for the
calibrator, then click on the well
location.
Note: When dispensing calibration
and control microspheres, hold the
bottle upside down at a 90-degree
angle to the microtiter plate to
ensure that you are getting
accurate drop volume.
In addition to calibrating the analyzer after installation, you can
enhance optimal performance by calibrating the instrument daily as
part of your startup routine and whenever the d Cal Temp
temperature shown on the system monitor panel indicates a change
of more than 3 degrees Celsius (
°C).
To calibrate the Luminex analyzer:
1. Turn on the Luminex analyzer. Click Warmup on the main
screen, then click OK on the dialog box that appears. After the
30-minute warmup, go on to the next step.
2. Click Prime on the main screen. Click OK when you want to
begin the prime cycle.
3. Click Options on the toolbar and ensure that the setting for
alcohol flush and wash is set to Reservoir, and that the wells
selected for CAL1 and CAL2 correspond to the wells in the plate
that you want to use for calibration.
4. Vortex the xMAP calibrator containers to ensure homogeneity
(CAL1 and CAL2).
5. Load a microtiter plate with at least five drops of xMAP
classification microspheres (CAL1) and at least five drops of
xMAP reporter calibration microspheres (CAL2) into the wells
you designated.
Place classification
calibrator in a well
(i.e., A1). You may
assign different
well locations, if
desired.
Place reporter
calibrator in a
well (i.e., B1).
1 2 3 4 5 6 7 8 9 10 11 12
A
B
C
D
E
F
G
H
Figure 5-6. 96-well Plate. Well A1 and B1 Filled
6. Click Eject on the toolbar and place the plate on the plate holder
with well A1 in the top, left-hand corner.
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7. Fill the reservoir with a solution of 70% isopropanol or 70%
ethanol. Click Retract on the toolbar to retract the plate holder.
8. Click Alcohol Flush, then click OK. The alcohol flush removes
air from the fluidics. This takes about 5 minutes.
9. Click Eject on the toolbar and replace the alcohol in the
reservoir with distilled water. Click Retract on the toolbar to
retract the plate holder.
10. Click Calibrate on the main screen. The Start Calibration dialog
box opens.
Figure 5-7. Start Calibration Dialog Box
11. Enter your name in the Operator text box.
12. Select the Product / Lot Number for the xMAP classification
calibration and reporter microspheres.
13. Click OK. The Calibration dialog box opens.
Figure 5-8. Calibration Dialog Box
14. Make sure Classification is selected, and click Start.
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The progress bar shows the calibration progress, which should
take less than two minutes. If the status changes to “Sample
Empty” before calibration completes, a “Calibration Failed”
message appears. Click OK and restart the process. When
calibration finishes for the classification microspheres, a
“Calibration Succeeded” message appears. The settings and any
comment you enter are logged into the calibration report.
15. Click OK in the confirmation dialog box. The Calibration dialog
box opens again.
16. Select Reporter and click Start. The progress bar shows you the
calibration progress. Calibration should take less than two
minutes. If the status in the system monitor changes to “Sample
Empty” before calibration completes, a “Calibration Failed”
message appears. Click OK and start the process again. When
calibration finishes for the reporter microspheres, a “Calibration
Succeeded” message appears. The settings and any comment you
enter are logged into the calibration report.
Preview or Print
Calibration Report
17. Click OK on the confirmation dialog box.
xMAP Calibration microspheres are very concentrated. Each
time you calibrate the instrument, follow with 4 wash cycles
using distilled water.
18. Click Eject from the toolbar and remove the plate.
19. Click Retract to retract the plate holder.
The calibration report is a quality control tool that shows the
frequency of past calibrations, operators of past calibrations, and
trends in instrument settings. The calibration report is available as a
log or as a detailed report.
To print or preview the calibration report:
1. Close all open sessions.
2. Click Print on the toolbar. The Print dialog box opens.
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Figure 5-9. Print Dialog Box
3. Check the box in front of the report type you want. You can
check both boxes to see both kinds of calibration report.
4. Click OK to print the calibration report, or Preview to see the
report on your screen. Figure 5-10 shows an example of a
calibration log. Figure 5-11 shows an example of calibration
detail report.
Figure 5-10. Calibration Log
The calibration log shows gain values associated with each
calibration. A gain value is a representation of the voltage. Use this
log to observe the gain values. If you see a spike in voltage (20 V or
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more) in the gain value for a channel from one calibration to the
next, the difference may indicate a problem with the instrument. It is
normal to see a value of -1 for RP1 gain for classification
calibrations. You also see gain values of -1 listed for DD, CL1, and
CL2 for reporter calibrations.
Figure 5-11. Luminex Calibration Detail Report
The calibration detail report is often used by Luminex field service
personnel when performing system maintenance. The report shows
system temperature, voltage, and pressure readings.
Analyzer menu
commands
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Use the Analyzer commands to prepare the Luminex analyzer for
sample acquisition, analysis, and shut down. On the Analyzer menu,
choose the command you want to perform. Many of these commands
also have buttons on the main screen.
Calibrate: Opens the Start Calibration dialog box. See page 5-2 for
calibration procedures.
Setup: Opens the Machine Setup dialog box. System connections
must be defined with initial installation of the instrument, and again
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
if a Luminex XYP instrument is added to the system. See page 4-3
for more information.
Sanitize: Decontaminates the sample lines and cuvette after
biohazard contact. Use a 10%-20% bleach solution to sanitize the
system after running biohazardous samples. See page 7-3 for the
sanitizing procedure.
Prime: Removes air pockets from the fluidic pathways. Use this
operation after system installation and following replacement of the
sheath fluid. Sheath fluid flows freely for several seconds followed
by a fill-and-purge action by the syringe. Repeat until the waste line
outside the instrument appears free of all significant air pockets.
Alcohol flush: Removes air bubbles from the walls of the cuvette.
Use 70% isopropanol or 70% ethanol for the alcohol flush solution.
After an alcohol flush, run 2 wash cycles with distilled water.
Wash cycle: Removes residual sample from the sample acquisition
lines. Place at least 200 µL of distilled water in the Luminex XYP
reservoir. After calibration, run 4 wash cycles with distilled water.
Note: Always follow a Back flush
with a 70% isopropanol OR a 70%
ethanol Alcohol flush. Follow the
Alcohol Flush with two distilled water
or sheath fluid wash cycles.
Back flush: Removes obstructions from the cuvette. Use this if
fluid does not flow through the waste tubing during prime cycles or
during sample acquisition. Routine back flushes are not
recommended; use back flush only as a troubleshooting method.
Drain: Temporarily drains the cuvette, then does a fill command.
Useful for cleaning debris buildup in the cuvette, or for clearing
bubbles from the cuvette. Routine drains are not recommended.
Sheath fluid is expelled at the end of the drain function.
Soak: Holds a solution in the fluidics lines for an extended time.
When shutting down the instrument overnight or for an extended
period of time, use a distilled water soak. Salt in the sheath fluid can
form salt crystals in the sample probe or instrument tubing. When
restarting the instrument, follow the routine startup procedure shown
on page 7-2 to re-equilibrate the system with sheath fluid. Before you
use the Soak command, place 1.2 mL of soak solution in the
Luminex XYP reservoir.
Warmup: Performs an initial 30-minute optics warmup. While
powered, the optics remain engaged for 4 hours after each
acquisition. After 4 hours of inactivity, the lasers automatically shut
off, and must be warmed up again before the next acquisition. If Start
is activated before warming up, an automatic 30-minute warmup
phase is started. The warmup phase can be cancelled using the
Cancel warmup command on the Analyzer menu. We strongly
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recommend that you do not cancel warmup. Your test results will be
accurate only if the system is completely warmed up before you
begin acquisition. A complete warmup cycle is critical for accurate
calibration.
XYP Retract: Retracts the plate into the Luminex XYP slot.
Enable Heater: Warms the Luminex XYP heater block.
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Data Acquisition
6
The Luminex analyzer uses Luminex Data Collector software to
acquire data. This chapter describes the following topics:
• Options
• Sessions
• Templates
• Multiplex Acquisition
• Data Collection
•Reports
OptionsBefore you can acquire data, you must set up some of the different
options available. Click Options on the toolbar to open the Options
dialog box. The Options dialog box has these tabs: User, Acquisition,
Advanced, Setup XY, and Info. These options apply to all sessions.
User tabThis tab has controls to set preferences for how the system works.
Figure 6-1. Options Dialog Box - User Tab
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Sound effects: Enables sounds during system operation.
Clear recent file list: Removes the list of recent files from the File
menu. Do this each time you want to clear the list of recent files.
Show project settings dialog on new session: Opens the project
settings dialog box when you start a new session. You can also click
Settings on the toolbar to open the settings dialog box.
Display full path of session on title bar: If this option is unchecked,
an abbreviated file name displays on the title bar.
Auto resize acquisition grid: Resizes the acquisition grid depending
on the length of text within each column.
Default beadmap: Controls the beadmap (or MAP) used when you
begin a session via the New Session button on the Main screen.
Click Browse to change the setting. Each MAP refers to a certain
combination of xMAP microspheres. The 100, 50, and 25 Region
MAPs are standard MAPs for multiple analyte data collection. Use
the Development MAP for development microspheres. The
Calibrator MAP and NoRegion MAPS are for system diagnostics.
Figure 6-2. 100 Region MAP
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Acquisition tabOn this tab you can select the default folder for your session files. If
you want a folder other than the one shown, click Browse and select
a different folder.
Figure 6-3. Options Dialog Box - Acquisition Tab
Advanced tabUse the Advanced Tab to set properties in the Luminex Data
Collector software. You can se lect multiple commands in this tab.
Figure 6-4. Options Dialog Box - Advanced Tab
Show Dot Plot. Enables toggling between a bar graph and dot plo t .
Show Statistics. Displays all session statistics in the acquisition
window.
Show Prep Mode. Sets a gate before actually running an assay.
Show RP1 Gate. This is a Field Service option. Do not select this
option unless directed by Technical Support.
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Show APD Voltages. This is a Field Service option. Do not select
this option unless directed by Technical Support
Show Project Properties. This is a Field Service option. Do not
select this option unless directed by Technical Support.
View Calibration Detail. Shows the detail screen while calibrating
the instrument.
Allow FileMode. Enables use to replay previously run sessions.
Enable Liquid Handler. This is a Field Service option. Do not
select this option unless directed by Technical Support.
Info tabView the serial number, version numbers and build date. This
information is for display only; you cannot change it.
Figure 6-5. Options Dialog Box - Info Tab
Setup XY TabThis tab has controls to set preferences for how the Luminex XYP
operates.
Figure 6-6. Options Dialog Box - Setup XY Tab
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To use the heater, check Enabled in the Heater area. Use the Set
Point control to select a temperature between 35
°C and 60°C (95°F
to 140°F). To maintain heater temperature between sessions, check
Hold Temperaturebetween sessions checkbox. If this is not
checked, the heater turns off between acquisition sessions.
Warning: The heater plate is hot
when in use and may cause personal
injury. Do not touch the heater plate.
Allow the heater block to cool after
use before touching it.
To have the Luminex XYP automatically retract the plate holder
when you click Start, check the Auto Retract checkbox.
To consistently open a session in single sample mode, check Single Sample Start Acquisition.
To control plate positions, use the controls in the Default Sample
Locations area. If you change these settings, be sure to select a
location that is large enough to hold the amount of sample required
for the command. The reservoir holds up to 3000 µL.
CommandSize of location needed
Sanitize1025 µL
Soak275 µL
Back Flush0 µL
Wash20 0 µL
Alcohol Flush1025 µL
Drain200 µL
Click Apply and OK when you finish changing the options.
SessionsYou must create a session in order to collect assay data. A session is
a folder that contains individual assay data and specified settings.
When you first open a session, the session uses default settings.
These default values reflect calibrated and recommended settings.
There are four ways to create a session:
• use default settings
• use a template
• open an existing session and add new data
• open an existing session and save as a new session.
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Create a Session Using
Default Settings
To create a session using default settings:
1. On the Luminex main window, click N ew Session. The Settings
dialog box opens. The values shown in the General tab are
recommended settings.
Figure 6-7. Settings Dialog Box - General Tab
2. Enter a name for the session in the Description field. Enter your
name in the Operator field. Modify other fields as necessary. A
full description of each of the fields begins on page 6-14. Click
OK.
Create a Session Using a
Template
3. When the analyzer finishes acquiring data, click Save to save the
session under a folder heading of your choice.
To create a session using a template:
1. Click Template on the toolbar to open the Choose a Template
dialog box.
Figure 6-8. Choose a Template Dialog Box
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2. Select the template that you want to use for this session and click
OK. If the template already contains a beadmap (or MAP), the
template defaults to that MAP. If you have not yet selected a
beadmap, this Choose Bead Map dialog box opens:
Figure 6-9. Choose Bead Map Dialog Box
Select the MAP you want to use and click OK. The 100 Region,
50 Region, and 25 Region MAPs are the standard MAPs for
multiple analyte data collection. The Calibrator MAP is available
for system diagnostics. Use the Development MAP only with
development microspheres. Use the NoRegion MAP for system
diagnostics only.
3. In the save current settings dialog box, Type the name of the
session in the New folder field. Select the folder in which you
want to create the session, then click OK.
Figure 6-10. Save Current Settings Dialog Box
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Open and Add to an
Existing Session
To open an existing session and add to it:
1. Click Open on the toolbar. The Open an Existing Session dialog
box opens.
Figure 6-11. Open an Existing Session Dialog Box
2. Double-click the session folder that contains the session that you
want to use. The session information displays in the session
group box. Click OK. The Multiplex Acquisition window opens.
Figure 6-12. Multiplex Acquisition Window
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3. Use the settings shown or modify them, then highlight the first
vacant sample.
4. Click Start to collect the new data; it is added to the established
session.
Open an Existing Session
To open an existing session and save it as a new session:
and Save it as a New
Session
1. Click Open on the toolbar.
2. Choose the session folder and click OK. The established session
appears.
3. Click File on the main menu bar and select Save As, then
rename your session. Use the settings shown or modify the
settings.
4. If you want to keep the settings, but not the data, click the Clear All button.
5. Click Start to collect data for the new session.
TemplatesTemplates contain customized session settings: numbers of events
desired, numbers of runs, panel settings, gates, and other session
information. You can quickly apply these commonly-used settings to
a new session. Templates do not store data, and do not store older
calibration settings. Any session you create from a template contains
the current calibration settings.
This section explains how to create, modify, and delete templates.
Create a Template To create a template:
1. Open an existing session or create a new session.
2. Make desired setting changes. See “Session Settings” on page 6-
14.
3. Click Edit on the main menu bar and select Create Template.
When prompted, supply a name for this template. The software
saves the template in the Templates folder.
Modify a Template To modify a template:
1. Create a new session from the template that you want to modify.
Default templates cannot be changed.
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2. Make desired setting changes. See “Session Settings” on page 6-
14.
3. Click Edit on the main menu bar and select Create Template.
Supply the same name as the loaded template.
4. When prompted to overwrite an existing template, select Yes.
5. Close the session and select No when asked to save changes to
the current session.
Delete a Template To delete a template:
1. Click Tools on the main menu bar and selec t Manage
Templates.
2. Select the template you want to delete and click Delete. Default
templates cannot be deleted.
Multiplex
Acquisition
Use Multiplex Acquisition to analyze individual microsphere
sets. For each microsphere set, the system supplies information
regarding size and fluorescence intensity. The microspheres emit
signals in the classification channels. Use a detection fluorochrome
(reporter) for quantitation. The reporter emits in the RP1 channel.
The Multiplex Acquisition window opens when you click New Session on the Luminex main window. Before you start using the
Luminex software, you should become familiar with the features of
this screen. Check the information to make sure all your settings are
correct before collecting data.
Menu BarThese bars appear at the top of all Luminex software modules. The
title bar shows the Luminex icon and name and indicates the current
session. The main menu bar provides access to software commands
and functions. The menus included are File, Edit, Analyzer, Sample,
Tools, View, and Help.
Figure 6-13. Menu Bar
FileNew. Opens a new session
Template. Opens the Choose Template dialog box. After you select
a template, you are prompted to begin a new session.
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Open. Opens an existing session
Close Session. Closes the current session. Prompts you to save
the session before closing.
Save. Saves the current session.
Save As. Saves the current session under a new name.
Print. Opens the print dialog box. You have the option of printing a
results table, calibration log, bar graph, histogram, and dot plot.
Print Setup. Opens the Print Setup dialog box. Use the settings in
this dialog box to choose printer options.
Exit. Exits the Luminex software. Prompts you to save the current
session before exiting.
EditProject Settings. Opens the Settings dialog box.
Clear Project. Clears the table, graphs, and collected data files in
the open project.
Create Template. Opens the Create Template dialog box.
Reset to Calibrated Settings - . Resets the session to the
previously calibrated settings.
AnalyzerThe Analyzer commands are discussed in detail in Chapter 5.
SampleLoad Data. Loads data to a session.
Start/Cancel. Starts or cancels a session.
Delete Data. Deletes the data in the Multiplex Acquisition window.
Copy. Copies the current information to another file.
ToolsOptions. Opens the Options dialog box.
Manage Templates. Opens the Choose Template to Delete dialog
box.
ViewToolbar. Toggles the toolbar on or off.
System Monitor. Toggles the System Monitor on and off.
Expand/Contract. This command is available when the Multiplex
Acquisition window is open. It toggles the bead gates views on and
off.
Next Window/Previous Window. These commands show the
window related to sequential windows related to sample acquisition.
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HelpContents. Opens the online help.
Search for Help On. Opens a searchable index for the online help.
Luminex on the Web. Opens a web browser window and
navigates to the Luminex website.
About Luminex Data Collector. Provides information about the
Data Collector software.
ToolbarThe toolbar gives easy access to important commands of the main
menu. Each of the commands are listed in the previous section.
Figure 6-14. Toolbar
Main Control and Session
Detail
This section includes session information such as the operator’s
name, session description, and results. The results table shows you
session data as the analyzer acquires the information. Controls on the
Main control and Session detail section include Clear All, Autosize,
Start, and Single.
Double click inside any of the settings boxes
to open the settings dialog box.
Click
between
headings to
resize
Double click a cell
to name the sample.
The cell turns
yellow.
Sample number up to 100 (96 for
XYP); single click to select the cell, or
right click to see a command menu.
Displays the total number of
microspheres counted during
sample analysis.
Double click to make a
comment about the run.
You may see some
automatic comments
here. The cell turns
yellow when active.
Indicates acquisition by
downward movement of
microsphere.
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Clear All: Clears the screen of all data and graphs. This function
deletes all associated files. A confirmation dialog displays when you
click this button to make sure that you intend to delete the table,
graphs, and the data files for the session.
Autosize: Adjusts column widths to fit the data and header sizes.
Statistic: This dropdown list offers a choice of statistic types
displayed in the table. Changing the statistic type does not affect
collected or recorded data.
Trimmed: Select this option to trim the top 5% and bottom 5% of
the collected data.
Prep: Initiates a pre-acquisition mode that allows you to prepare the
instrument for a session. In this mode, data is displayed but not
saved. You can use this function to optimize instrument settings
(such as gates and regions) before beginning a session. There is no
event number to indicate the end of a sample. Acquisition ends when
you click Cancel or when all of the sample is processed.
Note: To avoid the formation of air
bubbles in the cuvette, only click
Start when a sample is present
.
Start: Initiates a sample read. The sample probe lowers, draws
sample out of the well, and retracts to its original position. The
sample moves from the probe to the sample loop. If you click Start
before warming up the analyzer, an automatic 30-minute warmup
phase begins.
If you click Start without a sample present in the well, the analyzer
draws air into the sample loop and injects it into the flow chamber.
As a result, bubbles form in the cuvette and interfere with analysis. If
you click Start without a sample present, complete a 70%
isopropanol or 70% ethanol Alcohol flush cycle, followed by two
distilled water Wash cycles before acquiring further data.
Cancel: When the sample test begins, the Start button becomes a
Cancel button. The sample acquisition ends when you select Cancel
or if the entire sample is analyzed before the desired number of
events has been collected. At the end of sample acquisition the
sample probe lowers, then the syringe pump purges the sample loop
and probe with sheath fluid, sending a fraction of sheath fluid back
into the sample well.
Single: Check this box to run one sample at a time. When you
check the single check box, you need to start each run individually.
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Right-Click MenuOther commands appear on the right-click menu. To open this menu,
right-click any sample cell.
Figure 6-16. Right-Click Menu
Load Data: Displays the data, including histogram and events
information, of a selected (highlighted) sample.
Start/Cancel: Begins or ends data acquisition.
Delete Data: Deletes the data from a selected sample row.
Copy: Copies selectedinformation from the results table to the
Windows clipboard.
Session SettingsClick Settings on the toolbar to see the Settings dialog box. The
Settings dialog box contains two tabs, General and Bead Set. These
settings apply only to the open session.
Figure 6-17. Settings Dialog Box - General Tab
General tabUse the General tab to provide information about the data collection.
Description: Describe the experiment.
Operator: Identify the experimenter.
Events: Enter a number between 1 and 100,000 if you are using total
events, or a number between 1 and 1000 if you are using events per
microsphere set.
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We recommend using at least 100 events per microsphere set. This
guarantees that each bead set selected acquires 100 events before
completing sample acquisition. If each selected bead set does not
acquire this number of events, you see a warning that not enough
bead events were acquired. You can cho ose to keep the data or
disregard it. Because of this option, when selecting bead sets on the
Bead Set tab, you should choose only the bead sets present in your
sample. If you select bead sets that are not present, the analyzer
continues to acquire, trying to reach the number of events per bead
for bead sets that are not in the sample.
If you choose total events instead of events per bead, the analyzer
stops acquiring data as soon as it acquires the specified number of
beads within any combination of bead sets. This means that some
bead sets may not have a minimum number of events.
Override Histogram Gates: Check this box to set known gate
values.
Note: To minimize the chance of
acquiring air, make sure that the
sample acquisition volume is at least
25 µL less than the total volume in
the well.
Min events: Set the minimum events needed for display on the
graphs and results table. When set to a number greater than 0, the
analyzer does not display data for bead sets not generating events
equal to or less than this value. Enter 0 to display all events. The
minimum events must be less than the number you entered in the
events field.
Samples: Enter the number of tubes or wells to be analyzed. The
maximum number of samples you can enter is 96 if you are using an
Luminex XYP, and 100 if you are not using an Luminex XYP.
Sample size: Set this to the amount in µL that you want the analyzer
to take up for each sample. You can enter a number between 10 µL
and 200 µL. We recommend a sample size of 25 µL or larger.
Flow rate: Set the flow rate to Slow, 30 µL/minute; Medium, 45 µL/
minute; or Fast, 60 µL/minute.
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Bead Set tabOn the Bead Set tab you can select and name the appropriate
microsphere sets. Select only microsphere sets that are present in
your samples.
Figure 6-18. Settings Dialog Box - Bead Set Tab
Available: Lists available bead sets for the default beadmap (or
MAP) selected in Options. See page 6-2 for more information. If the
bead set you need is not on the Available list, click Options on the
toolbar and select a different default MAP. If you change the default
MAP for an open session, close the session and open it again to
update the default MAP.
Selected: Displays and describes the bead sets to be used in a
session. The arrow buttons allow you to add or remove bead sets
from the selection (individually or as a group). For example, to select
bead sets, simply click the arrows pointing toward the Selected box.
The single arrow button selects the highlighted bead set, and the
double arrow button selects all of the bead sets. To remove unwanted
bead sets, click the arrows pointing toward the Available box. Select
at least one bead set before running your assay.
If you double click on a bead set in the Available section, the bead
set appears in the Selected section, and vice versa.
Caption: Allows you to label or rename beads to identify the assay
bound to that particular bead set (for example, 909 IgG). First,
highlight the bead set to be renamed. Click in the Caption edit box.
Then type in the new label or name. In the Selected window, the
original numeric designation remains in the first column, and the
corresponding new label or name appears in the second column.
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HistogramThe histogram is located in the lower-left corner of the screen. The
histogram provides a graphical display of the real-time data
collection. An example of a histogram follows:
Figure 6-19. Histogram Example
The Y axis of the graph displays collected events.
To autoscale the Y axis:
Click the up-and-down arrow button shown just above the graph.
To manually set the Y axis scale:
1. Right-click anywhere in the histogram to open the right-click
menu. Select Set scale. The Set Scale dialog box opens.
Figure 6-20. Set Scale Dialog Box
2. Enter the maximum value in the dialog box, and click OK.
To change the X axis parameter:
1. Right-click in the histogram to open the right-click menu.
Figure 6-21. Right-Click X-Axis Menu
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2. Click X axis, then click on the desired parameter name.
If you select reporter 1 for the X axis parameter, the histogram
displays reporter-generated intensity data. The central collected
wavelength is 575 nm. With classification 1 or classification 2, peaks
are based on the emission wavelengths of the classification dyes
inside the microspheres; the central collected wavelengths are 658
nm and 712 nm, respectively. Select Doublet Discriminator to
display data relating to the light-scattering properties of the
microspheres.
GatesAn additional histogram feature is the ability to gate a specific
parameter before data collection. The gate filters graphical displays
and generated statistical data by eliminating particles smaller or
larger than a microsphere. Always set the X axis parameter to
doublet discriminator before setting a gate. Setting a gate on any
other parameter gives inaccurate results. We recommend setting the
gate on the primary peak of the doublet discriminator display,
thereby removing data collected from doublets or contaminants.
Note: The gate that is in effect
when data is collected determines
which values are used in the resu lt.
Applying a gate or changing a gate
for existing data does not change
your calculated values.
Gate
Boundaries
Gate
Numerical
Position
Figure 6-22. Gate Histogram
To set a gate:
1. Set the X axis to Doublet Discriminator.
2. Right-click in the histogram; a pull-down menu appears.
3. Scroll to Gate and follow the arrow to the right.
4. Click Create. Dotted vertical lines appear in the histogram.
5. Use your mouse to drag each line where you want it.
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Use the Show Bead options to set the histogram to show events for
only one bead set, all gated events, or all events.
There are five buttons to the upper right of the histogram:
Auto scale: Automatically adjusts the maximum number of
events shown on the Y axis. Click during acquisition to
readjust the Y axis scale.
Zoom: Enlarges a specific area on the histogram. Use the
cursor and left mouse button to adjust the graph’s range.
Log/linear: Toggles the X axis scale between logarithmic
and linear modes.
Maximize:
Analyzer: Opens the Analyzer dialog box, which shows
calibrated settings for the threshold and RP1 (reporter
channel). You can change the doublet discriminator threshold
and the reporter 1 parameters.
Enlarges the entire histogram frame.
Figure 6-23. Analyzer Dialog Box
AnalyzerThe threshold establishes the minimum doublet detector voltage for
the detection of an event. Proper threshold adjustment removes
background noise contributed by the analyzer or the sample. Unlike a
gate, a threshold value excludes any data below it. The excluded data
does not appear in the table and it is not stored in the run file. A
default threshold value is automatically applied to a new session. We
strongly recommend that you use the default threshold setting.
The RP1 PMT value applies to reporter 1 channel data. Calibration
sets this parameter to a standard value that can be used as a reference
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for later assays or sessions. By increasing this voltage setting, you
may gain sensitivity; however, you may also compromise range.
Decreasing this value has the opposite effect. To return to the
calibrated RP1 setting, click Edit on the main menu bar and select
Reset to Calibrated Settings. We recommend that you use the
calibrated RP1 value.
Bar Graph/Dot Plot
Display
You can toggle between the bar graph and dot plot displays. Each
bead set has a color signal that corresponds with a numeric
designation called the Bead ID.
In the bar graph view, the bead sets you selected in the Settings
dialog box appear on this graph along the Y axis. The X axis shows
progress as the data is collected in the form of a count or a result.
You can change which of these two values appears.
Figure 6-24. Bead Set Graph
The dot plot view gives a real-time, two-parameter display of the
accumulating data. Each event is shown as a tiny dot. When you
select the dot plot display, the Density Dot Plot button and
Decaying Dot Plot button activate.
Figure 6-25. Density and Decaying Dot Pl ot Buttons
Use these buttons to view a density dot plot or decaying dot plot. A
density dot plot shows a constant accumulation of events. Increasing
6 - 20PN 89-00002-00-150 Rev. A
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density is indicated by contrasting colors. A decaying dot plot shows
the 100 most recent events acquired by the Luminex analyzer.
Figure 6-26. Dot Plot Display
In the upper right corner of the frame, four buttons let you control the
display:
Count/Result: Switches the display between count and
result. This is either a count of the number of events
collected for the bead ID, or an RP1 intensity result. The
result is the median value for the events.
Switch to Dot Plot: Switches the display between the
bar graph and dot plot.
Show all: Shows the bead IDs (001, 002, 003, ...100
instead of 010, 020, 030, ...100). The Maximize button
makes the display easier to read.
Zoom: Enlarges a specific area on the display.
Lin/Log: Switches the dot plot display between a linear
and logarithmic view.
Maximize/minimize: Enlarges the entire histogram
frame, or returns it to its smaller size.
Bead details. You can view information about a specific bead set
by clicking the bar for that bead set, or by clicking the Y axis
position for that bead set. This brings up a Bead details dialog box
for that specific bead ID, showing the bead ID, the bead name, and
the count (number of events for that bead). A density plot shows how
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the beads are hitting with respect to their region. The beads should
hit within the white region shown. The colored dots show where the
beads actually hit.
Figure 6-27. Bead Details Box
This display can be useful in troubleshooting problems. See the
“Troubleshooting” chapter on page 8-1 for examples. If the beads do
not register properly during sample analysis, recalibrate the Luminex
analyzer.
System MonitorThe system monitor is an information bar on the right side of the
screen. It shows the status of the Luminex analyzer.
Shows current system status and warnings.
Shows temperature in degrees Celsius,
pressure in pounds per square inch, and high
voltage status during operation and while idle.
Shows total events, gated events,
and region events.
Shows rate of bead acquisition.
Shows events per microliter based
upon the selected flow rate.
Shows XYP status.
Shows XYP temperature. When the number is
red, the system has not stabilized at the set
point temperature. Wait for it to turn green
before you start collecting data. The heater
temperature does not display if the heater is off.
Figure 6-28. System Status Bar
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The message at the top reflects the current status of the Luminex
analyzer.
Ready: Indicates that the Luminex analyzer is ready to collect data.
Pressure: Pressure normally displays during a routine pressure
check at the beginning of each run. However, if the pressure message
remains for more than 1.5 minutes, a lack of pressure exists in the
system. Check for the following problems:
•Low sheath fluid
•Loose hose connections
•Loose cap on sheath fluid bottle.
•Leak in sheath fluid container, tubing, or bubble trap
Not Ready: Normally indicates that the analyzer is initializing.
Busy: Indicates an intermediate state between Standby and Ready.
Standby: Shows that the flow of sheath fluid stopped; the system is
idle.
Bad Link: The communication between the analyzer and the
computer is not working. Check that:
•The analyz er is po we re d on.
•The cables between the analyzer communications port and
computer are properly installed.
If the situation has been corrected, restart the Luminex software
application to reinitialize this link.
Warm Up: Indicates a 30-minute warmup of the analyzer’s optics.
While powered, the optics remain active for four hours after each
acquisition.
Running: Indicates that the Luminex analyzer is collecting data.
Sample empty: Indicates an empty sample syringe. The system
automatically cancels data collection and adds a comment in the
notes section.
Connect: Indicates that the communication between the analyzer
and the computer was broken, then re-established. You must restart
the Luminex software application to reinitialize communication
links.
Sheath fluid: Indicates empty sheath fluid. Fill the sheath fluid
container before continuing.
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The system monitor section also shows information about
temperature, pressure, voltage, and events. Air pressure generally
runs a little higher than sheath pressure. It is normal to see a drop in
pressure if several minutes elapse between sample runs. Information
in the calibration box of the systems monitor, which appears when no
session is open, is shown for the last successful calibration. Normal
readings for these parameters are shown in the table below. If poststabilization readings deviate from normal readings, call Luminex for
technical support.
ParameterNormal reading
DD TempBetween ambient temperature and 5°C
above ambient temperature
d Cal Temp (delta
calibration
temperature, how
far away the current
temperature is from
the temperature of
the last calibration)
Air Pressure6 - 9 psi after system stabilization
Sheath Pressure6 - 9 psi after system stabilization
Hi Voltage200 ± 20 during acquisition, 10 while idle
Status Bar
This section displays the acquisition time and status. It also lists the
session’s file path.
Data Collection To collect data:
Note: For optimal sampling
efficiency and to reduce matrix
effects, concentrated biological
fluids such as serum or plasma
should be diluted at least 1:5.
1. Make sure the analyzer has been warmed up and calibrated. See
the calibration section beginning on page 5-2 for more
information about calibration. Your startup routine may also
include priming, flushing with alcohol, and washing.
0 ± 3°C
Note: If the d Cal Temp falls outside this
range, recalibrate the analyzer.
Figure 6-29. Status Bar
2. Create a session. See page 6-5 for more information.
3. Make any changes needed to the session settings.
4. Prepare your assay samples.
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5. In the results table of the new session, highlight the sample
where you want to begin collecting data.
6. Click Start. You can see the progress of data collection on the
histogram and the bar graph. Make sure that the Single box
remains unchecked for continued sample acquisition.
7. After the analyzer finishes collecting data, select Save on the
File menu. The analyzer saves your data in the session folder
you selected when you created the session.
Run an Entire Plate of
Samples
Note: Ensure that the sample
needle height is adjusted to the
96-well plate in use. See page 7-9
To run an entire plate:
1. Create the session for this run.
2. Click Eject from the toolbar to eject the plate holder.
3. Place a 96-well microtiter plate on the plate holder.
4. Click Retract from the toolbar to retract the plate holder.
5. Click Settings and make sure the number of samples is set to 96,
then click OK.
Figure 6-30. Settings Dialog Box
6. On the results table in the acquisition screen, highlight the row
for the first sample.
7. Click Start on the main control screen. The Luminex 200 automatically reads the entire plate of samples.
Note: If the Single box is checked, the software pauses between
samples. Click OK to continue acquiring sample.
8. After all samples have been read, click Eject from the toolbar to
eject the plate holder.
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9. Remove the microtiter plate from the plate holder.
10. Click Retract from the toolbar to retract the plate holder.
Run a Range of SamplesYou can run a specific range of samples, as demonstrated in the
highlighted samples shown below.
1 2 3 4 5 6 7 8 9 10 11 12
A
B
C
D
E
F
G
H
Figure 6-31. Sample Plate with Row of Sa mp le s
To run a range of samples on a plate, follow these steps:
1. Create the session for this run.
2. Click Eject from the toolbar to eject the plate holder.
3. Place a 96-well microtiter plate on the plate holder.
4. Click Retract from the toolbar to retract the plate holder.
5. Click Settings and set the number of samples to the number of
the last sample that you want to read, then click OK.
To find the number of the last sample, start counting with well
A1, and count down an entire column. Then move to the next
column. For the example shown, you would set the number of
samples to 15.
6. On the results table part of the acquisition screen, select the sample where you want to begin collecting sample. For the example
shown, you would highlight well D2.
7. Click Start on the main control screen.
The Luminex analyzer automatically reads the range of samples
beginning with the selected sample.
8. After the samples have been read, click Eject from the toolbar to
eject the plate holder.
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9. Remove the microtiter plate from the plate holder.
10. Click Retract from the toolbar to retract the plate holder.
Run a Single Sample To run a single sample:
1. Click Eject from the toolbar to eject the plate holder.
2. Place a 96-well microtiter plate on the plate holder.
3. Click Retract from the toolbar to retract the plate holder.
4. On the results table part of the acquisition screen, select the sample that you want to read.
5. Check the Single checkbox below the start button on the main
control screen.
6. Click Start on the main control screen. The Luminex 200 reads
just the selected sample.
Interrupt a Run
Between SamplesThe Single checkbox becomes accessible for several seconds
During Sample
Acquisition
7. Click Eject from the toolbar to eject the plate holder.
8. Remove the microtiter plate from the plate holder.
9. Click Retract from the toolbar to retract the plate holder.
To interrupt a run while the system acquires a sample:
1. Click Cancel. Sampling stops after you click Cancel, and a window pops up asking if you want to acquire the next sample. If
you click Yes, sampling proceeds with the next sample. Click No
to stop the session completely.
2. To continue acquiring sample, highlight the sample with which
you want to resume sampling with and click Start.
between samples. Click the Single checkbox. The software then
pauses between acquiring the next sample run.
Click OK to continue acquiring the next sample.
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To interrupt sample acquisition between sample runs:
1. Click Cancel. Sampling stops after you click Cancel.
2. Click OK to continue acquiring the next sample.
Reports You can print the results table or histogram from any session.
To print reports:
Note: The analyzer does not
support printing with the Windows NT operating system.
1. Load the desired data.
2. Click File on the main menu bar and select Print. The Print
dialog box opens.
Figure 6-32. Print Dialog Box
Selecting both histogram and bar graph activates the Single Page
option.
3. Choose the type of report, and click OK.
To print session results to a text file:
1. On the Open the Windows Start menu (located on the lower left
corner of the screen). Select Settings > Printers. The Printers
window opens.
2. Double click Add Printer. The Add Printer Wizard opens.
3. Click Next to begin the install.
4. In the second page of The Add Printer Wizard, select Local
Printer. Deselect the Automatically detect option. Click Next.
5. In the Select the Printers Port window of the Add Printer Wizard,
select LPT1.
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6. In the Manufacturers List, click Generic. In Printers list, click
Generic/Text Only.
7. Click OK throughout the rest of the windows.
8. You can now open repo rt pages in Notepad, then print them to
this printer.
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6 - 30PN 89-00002-00-150 Rev. A
7
Maintenance and Cleaning
Warning: When analyzing
potentially infectious biological
samples on the Luminex analyzer ,
follow proper biosafety
procedures. These safety
precautions should also be taken
when cleaning or maintaining the
Luminex analyzer.
Proper maintenance and cleaning of the Luminex analyzer should be
performed in order to preserve the analyzer’s longevity and
reliability.The maintenance log at the end of this chapter will help
you to keep track of when maintenance procedures are performed. It
lists and defines the frequency of each task.
This section describes the following maintenance procedures:
•Startup
•Shutdown
• Check Fluid Levels
• Check for Leaks
• Calibrate
• Sanitize
• Clean Accessible Surfaces
• Clean Sample Probe
• Replace Air Intake Filterss
• Replace Syringe Seal
• Clean Luminex Analyzer Ventilation Filter
• Change Sheath Filter
• Change Sheath Quick-disconnect O-rings
• Change Fuses
• Adjust Sample Probe Vertical Height
• Storing the Analyzer
• Decontaminating the Luminex Analyzer for Return Sh ipment
D
ONOTREMOVETHEANALYZERCOVER!
PN 89-00002-00-150 Rev. A7 - 1
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Startup Perform the entire startup procedure on a daily basis.
Note: There is NO sensor to warn
you of low sheath fluid levels. Fill
the sheath fluid container before
the level reaches the sheath outlet
line. There is NO indicator light to
warn you of high waste volume.
Empty the waste container each
time you fill the sheath container.
1. Turn on the analyzer and PC.
2. Click Warmup.
3. While you are waiting for the analyzer and optics system to
warm up - about 30 minutes - check the levels of sheath fluid and
waste fluid. Check that the sheath container cap is tight.
4. Prime the system.
5. Perform an Alcohol Flush with 70% isopropanol or 70%
ethanol.
6. Wash twice with distilled water or sheath fluid. For optimal
performance, Calibrate the system and then Wash four times
with distilled water. See page 5-2 for more information about
calibration.
Shutdown Perform the shutdown procedure when you finish running
samples.
1. Dispense 1.2 mL of a fresh 10%-20% bleachsolution into the
Luminex XYP reservoir. Run a Sanitize command.
2. Run the Wash command twice with distilled water.
3. Run a Soak command with distilled water.
4. Raise the sample probe.
5. Click Eject on the toolbar to eject the plate holder.
6. Remove the microtiter plate and the reservoir.
7. Clean the plate holder and reservoir with a 10%-20% bleach
solution.
8. Replace the reservoir, then click Retract on the toolbar to retract
the plate holder.
9. Loosen the sheath fluid container cap to release pressure in the
system.
10. Turn the analyzer and PC off.
7 - 2PN 89-00002-00-150 Rev. A
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Check Fluid LevelsCheck the sheath and waste fluids daily, more often if you run
several samples. Replace the sheath fluid and empty the waste
container as needed. You must manually monitor the sheath fluid and
waste container levels. Release the Luminex analyzer’s pressure by
removing the lid from the sheath fluid container. Add sheath fluid,
filling the sheath fluid container to just below the air intake. Discard
waste by appropriate means. After you add sheath fluid and discard
the waste, remove air from the lines by clicking Prime until no more
air shows in the lines.
USE OF NON-LUMINEX APPROVED SHEATH FLUID
SHALL CONSTITUTE “IMPROPER USE” AND MAY VOID
WARRANTY RIGHTS PROVIDED BY LUMINEX AND/OR
ITS AUTHORIZED PARTNER.
Check for Leaks Check for leaks on a weekly basis.
Note: In the event of a leak or spill
inside the analyzer, make sure the
power to the system is off and that
the power cord is disconnected
from the wall source.
Open all analyzer doors and visually inspect for leaks. If you see a
leak or spill, contact Luminex Corporation. Users in the U.S. and
Canada can call 1-877-785-BEAD (1-877-785-2323) between the
hours of 7:00 a.m. and 7:00 p.m. Central Time, Monday through
Friday. Users outside of the U.S. and Canada can call us at +1 512381-4397 between the hours of 7:00 a.m. and 7:00 p.m. Central
Time, Monday through Friday. Inquiries may also be sent by email to
support@luminexcorp.com.
CalibrateCalibrate at least monthly during routine use. Follow the instructions
beginning on page 5-2.
Sanitize You should sanitize the system on a monthly basis and every
time you run biological samples.
1. Perform four Wash cycles using distilled water.
2. Dispense 1.2 mL of a fresh 10%-20% bleachsolution into a
sample tube. Place the tube into the sample tube holder, and
begin the Sanitize cycle.
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Clean Accessible
Surfaces
Clean the exterior surfaces of the Luminex 200 system on a
monthly basis, or more often if you are running biological samples.
1. Turn off the power switch on the rear of the Luminex analyzer.
2. Unplug the analyzer power cord from the wall source.
3. Wipe all exterior surfaces with mild germicidal detergent,
followed by a 10%-20% bleach solution.
4. Open the front doors of the analyzer and clean all accessible
surfaces with detergent followed by a 10%-20% bleach solution.
5. Clean the Luminex XYP reservoir and plate holder with a 10%20% bleach solution.
6. Dry the sheet metal surfaces to prevent corrosion.
Clean Sample Probe Clean the sample probe on a weekly basis, or whenever you
suspect that it may be clogged.
1. Remove the sample probe as follows: Unsnap the light housing
located above the probe. Unscrew the Cheminert fitting that
holds the sample probe in place. Gently grasp the probe and push
up. Remove the sample probe out of the top of the sample arm.
Warning: Be sure that the
system is not operating when you
remove the sample probe.
Note: The sample probe should
slide up easily while removing it
from the sample arm. If you feel
resistance, do not force the
probe up. Contact Technical
Support.
2. Use a bath sonicator or 10 mL syringe to clean the sample probe.
If you are using a sonicator, place the smaller end of the sample
probe in the sonicator for 2-3 minutes. If you are using a syringe,
force 10%-20% bleach through the larger end of the sample
probe.
3. Replace the sample probe and adjust the vertical height.
4. Perform the following commands:
• Three Back flushes
• Three Drain commands
• Two Alcohol Flushes using 70% isopropanol or 70% ethanol.
• Three Washes with distilled water.
7 - 4PN 89-00002-00-150 Rev. A
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Replace Air Intake
Filters
Note: Hold on to the tubing! Do
not allow the tubing to fall inside
the analyzer.
You should replace the filters on the Luminex analyzer and Luminex
XYP every six months.
To replace the air intake filter on the Luminex analyzer:
1. Turn off the power switch on the rear of the Luminex analyzer,
then unplug the power cord from the wall source.
2. On the back of the Luminex analyzer, remove the thumb-screw
at the top of the air intake filter access door.
3. Pull the access door off of the Luminex analyzer.
4. Pull the filter out from the unit, about three or four inches.
5. Grasp the tubing. Remove the filter with one hand, and hold the
tubing with the other hand.
6. Connect a new filter to the tubing.
7. Put the filter inside the panel, then reattach the panel door.
Figure 7-1. Rear of Luminex analyzer, Air Filter Exposed
To replace the Luminex XYP Air Intake Filter:
1. Disconnect the Luminex XYP from ac power by turning off the
power switch on the rear of the instrument, then unplug the
power cord from the wall source.
2. On the back of the instrument, to the left side, gently remove the
screen from the filter. Do not remove the screws.
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Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Figure 7-2. Back of Luminex XYP, Removing Air Filter
3. Replace the filter and replace the screen.
4. Plug in and turn on the Luminex XYP.
Replace Syringe Seal Replace the syringe plunger seal every 6 months.
Warning: The syringe arm does
not deactivate when changing
the plunger; injury could result if
the system is not unplugged.
1. Turn off and unplug the Luminex analyzer.
2. Open the center door on the front of the Luminex analyzer.
3. Unscrew the knob on the syringe arm at the bottom of the
syringe, and forcefully push the syringe arm down.
4. Unscrew the syringe from the top of its housing; pull the plunger
out of the syringe.
5. Remove and replace the plunger seal.
6. Return the plunger to the syringe.
7. Screw the syringe back into the top of its housing.
8. Return the syringe arm to its original position, and hand-tighten
the screw on the syringe arm.
9. Plug in the power cord and turn the Luminex analyzer on.
10. Prime the Luminex analyzer 5 times and watch for any leaks in
the syringe area.
11. When finished, close the center door.
7 - 6PN 89-00002-00-150 Rev. A
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1
2
1. Syringe Seal 2. Syringe
Figure 7-3. Front of Luminex 200 Analyzer, Access Door Opened
Clean Luminex
Analyzer V entilation
Filter
Change Sheath
Filter
Check the Luminex analyzer ventilation filter every 6 months.
Clean the filter only when soiled.
1. Turn off the Luminex analyzer at the power switch.
2. Unplug the power cord from the wall source.
3. On the bottom of the unit on the left side, push the filter out
toward the right side.
4. Grasp the filter and pull it out from underneath the Luminex
analyzer.
5. If the filter is dirty, clean it with a vacuum cleaner or in running,
distilled water. Stand it upright to air-dry.
6. Reinstall the filter with the arrows facing up.
Change the sheath filter once a year.
1. Disconnect the sheath fluid bottle
2. Squeeze the metal quick release connections at both ends of the
filter assembly, then pull the tubing away from the filter
assembly.
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3. Connect the new sheath filter, matching up the color-coded
fittings. The arrow on the sheath filter should point up.
4. Reconnect the sheath fluid bottle.
5. Prime the instrument 5 times to remove any air introduced into
the system.
Change Sheath
Quick-disconnect
O-rings
Figure 7-4. Sheath Fluid Filter
Change the sheath quick-disconnect o-rings as necessary.
1. Turn off the Luminex analyzer at the power switch.
2. Remove the quick-disconnect fitting that has the faulty o-ring.
3. Use a small flat-head screwdriver to remove the worn out o-ring.
4. Place the new o-ring over the tip of a pair of closed needle-nose
pliers.
5. Gently separate the tips of the pliers to stretch the o-ring just
enough to fit it over the top of the quick-disconnect.
6. Slide the o-ring over the quick disconnect, then remove the
pliers.
7 - 8PN 89-00002-00-150 Rev. A
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Change Fuses To replace fuses on the Luminex analyzer or the Luminex XYP
instrument.
1. Turn off the power switch on both the Luminex analyzer and the
Luminex XYP.
DANGER! To avoid serious injury
or death by electric shock, you
must turn off the system and
unplug it from the wall outlet.
2. Unplug the power cord from the analyzer or instrument,
depending on which fuses you are changing.
3. Use a small, flathead screwdriver to open the power module door.
See Figure 7-6.
4. Remove the red cartridge. Check both fuses for damage.
5. Replace damaged fuses with Luminex CN-0019-01, ordered
through Luminex.
6. Push the cartridge back into the power module, then push the
power module door back into place.
Power Module Door
Figure 7-5. Power Module
Adjust Sample
Probe Vertical
Height
PN 89-00002-00-150 Rev. A7 - 9
The vertical height determines how far the sample probe goes into
the sample tube or sample well when aspirating a sample. It is set
when the Luminex analyzer is shipped. Readjust the vertical
alignment any time the instrument is moved, the probe is removed or
replaced, the type of plate you are running changes, or any time
sample acquisition is slow or sporadic. To adjust the sample probe
vertical height, refer to “Adjusting the Sample Probe Height” on
page 4-4.
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
Storing the Analyzer To prepare the system for storage:
1. Run a Sanitize command with 10% to 20% household bleach
solution.
2. Run a Sanitize command with distilled water.
3. Run four Wash commands with distilled water.
4. Remove the sample probe from the instrument, flush with
distilled water from the narrow end out through the larger end,
replace it in the sample arm and wrap the end with Parafilm.
To prepare the system for first use after it has been in storage:
1. Turn on the Luminex 200 and XY Platform and watch for the
following indications that the instruments are responding
correctly:
• The light above the sample probe on the Luminex 200 and the
light next to the door of the XY platform are lit.
• The compressor starts in the Luminex 200. It is a low
rumbling sound.
• Place your hand behind the Luminex 200 to feel air coming
out of the rear fan. Place your hand on the left side of the XY
to feel air coming out of the XY.
• Observe movement of the syringe inside the front middle door
of the Luminex 200 shortly after the instrument is powered on.
2. Turn on the PC and start up the LDS software.
3. Complete a Warmup command, which will take 30 minutes.
4. Remove the Parafilm from the end of the sample probe.
5. After Warmup is complete, run three Back Flush commands,
three Drain commands, two Alcohol Flush commands, and three
Wash commands with distilled water. Make sure that the sheath
bottle or Luminex SD has a sufficient amount of sheath fluid and
that the waste container is empty. Verify that the pressure during
each of the maintenance commands reads between 6 and 9 psi in
the Device section on the right side of the LDS 1.7 software
window.
7 - 10PN 89-00002-00-150 Rev. A
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Decontaminating
the Luminex
Analyzer for Return
Shipment
Note: It is the user’s
responsibility to
decontaminat e the
analyzer before
shipment.
Luminex Technical Support will give you a Return Material
Authorization (RMA) number if they direct you to return the system.
They will explain how to return the system according to Luminex
procedures.
The accessible surfaces and the internal fluidics system must be
sanitized and decontaminated before returning the analyzer. This is
particularly important when biohazardous samples have been run.
Make a copy of this page to fill out and return with the system.
Complete the following checklist, signed and dated, and return it
with the Luminex analyzer.
1.Remove all specimens, disposables, and reagents from the system.
2.Disconnect the SD system, if present, and the sheath line going from
the SD system to the analyzer.
3.Connect a sheath bottle filled with a solution of 10% to 20% household
bleach to the analyzer.
4.Sanitize the system using the Sanitize command on the main screen of
the system. Follow this by washing twice with distilled water.
5.Disconnect the system from AC power by turning off the power switch
on the rear of the system, then unplugging the analyzer power cord
from the wall source.
6.Disconnect and drain the sheath fluid and waste containers.
7.Rinse the waste container with 10% to 20% household bleach solution
and drain.
8.Wash all exterior surfaces with a mild detergent, followed by a 10% to
20% household bleach solution.
9.Open the front doors of the analyzer. Clean all accessible surfaces with
mild detergent followed by a 10% to 20% household bleach solution.
10. Pack the system within a biohazard bag, place it in the corrugated box,
then insert it in its original packaging or an approved shipping
container. Attach this checklist to the top of the corrugated box prior to
packaging in the crate.
Was there an internal leak in the system? Yes No
Print Name:
Signature:
Date: Instrument Serial No.
PN 89-00002-00-150 Rev. A7 - 11
Luminex 200 User Manual for LDS Version 1.7xMAP Technology
7 - 12PN 89-00002-00-150 Rev. A
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