IEI Technology WAFER-LX3, WAFER-LX3-800-256 MB, WAFER-LX3-800 W-256 MB, WAFER-LX3-800-512 MB, WAFER-LX3-800 W-512 MB User Manual

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WAFER-LX3 3.5" Motherboard
MODEL:
WAFER-LX3
3.5" ETX Motherboard with AMD Geode LX 800 CPU VGA, LVDS, TTL, Dual LAN, USB 2.0, Audio, PC/104
Fanless and Onboard Memory
User Manual
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WAFER-LX3 3.5" Motherboard

Revision

Date Version Changes
7 January, 2009 2.00 Wide temperature range changed to –40ºC~85ºC
BIOS changed to AMI Super I/O changed to SMSC SCH3114
30 August, 2007 1.00 Initial release
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WAFER-LX3 3.5" Motherboard
COPYRIGHT NOTICE
The information in this document is subject to change without prior notice in order to improve reliability, design and function and does not represent a commitment on the part of the manufacturer.
In no event will the manufacturer be liable for direct, indirect, special, incidental, or consequential damages arising out of the use or inability to use the product or documentation, even if advised of the possibility of such damages.
This document contains proprietary information protected by copyright. All rights are

Copyright

reserved. No part of this manual may be reproduced by any mechanical, electronic, or other means in any form without prior written permission of the manufacturer.
TRADEMARKS
All registered trademarks and product names mentioned herein are used for identification purposes only and may be trademarks and/or registered trademarks of their respective owners.
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WAFER-LX3 3.5" Motherboard

Packing List

NOTE:
If any of the components listed in the checklist below are missing, please do not proceed with the installation. Contact the IEI reseller or vendor you purchased the WAFER-LX3 from or contact an IEI sales representative directly. To contact an IEI sales representative, please send an email to
The items listed below should all be included in the WAFER-LX3 package.
1 x WAFER-LX3  1 x IDE 44p/44p flat cable  1 x RS-232/422/485 cable  1 x Keyboard and mouse Y-cable  1 x Audio cable  1 x USB cable  1 x Mini jumper pack  1 x Utility CD  1 x QIG (quick installation guide)
Images of the above items are shown in Chapter 3.
sales@iei.com.tw.
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WAFER-LX3 3.5" Motherboard

Table of Contents

1 INTRODUCTION.......................................................................................................... 1
1.1 INTRODUCTION........................................................................................................... 2
1.2 MODELS..................................................................................................................... 2
1.3 FEATURES................................................................................................................... 3
1.4 OVERVIEW.................................................................................................................. 3
1.5 PERIPHERAL CONNECTORS AND JUMPERS .................................................................. 5
1.6 TECHNICAL SPECIFICATIONS ...................................................................................... 6
2 DETAILED SPECIFICATIONS .................................................................................. 9
2.1 DIMENSIONS............................................................................................................. 10
2.2 DATA FLOW...............................................................................................................11
2.3 AMD
2.3.1 Memory Support............................................................................................... 13
2.3.2 Display Support ............................................................................................... 14
2.3.3 Power Management......................................................................................... 14
2.3.4 GeodeLink™ Interface Unit............................................................................. 15
2.4 AMD
2.4.1 IDE Controller................................................................................................. 16
2.4.2 Audio Codec 97 (AC’97) Controller................................................................ 16
2.4.3 Flash Interface................................................................................................. 16
2.4.4 USB Controller ................................................................................................ 16
2.4.5 Real Time Clock ............................................................................................... 16
2.4.6 PCI Bus............................................................................................................ 16
®
GEODE LX 800 500 MHZ CPU................................................................ 12
2.3.2.1 VGA.......................................................................................................... 14
2.3.2.2 TTL ........................................................................................................... 14
2.3.2.3 LVDS ........................................................................................................ 14
®
GEODE CS5536 SYSTEM CHIPSET............................................................ 15
2.4.6.1 Intel® 82551ER PCI Ethernet Controller................................................. 17
2.4.6.2 PCI to ISA Bridge..................................................................................... 17
2.5 LPC BUS COMPONENTS ........................................................................................... 17
2.5.1 BIOS Chipset.................................................................................................... 18
2.5.2 SMSC SCH3114 Super I/O chipset .................................................................. 18
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2.5.2.1 Hardware Monitor Functions.................................................................... 18
2.5.2.2 UART Controller....................................................................................... 18
2.5.2.3 Parallel Port............................................................................................... 19
2.5.2.4 Floppy Disk Drive Controller (Optional) ................................................. 19
2.5.2.5 Keyboard and Mouse Controller............................................................... 19
2.5.2.6 GPIO Ports................................................................................................ 19
2.5.2.7 Fan Speed and Fan Control....................................................................... 20
2.6 ENVIRONMENTAL AND POWER SPECIFICATIONS ....................................................... 20
2.6.1 Operating Temperature and Temperature Control........................................... 20
2.6.2 Power Consumption......................................................................................... 20
3 UNPACKING............................................................................................................... 21
3.1 ANTI-STATIC PRECAUTIONS...................................................................................... 22
3.2 UNPACKING.............................................................................................................. 22
3.2.1 Unpacking Precautions.................................................................................... 22
WAFER-LX3 3.5" Motherboard
3.3 UNPACKING CHECKLIST........................................................................................... 23
3.3.1 Package Contents............................................................................................. 23
3.4 OPTIONAL ITEMS...................................................................................................... 24
4 CONNECTOR PINOUTS........................................................................................... 25
4.1 PERIPHERAL INTERFACE CONNECTORS..................................................................... 26
4.1.1 Layout .............................................................................................................. 26
4.1.2 Peripheral Interface Connectors ..................................................................... 27
4.1.3 External Interface Panel Connectors............................................................... 28
4.2 INTERNAL PERIPHERAL CONNECTORS...................................................................... 29
4.2.1 ATX Power Button Connector.......................................................................... 29
4.2.2 ATX Power Input Connector............................................................................ 29
4.2.3 ATX Power Supply Enable Connector............................................................. 30
4.2.4 Audio Connector (10-pin)................................................................................ 31
4.2.5 Backlight Inverter Connector .......................................................................... 32
4.2.6 Battery Connector............................................................................................ 33
4.2.7 CompactFlash® Socket.................................................................................... 34
4.2.8 Fan Connector (+5 V, 3-pin)............................................................................ 36
4.2.9 Floppy Disk Connector (26-pin)...................................................................... 37
4.2.10 GPIO Connector............................................................................................ 38
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4.2.11 HDD Connector(44-pin) ................................................................................ 39
4.2.12 Keyboard/Mouse Connector.......................................................................... 40
4.2.13 LCD LVDS Connector ................................................................................... 41
4.2.14 LED Connector.............................................................................................. 42
4.2.15 Print Connector ............................................................................................. 43
4.2.16 PC/104 Slot.................................................................................................... 44
4.2.17 PC/104 Power Input Connector..................................................................... 46
4.2.18 Reset Button Connector ................................................................................. 47
4.2.19 Serial Port Connector (COM3) ..................................................................... 48
4.2.20 Serial Port Connector (COM2:RS-232, COM4:RS-422/485)....................... 49
4.2.21 TFT LCD Connector ...................................................................................... 50
4.2.22 USB Connector (Internal).............................................................................. 51
4.3 EXTERNAL PERIPHERAL INTERFACE CONNECTOR PANEL ......................................... 52
4.3.1 LAN Connectors............................................................................................... 53
4.3.2 Serial Port Connector...................................................................................... 54
4.3.3 USB Connector ................................................................................................ 55
4.3.4 VGA Connector................................................................................................ 55
5 INSTALLATION ......................................................................................................... 57
5.1 ANTI-STATIC PRECAUTIONS...................................................................................... 58
5.2 INSTALLATION CONSIDERATIONS.............................................................................. 59
5.2.1 Installation Notices.......................................................................................... 59
5.2.2 Installation Checklist....................................................................................... 60
5.3 UNPACKING.............................................................................................................. 61
5.3.1 Unpacking Precautions.................................................................................... 61
5.3.2 CF Card Installation........................................................................................ 61
5.4 JUMPER SETTINGS .................................................................................................... 63
5.4.1 AT Power Select Jumper Settings..................................................................... 63
5.4.2 CF Card Setup ................................................................................................. 64
5.4.3 Clear CMOS..................................................................................................... 65
5.4.4 COM 1/2 Pin 9 Setting Jumper........................................................................ 66
5.4.5 LCD Panel Shift Clock Setting......................................................................... 67
5.4.6 LCD Voltage Selection..................................................................................... 68
5.4.7 RS-422/485 Serial Port Select Jumper ............................................................ 69
5.5 CHASSIS INSTALLATION............................................................................................ 70
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5.5.1 Airflow.............................................................................................................. 70
5.6 INTERNAL PERIPHERAL DEVICE CONNECTIONS........................................................ 71
5.6.1 Peripheral Device Cables................................................................................ 71
5.6.2 ATA Flat Cable Connection ............................................................................. 71
5.6.3 Keyboard/Mouse Y-cable Connector ............................................................... 72
5.6.4 Parallel Port Cable without Bracket ............................................................... 74
5.6.5 Dual RS-232 Cable Connection (w/o bracket) ................................................ 75
5.6.6 USB Cable (Dual Port without Bracket) ......................................................... 76
5.7 EXTERNAL PERIPHERAL INTERFACE CONNECTION ................................................... 77
5.7.1 LAN Connection (Single Connector)............................................................... 78
5.7.2 Serial Device Connection ................................................................................ 78
5.7.3 USB Device Connection (Single Connector)................................................... 79
5.7.4 VGA Monitor Connection ................................................................................ 80
6 BIOS.............................................................................................................................. 82
WAFER-LX3 3.5" Motherboard
6.1 INTRODUCTION......................................................................................................... 83
6.1.1 Starting Setup................................................................................................... 83
6.1.2 Using Setup...................................................................................................... 83
6.1.3 Getting Help..................................................................................................... 84
6.1.4 Unable to Reboot After Configuration Changes.............................................. 84
6.1.5 BIOS Menu Bar................................................................................................ 84
6.2 MAIN........................................................................................................................ 85
6.3 ADVANCED............................................................................................................... 86
6.3.1 CPU Configuration.......................................................................................... 88
6.3.2 IDE Configuration........................................................................................... 89
6.3.2.1 IDE Master, IDE Slave............................................................................. 91
6.3.3 Floppy Configuration....................................................................................... 96
6.3.4 Super IO Configuration ................................................................................... 97
6.3.5 Hardware Health Configuration.................................................................... 100
6.3.6 Remote Configuration.................................................................................... 104
6.3.7 USB Configuration......................................................................................... 108
6.3.8 IT8888 Configuration .................................................................................... 109
6.3.8.1 ISA Decode IO Spaces.............................................................................114
6.3.8.2 ISA Decode Memory Spaces ...................................................................116
6.3.9 Power Configuration.......................................................................................118
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WAFER-LX3 3.5" Motherboard
6.4 PCI/PNP..................................................................................................................118
6.5 BOOT...................................................................................................................... 121
6.5.1 Boot Settings Configuration........................................................................... 122
6.5.2 Boot Device Priority...................................................................................... 123
6.5.3 Hard Disk Drives........................................................................................... 124
6.5.4 CD/DVD Drives............................................................................................. 125
6.5.5 Removable Drives.......................................................................................... 126
6.6 SECURITY............................................................................................................... 128
6.7 CHIPSET ................................................................................................................. 129
6.7.1 Video Configuration....................................................................................... 130
6.8 EXIT....................................................................................................................... 132
7 DRIVER INSTALLATION....................................................................................... 134
7.1 AVAILABLE SOFTWARE DRIVERS ............................................................................ 135
7.2 OPEN THE DEVICE MANAGER IN WINDOWS........................................................... 135
7.3 VGA DRIVER INSTALLATION.................................................................................. 140
7.4 AUDIO DRIVER INSTALLATION ............................................................................... 147
7.5 ETHERNET DRIVER INSTALLATION......................................................................... 154
7.6 ENTERTAINMENT ENCRYPTION/DECRYPTION CONTROLLER ................................... 161
7.7 OTHER PCI BRIDGE DEVICE CONTROLLER ............................................................ 168
A BIOS OPTIONS ........................................................................................................ 176
B TERMINOLOGY...................................................................................................... 180
C DIGITAL I/O INTERFACE..................................................................................... 184
C.1 INTRODUCTION...................................................................................................... 185
C.2 DIO CONNECTOR PINOUTS.................................................................................... 185
C.3 ASSEMBLY LANGUAGE SAMPLES........................................................................... 186
C.3.1 Enable the DIO Input Function..................................................................... 186
C.3.2 Enable the DIO Output Function.................................................................. 186
D WATCHDOG TIMER .............................................................................................. 187
E ADDRESS MAPPING .............................................................................................. 190
E.1 ADDRESS MAP...................................................................................................... 191
E.2 1ST MB MEMORY ADDRESS MAP........................................................................ 191
E.3 IRQ MAPPING TABLE ........................................................................................... 192
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E.4 DMA CHANNEL ASSIGNMENTS............................................................................ 192
F COMPATIBILITY..................................................................................................... 193
F.1 COMPATIBLE OPERATING SYSTEMS ........................................................................ 194
G HAZARDOUS MATERIALS DISCLOSURE....................................................... 195
G.1 HAZARDOUS MATERIALS DISCLOSURE TABLE FOR IPB PRODUCTS CERTIFIED AS
ROHS COMPLIANT UNDER 2002/95/EC WITHOUT MERCURY..................................... 196
H AC'97 AUDIO CODEC ............................................................................................ 199
H.1 INTRODUCTION...................................................................................................... 200
H.1.1 Accessing the AC'97 CODEC ....................................................................... 200
H.1.2 Driver Installation......................................................................................... 200
H.2 SOUND EFFECT CONFIGURATION........................................................................... 201
H.2.1 Accessing the Sound Effects Manager.......................................................... 201
WAFER-LX3 3.5" Motherboard
H.2.2 Sound Effect Manager Configuration Options ............................................. 202
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WAFER-LX3 3.5" Motherboard

List of Figures

Figure 1-1: WAFER-LX3 .................................................................................................................2
Figure 1-2: WAFER-LX3-800 and WAFER-LX3-800 W.................................................................3
Figure 1-3: WAFER-LX3 Overview [Front View] ..........................................................................4
Figure 1-4: WAFER-LX3 Overview [Solder Side].........................................................................5
Figure 2-1: WAFER-LX3 Dimensions (Front) (mm)...................................................................10
Figure 2-2: WAFER-LX3 Dimensions (Solder Side) (mm).........................................................10
Figure 2-3: External Interface Panel Dimensions (mm)............................................................11
Figure 2-4: Data Flow Block Diagram.........................................................................................12
Figure 2-5: AMD Geode™ LX 800 Processor.............................................................................13
Figure 2-6: AMD Geode™ CS5536..............................................................................................15
Figure 2-7: LPC Bus .....................................................................................................................17
Figure 4-1: Connector and Jumper Locations...........................................................................26
Figure 4-2: Connector and Jumper Locations (Solder Side) ...................................................27
Figure 4-3: ATX Power Button Connector Location .................................................................29
Figure 4-4: Main Power Input Connector Location...................................................................30
Figure 4-5: ATX Power Supply Enable Connector Location....................................................31
Figure 4-6: Audio Connector Pinouts (10-pin)...........................................................................32
Figure 4-7: Panel Backlight Connector Pinout Locations........................................................33
Figure 4-8: Battery Connector Location.....................................................................................34
Figure 4-9: CF Card Socket Location .........................................................................................35
Figure 4-10: +5 V Fan Connector Location................................................................................36
Figure 4-11: 26-Pin FDD Connector Location............................................................................37
Figure 4-12: GPIO Connector Pinout Locations........................................................................38
Figure 4-13: Secondary IDE Device Connector Locations.......................................................39
Figure 4-14: Keyboard/Mouse Connector Location..................................................................41
Figure 4-15: TFT LCD LVDS Connector Pinout Locations.......................................................42
Figure 4-16: LED Connector Locations......................................................................................43
Figure 4-17: Parallel Port Connector Location..........................................................................44
Figure 4-18: PC/104 Slot Location ..............................................................................................45
Figure 4-19: PC/104 Power Input Connector Pinouts...............................................................47
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Figure 4-20: Reset Button Connector Locations.......................................................................48
Figure 4-21: Serial Port Connector Location.............................................................................48
Figure 4-22: RS-232 and RS-422/485 Serial Port Connector Location....................................49
Figure 4-23: TFT LCD Connector Pinout Locations..................................................................50
Figure 4-24: USB Connector Pinout Locations.........................................................................52
Figure 4-25: WAFER-LX3 External Peripheral Interface Connector........................................53
Figure 4-26: RJ-45 Ethernet Connector......................................................................................53
Figure 4-27: COM1 Pinout Locations..........................................................................................54
Figure 4-28: VGA Connector .......................................................................................................55
Figure 5-1: CF Card Installation..................................................................................................62
Figure 5-2: AT Power Select Jumper Location..........................................................................64
Figure 5-3: CF Card Setup Jumper Location.............................................................................65
Figure 5-4: Clear CMOS Jumper .................................................................................................66
Figure 5-5: COM 1/2 Pin 9 Setting Jumper Location.................................................................67
WAFER-LX3 3.5" Motherboard
Figure 5-6: LCD Panel Shift Clock Setting Jumper Location...................................................68
Figure 5-7: LCD Voltage Selection Jumper Location................................................................69
Figure 5-8: Serial Port Mode Select Jumper Pinout Locations................................................70
Figure 5-9: IDE Cable Connection...............................................................................................72
Figure 5-10: Keyboard/mouse Y-cable Connection..................................................................73
Figure 5-11: LPT Cable Connection............................................................................................74
Figure 5-12: Connect the LPT Device.........................................................................................75
Figure 5-13: Dual RS-232 Cable Installation..............................................................................76
Figure 5-14: Dual USB Cable Connection..................................................................................77
Figure 5-15: LAN Connection......................................................................................................78
Figure 5-16: Serial Device Connector.........................................................................................79
Figure 5-17: USB Device Connection.........................................................................................80
Figure 5-18: VGA Connector .......................................................................................................81
Figure 7-1: Access Windows Control Panel ........................................................................... 136
Figure 7-2: Performance and Maintenance............................................................................. 137
Figure 7-3: Access the System ................................................................................................ 137
Figure 7-4: System Properties.................................................................................................. 138
Figure 7-5: Open Device Manager............................................................................................ 139
Figure 7-6: Device Manager...................................................................................................... 140
Figure 7-7: Video Controller (Device Manager)...................................................................... 141
Figure 7-8: Update Driver Selection......................................................................................... 141
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WAFER-LX3 3.5" Motherboard
Figure 7-9: Hardware Update Wizard....................................................................................... 142
Figure 7-10: VGA Driver Installation Start............................................................................... 143
Figure 7-11: Wizard Search ...................................................................................................... 144
Figure 7-12: Wizard Warning Screen....................................................................................... 144
Figure 7-13: VGA Driver Installation........................................................................................ 145
Figure 7-14: VGA Driver Installation Complete ...................................................................... 146
Figure 7-15: Device Manager Update....................................................................................... 147
Figure 7-16: Audio Controller (Device Manager).................................................................... 148
Figure 7-17: Update Audio Driver Selection ........................................................................... 148
Figure 7-18: Hardware Update Wizard..................................................................................... 149
Figure 7-19: Audio Driver Installation Start............................................................................ 150
Figure 7-20: Wizard Search ...................................................................................................... 151
Figure 7-21: Wizard Warning Screen....................................................................................... 151
Figure 7-22: Audio Driver Installation...................................................................................... 152
Figure 7-23: Audio Driver Installation Complete.................................................................... 153
Figure 7-24: Device Manager Update....................................................................................... 154
Figure 7-25: Ethernet Controller (Device Manager) ............................................................... 155
Figure 7-26: Update Ethernet Driver Selection....................................................................... 155
Figure 7-27: Hardware Update Wizard..................................................................................... 156
Figure 7-28: Ethernet Driver Installation Start........................................................................ 157
Figure 7-29: Wizard Search ...................................................................................................... 158
Figure 7-30: Wizard Warning Screen....................................................................................... 158
Figure 7-31: Ethernet Driver Installation................................................................................. 159
Figure 7-32: Ethernet Driver Installation Complete................................................................ 160
Figure 7-33: Device Manager Update....................................................................................... 161
Figure 7-34: Entertainment Encryption/Decryption Controller............................................. 162
Figure 7-35: Update Entertainment Encryption/Decryption Controller................................ 162
Figure 7-36: Hardware Update Wizard..................................................................................... 163
Figure 7-37: Entertainment Encryption/Decryption Controller Driver ................................. 164
Figure 7-38: Wizard Search ...................................................................................................... 165
Figure 7-39: Entertainment Encryption/Decryption Controller Installation......................... 166
Figure 7-40: Entertainment Encryption/Decryption Controller Installation Complete....... 167
Figure 7-41: Device Manager Update....................................................................................... 168
Figure 7-42: Other PCI Bridge Device Controller (Device Manager).................................... 169
Figure 7-43: Other PCI Bridge Device Controller Driver Selection....................................... 170
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Figure 7-44: Hardware Update Wizard..................................................................................... 171
Figure 7-45: Other PCI Bridge Device Controller Driver Installation Start .......................... 172
Figure 7-46: Wizard Search ...................................................................................................... 173
Figure 7-47: PCI Bridge Device Controller Driver Installation Complete............................. 174
Figure 7-48: Device Manager Update....................................................................................... 175
WAFER-LX3 3.5" Motherboard
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WAFER-LX3 3.5" Motherboard

List of Tables

Table 1-1: Technical Specifications..............................................................................................8
Table 2-1: Power Consumption...................................................................................................20
Table 3-1: Package List Contents...............................................................................................24
Table 3-2: Package List Contents...............................................................................................24
Table 4-1: Peripheral Interface Connectors...............................................................................28
Table 4-2: Rear Panel Connectors..............................................................................................28
Table 4-3: ATX Power Button Connector Pinouts.....................................................................29
Table 4-4: Main Power Input Connector Pinouts.......................................................................30
Table 4-5: ATX Power Supply Enable Connector Pinouts .......................................................31
Table 4-6: Audio Connector Pinouts (10-pin)............................................................................32
Table 4-7: Panel Backlight Connector Pinouts..........................................................................33
Table 4-8: Battery Connector Pinouts........................................................................................34
Table 4-9: CF Card Socket Pinouts.............................................................................................36
Table 4-10: +5 V Fan Connector Pinouts....................................................................................37
Table 4-11: 26-pin FDD Connector Pinouts ...............................................................................38
Table 4-12: GPIO Connector Pinouts..........................................................................................39
Table 4-13: Secondary IDE Connector Pinouts.........................................................................40
Table 4-14: Keyboard/Mouse Connector Pinouts .....................................................................41
Table 4-15: LCD LVDS Port Connector Pinouts........................................................................42
Table 4-16: LED Connector Pinouts ...........................................................................................43
Table 4-17: Parallel Port Connector Pinouts .............................................................................44
Table 4-18: PC/104 Slot Connector Pinouts...............................................................................46
Table 4-19: PC/104 Power Input Connector Pinouts.................................................................47
Table 4-20: Reset Button Connector Pinouts............................................................................48
Table 4-21: COM3 Pinouts...........................................................................................................49
Table 4-22: COM2 Pinouts...........................................................................................................50
Table 4-23: COM4 Pinouts...........................................................................................................50
Table 4-24: TFT LCD Port Connector Pinouts ...........................................................................51
Table 4-25: USB Port Connector Pinouts...................................................................................52
Table 4-26: LAN Pinouts ..............................................................................................................53
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Table 4-27: RJ-45 Ethernet Connector LEDs.............................................................................54
Table 4-28: RS-232 Serial Port (COM 1) Pinouts .......................................................................54
Table 4-29: USB Port Pinouts......................................................................................................55
Table 4-30: VGA Connector Pinouts...........................................................................................56
Table 5-1: Jumpers.......................................................................................................................63
Table 5-2: AT Power Select Jumper Settings ............................................................................64
Table 5-3: CF Card Setup Jumper Settings ...............................................................................65
Table 5-4: CN7 Clear CMOS Jumper Settings ...........................................................................66
Table 5-5: COM 1/2 Pin 9 Setting Jumper Settings...................................................................67
Table 5-6: LCD Panel Shift Clock Setting...................................................................................68
Table 5-7: LCD Voltage Selection Jumper Settings..................................................................69
Table 5-8: Serial Port Mode Select Jumper Settings ................................................................70
Table 5-9: IEI Provided Cables....................................................................................................71
Table 6-1: BIOS Navigation Keys................................................................................................84
WAFER-LX3 3.5" Motherboard
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WAFER-LX3 3.5" Motherboard

BIOS Menus

BIOS Menu 1: Main.......................................................................................................................85
BIOS Menu 2: Advanced..............................................................................................................87
BIOS Menu 3: CPU Configuration...............................................................................................88
BIOS Menu 4: IDE Configuration.................................................................................................89
BIOS Menu 5: IDE Master and IDE Slave Configuration...........................................................91
BIOS Menu 6: IDE Master and IDE Slave Configuration...........................................................96
BIOS Menu 7: Super IO Configuration........................................................................................97
BIOS Menu 8: Hardware Health Configuration....................................................................... 100
BIOS Menu 9: Remote Access Configuration......................................................................... 104
BIOS Menu 10: USB Configuration.......................................................................................... 108
BIOS Menu 11: IT8888 Configuration ...................................................................................... 109
BIOS Menu 12: ISA Decode I/O Spaces................................................................................... 114
BIOS Menu 13: ISA Decode Memory Spaces.......................................................................... 116
BIOS Menu 14: Power Configuration....................................................................................... 118
BIOS Menu 15: PCI/PnP Configuration.................................................................................... 119
BIOS Menu 16: Boot.................................................................................................................. 121
BIOS Menu 17: Boot Settings Configuration.......................................................................... 122
BIOS Menu 18: Boot Device Priority Settings ........................................................................ 124
BIOS Menu 19: Hard Disk Drives ............................................................................................. 125
BIOS Menu 20: CD/DVD Drives ................................................................................................ 126
BIOS Menu 21: Removable Drives........................................................................................... 127
BIOS Menu 22: Security............................................................................................................ 128
BIOS Menu 23: Chipset............................................................................................................. 129
BIOS Menu 24: Northbridge Chipset Configuration............................................................... 130
BIOS Menu 25: Exit.................................................................................................................... 132
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WAFER-LX3 3.5" Motherboard
Chapter
1

1 Introduction

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1.1 Introduction

Figure 1-1: WAFER-LX3
WAFER-LX3 3.5" Motherboard
The WAFER-LX3 3.5” motherboard is an AMD Geode™ LX 800 processor platform that comes in both commercial and industrial grade models. Industrial grade models are able to operate in extreme environmental conditions and in operational environments with wide ranging ambient temperatures.
Support for VGA, LVDS and TTL displays provides diversified display functionaliti es. Each WAFER-LX3 has either 256 MB or 512 MB DDR memory preinstalled on the system. Two 10/100 Mb/s Intel® 82551ER Ethernet controllers ensure secure network connecti vity.
A compatible PC/104 ISA expansion card is easily connected to the system through an integrated PC/104 slot. Four USB 2.0 connectors provide additional expansion options to the system ensuring a variety of USB 2.0 devices can be connected to the WAFER-LX3.

1.2 Models

The WAFER-LX3 models are listed below.
WAFER-LX3-800-256 MB – 256 MB memory, 0ºC~60ºC temp. range
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WAFER-LX3-800 W -25 6 MB – 256 MB memory, –40ºC~85ºC temp. range  WAFER-LX3-800-512 MB – 512 MB memory, 0ºC~60ºC temp. range  WAFER-LX3-800 W -51 2 MB – 512 MB memory, –40ºC~85ºC temp. range
The two models are distinguished by the preinstalled heat sinks as shown in
Figure 1-2.
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WAFER-LX3 3.5" Motherboard
Figure 1-2: WAFER-LX3-800 and WAFER-LX3-800 W

1.3 Features

Some of the WAFER-LX3 features are listed below.
3.5” form factor  Integrated 500 MHz AMD Geode™ LX 800 CPU  Onboard 256 MB or 512 MB DDR memory  Multiple display options including
Operates in a wide range of ambient temperatures:

1.4 Overview

The WAFER-LX3 has a wide variety of peripheral interface connectors. Figure 1-3 is a labeled photo of the peripheral interface connectors on the front side of the WAFER-LX3.
o VGA o 24-bit TTL o 18-bit LVDS display interface
o WAFER-LX3-800: 0ºC~60ºC o WAFER-LX3-800 W: -40ºC~85ºC
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WAFER-LX3 3.5" Motherboard
Figure 1-3: WAFER-LX3 Overview [Front View]
Figure 1-4 is a labeled photo of the peripheral interface connectors on the solder side of
the WAFER-LX3.
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WAFER-LX3 3.5" Motherboard
Figure 1-4: WAFER-LX3 Overview [Solder Side]

1.5 Peripheral Connectors and Jumpers

The WAFER-LX3 has the following connectors on-board:
1 x ATX power connector  1 x Audio connector  1 x Backlight inverter connector  1 x Battery connector  1 x CF Card socket (solder side)  1 x Fan connectors  1 x FDD connector (optional)  1 x Front panel connector  1 x General purpose input/output (GPIO) connector  1 x IDE connector
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1 x Keyboard/mouse connector  1 x LVDS LCD connector  1 x Parallel port (LPT) connector  1 x PC/104 slot  1 x Power button connector  1 x Power input (–5 V/-12 V) connector  2 x RS-232 serial port connector  1 x RS-422/485 serial port connector  1 x Suspend power input connector  1 x System reset button connector  1 x TTL LCD connector  1 x USB 2.0 connector
The WAFER-LX3 has the following external peripheral interface connectors on the board rear panel.
WAFER-LX3 3.5" Motherboard
2 x RJ-45 Fast Ethernet connectors  1 x RS-232 serial port connector  2 x USB 2.0 connectors  1 x VGA connector
The WAFER-LX3 has the following on-board jumpers:
AT/ATX power mode select jumper  CF Card mode select jumper  COM1 and COM2 serial RI port and voltage selection jumper  LCD panel shift clock setting jumper  LCD panel voltage select jumper  RS-422/485 mode select jumper

1.6 Technical Specifications

WAFER-LX3 technical specifications are listed in Table 1-1. See Chapter 2 for details.
Page 6
Specification WAFER-LX3 Form Factor
3.5”
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WAFER-LX3 3.5" Motherboard
Specification WAFER-LX3 System CPU CPU Clock Speed System Chipset Memory
Display
BIOS Audio LAN COM
USB2.0
AMD Geode™ LX 800 500 MHz AMD Geode™ CS5536 companion device 256 MB or 512 MB DDR Analog VGA display through external DB-15 connector
24-bit TTL through 40-pin crimp connector 18-bit single channel LVDS through 20-pin crimp connector
AMI BIOS label AC’97 RealTek ALC203 codec Dual Intel® 82551 10/100 Mb/s Ethernet controllers Three RS-232 serial port (one external)
One RS-422/485 serial port Four USB 2.0 devices supported (two by pin header, two
external)
Hard Disk Drives Parallel Port Expansion Digital I/0 Super I/O SSD Watchdog Timer
Power Supply Power Consumption Ambient Temperature
Humidity
One 44-pin IDE connector One 26-pin LPT connector One PC/104 slot One 8-bit digital I/0, 4-bit input/4-bit output SMSC SCH3114 CF Card Type II Software programmable supports 1 sec. ~ 255 sec. system
reset. AT and ATX support 5 V @ 1.34 A (AMD Geode™ LX 800 CPU with 256 MB DDR) WAFER-LX3-800: 0°C~60°C
WAFER-LX3-800 W: -40° C~85°C 5% ~ 95% non-condensing
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Specification WAFER-LX3
WAFER-LX3 3.5" Motherboard
Dimensions (W x L) Weight (GW/NW)
Table 1-1: Technical Specifications
146 mm x 102 mm 600 g / 160 g
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WAFER-LX3 3.5" Motherboard
Chapter
2

2 Detailed Specifications

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2.1 Dimensions

The dimensions of the board are listed below:
Length: 102.00 mm  Width: 146.00 mm
WAFER-LX3 3.5" Motherboard
Figure 2-1: WAFER-LX3 Dimensions (Front) (mm)
Figure 2-2: WAFER-LX3 Dimensions (Solder Side) (mm)
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WAFER-LX3 3.5" Motherboard
External peripheral interface connector panel dimensions are shown in Figure 2-3.
Figure 2-3: External Interface Panel Dimensions (mm)

2.2 Data Flow

Figure 2-4 shows the data flow between the two on-board chipsets and other components
installed on the motherboard and described in the following sections of this chapter.
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WAFER-LX3 3.5" Motherboard
Figure 2-4: Data Flow Block Diagram
2.3 AMD® Geode™ LX 800 500 MHz CPU
The 500 MHz AMD® Geode™ LX 800 processor is shown below.
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WAFER-LX3 3.5" Motherboard
Figure 2-5: AMD Geode™ LX 800 Processor
The specifications for the 500 MHz AMD
 x86/x87-compatible core  Processor frequency up to 500 MHz  64K I/64K D L1 cache and 128K L2 cache  Split I/D cache/TLB (Translation Look-Aside Buffer)  Integrated FPU that supports the Intel MMX® and AMD 3DNow!™
Technology instruction sets
9 GB/s internal GeodeLink™ Interface Unit (GLIU)  Security Block
o 128-bit AES (CBC/ECB)
True Random Number Generator

2.3.1 Memory Support

®
Geode™ LX 800 are listed below
The AMD® Geode™ LX 800 DDR memory bus on the WAFER-LX3 is connected to the DDR memory, 256 MB and 512 MB DDR options are available.
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2.3.2 Display Support

The AMD® Geode™ LX 800 supports both CRT and TFT in a dual display mode and has the following specifications.
Supported Standards
o High Definition (HD) o Standard Definition (SD)
Supported Resolution
o 1920x1440 in CRT mode o 1600x1200 in TFT mode
VESA 1.1 and 2.0 VIP/VDA support
2.3.2.1 VGA
The VGA interface supports standard CRT output and has a maximum resolution of
WAFER-LX3 3.5" Motherboard
1920x1440.
2.3.2.2 TTL
The TTL interface connects to a TTL monitor and supports up to 1600x1200 screen resolution.
2.3.2.3 LVDS
The TTL interface connects to a TTL-to-LVDS transmitter which converts the TT L signal to an LVDS signal and is connected to the LVDS connector on the board. The LVDS connector supports up to 1600x1200 screen resolution.

2.3.3 Power Management

The power management for the 500 MHz AMD® Geode™ LX 800 is listed below:
1.8 W Typical (3.9 W TDP) @ 500 MHz  GeodeLink active hardware power management
Page 14
Hardware support for standard ACPI software power management  I/O companion SUSP#/SUSPA# power controls  Lower power I/O
Page 33
WAFER-LX3 3.5" Motherboard
Wakeup on SMI/INTR

2.3.4 GeodeLink™ Interface Unit

A proprietary GeodeLink™ interface connects the AMD Geode™ LX 800 to the AMD Geode™ CS5536 system chipset.
2.4 AMD® Geode™ CS5536 System Chipset
The WAFER-LX3 series motherboards all have a preinstalled AMD® Geode™ CS5536 system chipset.
Figure 2-6: AMD Geode™ CS5536
The system chipset features are listed below.
82xx Legacy Devices  System Management Bus (SMB) Controller  8 Multi-Function General Purpose Timers (MFGPTs)  Power Management Controller
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ACPI v2.0 compliant

2.4.1 IDE Controller

The single 44-pin IDE connector supports up to two IDE device s incl uding h ard dri ves an d DVD drives.

2.4.2 Audio Codec 97 (AC’97) Controller

The WAFER-LX3 has the following audio interfaces.
 Stereo output  Stereo line input  Dual microphone input

2.4.3 Flash Interface

WAFER-LX3 3.5" Motherboard
The CompactFlash® slot support both Type I and Type II CompactFlash® cards.

2.4.4 USB Controller

There are four USB ports on the WAFER-LX3, two internal ports through a single pin-header and two external USB Type A ports. All USB ports are USB 2.0 compliant and support legacy devices like keyboards and mice.

2.4.5 Real Time Clock

The system chipset has a 256-byte real-time clock (RTC) with CMOS RAM and battery backup.

2.4.6 PCI Bus

The GeodeLink™ PCI Bridge (GLPCI) module provides a PCI interface for GeodeLink Interface Unit-based designs. The PCI bus on the WAFER-LX3 is connected to the following components:
Page 16
2 x Intel® 82551ER PCI Fast Ethernet controllers  1 x ITE IT8888G PCI to ISA bridge
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WAFER-LX3 3.5" Motherboard
2.4.6.1 Intel® 82551ER PCI Ethernet Controller
Two Intel® 82551ER PCI Ethernet 10/100BASE-T Ethernet LAN controllers are interfaced to the AMD Geode™ CS5536 through the PCI bus. The Ethernet controllers are t hen b oth connected to an RJ-45 connector that can be accessed externally.
2.4.6.2 PCI to ISA Bridge
An ITE IT8888G PCI-to-ISA chip connects the ISA bus PC/104 connector and the GPIO connector to the GeodeLink™ PCI bridge. PC/104 compliant cards can be installed.

2.5 LPC Bus Components

The LPC bus is legacy bus for connecting certain components.
Figure 2-7: LPC Bus
The LPC bus is connected to components listed below:
BIOS chipset Super I/O chipset
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2.5.1 BIOS Chipset

The BIOS chipset has a licensed copy of AMI BIOS installed. Some of the BIOS features are listed below:
 AMI BIOS  SMIBIOS (DMI) compliant  Console redirection function support  PXE (Pre-boot Execution Environment) support  USB booting support

2.5.2 SMSC SCH3114 Super I/O chipset

The SMSC SCH3114 Super I/O chipset is connected to the AMD Geode™ CS5536 companion device through the LPC bus. The super I/O connects to the following.
WAFER-LX3 3.5" Motherboard
2.5.2.1 Hardware Monitor Functions2.5.2.2 UART Controller2.5.2.3 Parallel Port2.5.2.4 Floppy Disk Drive Controller (Optional)2.5.2.5 Keyboard and Mouse Controller2.5.2.6 GPIO Ports2.5.2.7 Fan Speed and Fan Control
Details on these connections are shown is the subsections below.
2.5.2.1 Hardware Monitor Functions
The Super I/O Hardware Monitor monitors internal voltages, system temperature and the cooling fan speed. All the monitored environmental parameters can be read from the BIOS Hardware Health Configuration menu.
2.5.2.2 UART Controller
Page 18
There are two high-speed 16550 compatible UART controllers integrated onto the Super I/O chipset. Both controllers have 16-byte send/receive FIFO. Some of the features of the UART controllers are listed below:
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WAFER-LX3 3.5" Motherboard
MIDI compatible Fully programmable serial-interface characteristics:
o 5, 6, 7, or 8-bit characters o Even, odd or no parity bit generation/detection o 1, 1.5 or 2 stop bits generation
Internal diagnostic capabilities:
o Loop-back control for communications link fault isolation o Break, parity, overrun, framing error stimulation
Programmable baud generator allows division of 1.8461 MHz and 24 MHz by
16
1 to (2
Maximum baud rate up to 921 kbps for 14.769 MHz and 1.5 Mb/s for 24 MHz
2.5.2.3 Parallel Port
The Super I/O parallel port (LPT) is compatible with the following LPT specifications.
– 1)
IBM parallel port compatible  PS/2 compatible bi-directional parallel port  Enhanced Parallel Port (EPP) mode supported. Compatible with IEEE 1284
specifications
Extended Parallel Port (EPP) mode supported. Compatible with IEEE 1284
specifications
Enhanced printer port back-drive current protection
The parallel port controller is connected to an external DB-26 LPT connector.
2.5.2.4 Floppy Disk Drive Controller (Optional)
The floppy disk drive controller supports a standard floppy drive up to 2.88 MB. The floppy disk drive connector is an optional extra and not included on the standard board.
2.5.2.5 Keyboard and Mouse Controller
The keyboard and mouse controller connects to standard PS/2 keyboards and mice.
2.5.2.6 GPIO Ports
The Super I/O has 22 programmable GPIO ports.
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WAFER-LX3 3.5" Motherboard
2.5.2.7 Fan Speed and Fan Control
The super I/O can both monitor and control the fan speed. The super I/O is interfaced to the fan on the backplane through the board-to-board connectors.

2.6 Environmental and Power Specifications

2.6.1 Operating Temperature and Temperature Control

The maximum and minimum operating temperatures for the WAFER-LX3 are listed below.
WAFER-LX3-800: Operates in temperatures of 0°C ~ +60°C  WAFER-LX3-800 W: Operates in temperatures of -40°C ~ +85°C

2.6.2 Power Consumption

Table 2-1 shows the power consumption parameters for the WAFER-LX3 running with an
AMD Geode™ LX 800 CPU with 256 MB of onboard memory.
Voltage Current
+5.0 V 1.34A
Table 2-1: Power Consumption
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WAFER-LX3 3.5" Motherboard
Chapter
3

3 Unpacking

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3.1 Anti-static Precautions

WARNING:
Failure to take ESD precautions during the installation of the WAFER-LX3 may result in permanent damage to the WAFER-LX3 and severe injury to the user.
Electrostatic discharge (ESD) can cause serious damage to electronic components, including the WAFER-LX3. Dry climates are especially susceptible to ESD. It is therefore critical that whenever the WAFER-LX3, or any other electrical component is handled, the following anti-static precautions are strictly adhered to.
Wear an anti-static wristband: - Wearing a simple anti-static wristband can
WAFER-LX3 3.5" Motherboard
help to prevent ESD from damaging the board.
Self-grounding:- Before handling the board touch any grounded conducting
material. During the time the board is handled, frequently touch any conducting materials that are connected to the ground.
Use an anti-static pad: When configuring the WA FER-LX3, place it on an
antic-static pad. This reduces the possibility of ESD damaging the WAFER-LX3.
Only handle the edges of the PCB:-: When handling the PCB, hold the PCB
by the edges.

3.2 Unpacking

3.2.1 Unpacking Precautions

When the WAFER-LX3 is unpacked, please do the following:
Follow the anti-static precautions outlined in Section Make sure the packing box is facing upwards so the WAFER-LX3 does not fall
3.1.
Page 22
out of the box.
Make sure all the components shown in Section
3.3 are present.
Page 41
WAFER-LX3 3.5" Motherboard

3.3 Unpacking Checklist

NOTE:
If some of the components listed in the checklist below are missing, please do not proceed with the installation. Contact the IEI reseller or vendor you purchased the WAFER-LX3 from or contact an IEI sales representative directly. To contact an IEI sales representative, please send an email to sales@iei.com.tw.

3.3.1 Package Contents

The WAFER-LX3 is shipped with the following components:
Quantity Item and Part Number Image
1 WAFER-LX3
1 IDE 44p/44p flat cable
(P/N: 32200-000009-RS)
1 RS-232/422/485 cable
(P/N:32200-026500-RS)
1 KB/MS PS/2 Y-cable
(P/N: 32000-023800-RS)
4 Dual USB cable (wo bracket)
(P/N: 32000-070300-RS)
1 Audio cable
(P/N: 32000-072100-RS)
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Quantity Item and Part Number Image
1 Mini jumper pack (2.0 mm)
(P/N:33100-000033-RS)
1 Quick Installation Guide
1 Utility CD
Table 3-1: Package List Contents
WAFER-LX3 3.5" Motherboard

3.4 Optional Items

Item Image
LPT cable (wo bracket) (P/N: 32200-015100-RS)
Table 3-2: Package List Contents
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WAFER-LX3 3.5" Motherboard

4 Connector Pinouts

Chapter
4
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4.1 Peripheral Interface Connectors

Section 0 shows peripheral interface connector locations. Section 0 lists all the
WAFER-LX3 3.5" Motherboard
peripheral interface connectors seen in Section
0.

4.1.1 Layout

Figure 4-1 shows the on-board peripheral connectors, rear panel peripheral connectors
and on-board jumpers.
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Figure 4-1: Connector and Jumper Locations
Page 45
WAFER-LX3 3.5" Motherboard
Figure 4-2: Connector and Jumper Locations (Solder Side)

4.1.2 Peripheral Interface Connectors

Table 4-1 shows a list of the peripheral interface connectors on the WAFER-LX3. Detailed
descriptions of these connectors can be found below.
Connector Type Label
ATX power button connector 2-pin wafer CN13 ATX power connector 4-pin A TX connector CN1 Audio connector 10-pin box-header CN8 ATX power supply enable connector 3-pin wafer CN2 Backlight inverter connector 5-pin wafer CN3 Battery connector 2-pin wafer CN7 CF card connector 50-pin CF card slot CN32 Fan connector 3-pin wafer CN6 FDD connector (optional) 26-pin slim type CN31 GPIO connector 10-pin header CN14 HDD connector 44-pin box-header CN30
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Connector Type Label
Keyboard and mouse connector 6-pin header CN17 LED connector 6-pin wafer CN5 LVDS connector 20-pin crimp CN29 Parallel port connector 26-pin header CN15 PC/104 slot 104-pin PC/104 slot CN10 PC/104 power input connector 3-pin wafer CN11 Reset button connector 2-pin wafer CN12 RS-232 serial port connector 10-pin header CN37
WAFER-LX3 3.5" Motherboard
RS-232 and RS-422/485 serial port connector
TTL LCD connector 40-pin crimp CN28 USB port connector 8-pin header CN24
Table 4-1: Peripheral Interface Connectors
14-pin header CN20

4.1.3 External Interface Panel Connectors

Table 4-2 lists the rear panel connectors on the WAFER-LX3. Detailed descriptions of these connectors can be found in Section
Connector Type Label
Ethernet connector RJ-45 CN33 Ethernet connector RJ-45 CN34 RS-232 serial port connector Male DB-9 CN23
4.2.17 on page 46.
Page 28
Keyboard/mouse connector (optional) PS/2 CN18 USB connector USB port CN19 VGA connector Female DB-15 CN26
Table 4-2: Rear Panel Connectors
Page 47
WAFER-LX3 3.5" Motherboard

4.2 Internal Peripheral Connectors

Internal peripheral connectors are found on the motherboard and are only accessible when the motherboard is outside of the chassis. T his se ction h as complet e d esc ription s of all the internal, peripheral connectors on the WAFER-LX3.

4.2.1 ATX Power Button Connector

CN Label: CN13 CN Type: CN Location: CN Pinouts:
The ATX power button connector is connected to a power switch on the system chas sis to enable users to turn the system on and off.
Figure 4-3: ATX Power Button Connector Location
2-pin wafer (1x2) See Figure 4-3 See Table 4-3
PIN NO. DESCRIPTION
1 Power Switch 2 GND
Table 4-3: ATX Power Button Connector Pinouts

4.2.2 ATX Power Input Connector

CN Label: CN1 CN Type:
4-pin power connector (1x4)
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WAFER-LX3 3.5" Motherboard
CN Location: CN Pinouts:
The 4-pin ATX power input connector is connected to an ATX or AT power supply, which provides power to the system. If an ATX power supply is used, the ATX power supply enable connector (see below) and the ATX power button connector should both be connected. The AT/ATX mode select jumper should also be configured in ATX mode (see Chapter 5)
See Figure 4-4 See Table 4-4
Figure 4-4: Main Power Input Connector Location
PIN NO. DESCRIPTION
1 +12 V 2 GND 3 GND 4 +5 V
Table 4-4: Main Power Input Connector Pinouts

4.2.3 ATX Power Supply Enable Connector

CN Label: CN2 CN Type: CN Location:
3-pin wafer (1x3) See Figure 4-5
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WAFER-LX3 3.5" Motherboard
CN Pinouts:
The ATX power supply enable connector enables the WAFER-LX3 to be connected to an ATX power supply. In default mode, the WAFER-LX3 can only us an AT power supply. To enable an ATX power supply the AT Power Select jumper must also be configured. Please refer to Chapter 5 for more details.
See Table 4-5
Figure 4-5: ATX Power Supply Enable Connector Location
PIN NO. DESCRIPTION
1 +5 VSB 2 NC 3 PSON#
Table 4-5: ATX Power Supply Enable Connector Pinouts

4.2.4 Audio Connector (10-pin)

CN Label: CN8 CN Type: CN Location: CN Pinouts:
10-pin box-header See Figure 4-6 See Table 4-6
The 10-pin audio connector is connected to external audio devices including speakers a nd microphones for the input and output of audio signals to and from the system.
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WAFER-LX3 3.5" Motherboard
Figure 4-6: Audio Connector Pinouts (10-pin)
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 Line out R 2 Line in R 3 GND 4 GND 5 Line out L 6 Line in L 7 GND 8 GND 9 MIC in 10 NC
Table 4-6: Audio Connector Pinouts (10-pin)

4.2.5 Backlight Inverter Connector

CN Label: CN3 CN Type: CN Location: CN Pinouts:
The backlight inverter connector provides the backlight on the LCD display connected to the WAFER-LX3 with +12 V of power.
5-pin wafer (1x5) See Figure 4-7 See Table 4-7
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WAFER-LX3 3.5" Motherboard
Figure 4-7: Panel Backlight Connector Pinout Locations
PIN NO. DESCRIPTION
1 LCD_Adj 2 GROUND 3 +12 V 4 GROUND 5 BACKLIGHT ENABLE
Table 4-7: Panel Backlight Connector Pinouts

4.2.6 Battery Connector

CN Label: CN7 CN Type: CN Location: CN Pinouts:
The battery connector is connected to a backup battery. The battery connector is also used to reset the CMOS memory if the incorrect BIOS settings have been made and the system cannot boot up.
2-pin wafer (1x2) See Figure 4-8 See Table 4-8
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Figure 4-8: Battery Connector Location
WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION
1 Battery+ 2 Ground
Table 4-8: Battery Connector Pinouts

4.2.7 CompactFlash® Socket

CN Label: CN32 (solder side) CN Type: CN Location: CN Pinouts:
A CF Type I or Type II memory card is inserted to the CF socket on the solder side of the WAFER-LX3.
50-pin header (2x25) See Figure 4-9 See Table 4-9
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WAFER-LX3 3.5" Motherboard
Figure 4-9: CF Card Socket Location
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 GROUND 26 VCC-IN CHECK1 2 DATA 3 27 DATA 11 3 DATA 4 28 DATA 12 4 DATA 5 29 DATA 13 5 DATA 6 30 DATA 14 6 DATA 7 31 DATA 15 7 HDC_CS0# 32 HDC_CS1 8 N/C 33 N/C 9 GROUND 34 IOR# 10 N/C 35 IOW# 11 N/C 36 VCC_COM 12 N/C 37 IRQ15 13 VCC_COM 38 VCC_COM 14 N/C 39 CSEL 15 N/C 40 N/C 16 N/C 41 HDD_RESET 17 N/C 42 IORDY 18 SA2 43 SDREQ 19 SA1 44 SDACK#
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PIN NO. DESCRIPTION PIN NO. DESCRIPTION
20 SA0 45 HDD_ACTIVE# 21 DATA 0 46 66DET 22 DATA 1 47 DATA 8 23 DATA 2 48 DATA 9 24 N/C 49 DATA 10 25 VCC-IN CHECK2 50 GROUND
Table 4-9: CF Card Socket Pinouts

4.2.8 Fan Connector (+5 V, 3-pin)

CN Label: CN6
WAFER-LX3 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
3-pin wafer See Figure 4-10 See Table 4-10
The cooling fan connector provides a 5 V, 500mA current to a system cooling fan. The connector has a "rotation" pin to get rotation signals from fans and notify the system so the system BIOS can recognize the fan speed. Please note that only specified fans can issue the rotation signals.
Page 36
Figure 4-10: +5 V Fan Connector Location
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WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION
1 Fan Speed Detect 2 +5 V 3 GND
Table 4-10: +5 V Fan Connector Pinouts

4.2.9 Floppy Disk Connector (26-pin)

CN Label: CN31 (solder side) CN Type: CN Location: CN Pinouts:
26-pin slim-type (1 x 26) See Figure 4-11 See Table 4-11
The floppy disk connector is connected to a floppy disk drive.
Figure 4-11: 26-Pin FDD Connector Location
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 +5 V 14 STEP# 2 INDEX# 15 GND 3 +5 V 16 WDATA# 4 DSA# 17 GND 5 +5 V 18 WGATE# 6 DSKCHG# 19 GND
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PIN NO. DESCRIPTION PIN NO. DESCRIPTION
7 NC 20 TRACK0# 8 NC 21 GND 9 NC 22 WP# 10 MOTO0# 23 GND 11 NC 24 RDATA# 12 DIR# 25 GND 13 NC 26 HEAD#
Table 4-11: 26-pin FDD Connector Pinouts

4.2.10 GPIO Connector

CN Label: CN14
WAFER-LX3 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
10-pin header (2x5) See Figure 4-12 See Table 4-12
The GPIO connector can be connected to external I/O control devices including sensors, lights, alarms and switches.
Page 38
Figure 4-12: GPIO Connector Pinout Locations
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 GND 2 VCC5 3 OUT 0 4 OUT 1
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WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
5 OUT 2 6 OUT 3 7 IN 0 8 IN 1 9 IN 2 10 IN 3
Table 4-12: GPIO Connector Pinouts

4.2.11 HDD Connector(44-pin)

CN Label: CN30 CN Type: CN Location: CN Pinouts:
44-pin header (2x22) See Figure 4-13 See Table 4-13
One 44-pin IDE device connector on the WAFER-LX3 supports connectivity to two hard disk drives.
Figure 4-13: Secondary IDE Device Connector Locations
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 RESET# 2 GROUND 3 DATA 7 4 DATA 8 5 DATA 6 6 DATA 9 7 DATA 5 8 DATA 10 9 DATA 4 10 DATA 11
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PIN NO. DESCRIPTION PIN NO. DESCRIPTION
11 DATA 3 12 DATA 12 13 DATA 2 14 DATA 13 15 DATA 1 16 DATA 14 17 DATA 0 18 DATA 15 19 GROUND 20 N/C 21 IDE DRQ 22 GROUND 23 IOW# 24 GROUND 25 IOR# 26 GROUND 27 IDE CHRDY 28 GROUND 29 IDE DACK 30 GROUND–DEFAULT 31 INTERRUPT 32 N/C 33 SA1 34 N/C 35 SA0 36 SA2
WAFER-LX3 3.5" Motherboard
37 HDC CS0# 38 HDC CS1# 39 HDD ACTIVE# 40 GROUND 41 VCC 42 VCC 43 GROUND 44 N/C
Table 4-13: Secondary IDE Connector Pinouts

4.2.12 Keyboard/Mouse Connector

CN Label: CN17 CN Type: CN Location: CN Pinouts:
The keyboard and mouse connector can be connected to a standard PS/2 cable or PS/2 Y-cable to add keyboard and mouse functionality to the system.
6-pin header (1x6) See Figure 4-14 See Table 4-14
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WAFER-LX3 3.5" Motherboard
Figure 4-14: Keyboard/Mouse Connector Location
PIN NO. DESCRIPTION
1 +5 V KB DATA 2 MS DATA 3 MS CLK 4 KB DATA 5 KB CLK 6 GROUND
Table 4-14: Keyboard/Mouse Connector Pinouts

4.2.13 LCD LVDS Connector

CN Label: CN29 CN Type: CN Location: CN Pinouts:
The 20-pin LCD LVDS can be connected to a single-channel LCD screen.
20-pin crimp (2x10) See Figure 4-15 See Table 4-15
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WAFER-LX3 3.5" Motherboard
Figure 4-15: TFT LCD LVDS Connector Pinout Locations
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 GND 2 GND 3 D0+ 4 D0­5 D1+ 6 D1­7 D2+ 8 D2­9 CLK+ 10 CLK­11 NC 12 NC 13 GND 14 GND 15 MB_SCL/I_SCL 16 SMB_SDA/I_SDA 17 LCD_Vcc 18 LCD_Vcc 19 LCD_Vcc 20 LCD_Vcc
Table 4-15: LCD LVDS Port Connector Pinouts

4.2.14 LED Connector

CN Label: CN5 CN Type: CN Location:
6-pin wafer (1x6) See Figure 4-16
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CN Pinouts:
See Table 4-16
The LED connector connects to an HDD indicator LED and a power LED on the system chassis to inform the user about HDD activity and the power on/off status of the system.
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WAFER-LX3 3.5" Motherboard
Figure 4-16: LED Connector Locations
PIN NO. DESCRIPTION
1 +5 V 2 GND 3 Power LED+ 4 Power LED­5 HDD LED+ 6 HDD LED-
Table 4-16: LED Connector Pinouts

4.2.15 Print Connector

CN Label: CN15 CN Type: CN Location: CN Pinouts:
The 26-pin print connector connects to a print connector interface or some other parallel port device such as a printer.
26-pin box header See Figure 4-17 See Table 4-17
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WAFER-LX3 3.5" Motherboard
Figure 4-17: Parallel Port Connector Location
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 STROBE# 2 AUTO FORM FEED # 3 DATA 0 4 ERROR# 5 DATA 1 6 INITIALIZE 7 DATA 2 8 PRINTER SELECT LN# 9 DATA 3 10 GROUND 11 DATA 4 12 GROUND 13 DATA 5 14 GROUND 15 DATA 6 16 GROUND 17 DATA 7 18 GROUND 19 ACKNOWLEDGE 20 GROUND 21 BUSY 22 GROUND 23 PAPER EMPTY 24 GROUND 25 PRINTER SELECT 26 N/C
Table 4-17: Parallel Port Connector Pinouts

4.2.16 PC/104 Slot

Page 44
CN Label: CN10 CN Type:
104-pin PC/104 slot
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WAFER-LX3 3.5" Motherboard
CN Location: CN Pinouts:
See Figure 4-18 See Table 4-18
The PC/104 slot enables a PC/104 compatible expansion module to be connected to the board.
Figure 4-18: PC/104 Slot Location
Pin No. Column A Co lumn B Column C Column D
1 IOCHK- GROUND GROUND GROUND 2 SD7 RSTDRV SBHE- MCS16­3 SD6 +5 V SA23 IOCS16­4 SD5 IRQ9 SA22 IRQ10 5 SD4 -5 V SA21 IRQ11 6 SD3 DREQ2 SA20 IRQ12 7 SD2 -12 V SA19 IRQ15 8 SD1 ZWS- SA18 IRQ14 9 SD0 +12 V SA17 DACK0­10 IOCHRDY GROUND MEMR- DREQ0 11 AEN SMEMW- MEMW- DACK5­12 SA19 SMEMR- SD8 DRREQ5 13 SA18 IOW- SD9 DACK6-
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Pin No. Column A Co lumn B Column C Column D
14 SA17 IOR- SD10 DREQ6 15 SA16 DACK3- SD11 DACK7­16 SA15 DREQ3 SD12 DREQ7 17 SA14 DACK1- SD13 +5 V 18 SA13 DREQ1 SD14 MASTER­19 SA12 REFRESH- SD15 GROUND 20 SA11 ISACLK NC GROUND 21 SA10 IRQ7 22 SA9 IRQ6 23 SA8 IRQ5 24 SA7 IRQ4 25 SA6 IRQ3 26 SA5 DACK2-
WAFER-LX3 3.5" Motherboard
27 SA4 TC 28 SA3 BALE 29 SA2 +5 V 30 SA1 ISA_OSC 31 SA0 GROUND 32 GROUND GROUND
Table 4-18: PC/104 Slot Connector Pinouts

4.2.17 PC/104 Power Input Connector

CN Label: CN11 CN Type: CN Location: CN Pinouts:
The PC/104 power input connector provides power to the PC/104 expansion module
3-pin wafer (1x3) See Figure 4-19 See Table 4-19
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installed on the PC/104 slot.
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WAFER-LX3 3.5" Motherboard
Figure 4-19: PC/104 Power Input Connector Pinouts
PIN NO. DESCRIPTION
1 -5 V 2 GND 3 -12 V
Table 4-19: PC/104 Power Input Connector Pinouts

4.2.18 Reset Button Connector

CN Label: CN12 CN Type: CN Location: CN Pinouts:
The reset button connector is connected to a reset switch o n the syst em chassi s to enabl e users to reboot the system when the system is turned on.
2-pin wafer (1x2) See Figure 4-20 See Table 4-20
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Figure 4-20: Reset Button Connector Locations
WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION
1 Reset Switch 2 GND
Table 4-20: Reset Button Connector Pinouts

4.2.19 Serial Port Connector (COM3)

CN Label: CN37 CN Type: CN Location: CN Pinouts:
This pin header supports RS-232 serial communications.
10-pin header (2x5) See Figure 4-21 See Table 4-21
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Figure 4-21: Serial Port Connector Location
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WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 DCD 2 DSR# 3 RXD 4 RTS# 5 TXD 6 CTS# 7 DTR 8 RI# 9 GND 10 GND
Table 4-21: COM3 Pinouts

4.2.20 Serial Port Connector (COM2:RS-232, COM4:RS-422/485)

CN Label: CN20 CN Type: CN Location: CN Pinouts:
14-pin header (2x7) See Figure 4-22 See Table 4-22 and Table 4-23
This pin header connects to the COM2 and COM4 serial communications channels. COM2 supports RS-232 on pins 1-10. COM4 supports RS-422/485 on pins 11-14.
Figure 4-22: RS-232 and RS-422/485 Serial Port Connector Location
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 DCD 2 NDSR2 3 RXD 4 NRTS2 5 TXD 6 NCTS2 7 DTR 8 NRI2
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PIN NO. DESCRIPTION PIN NO. DESCRIPTION
9 GND 10 GND
Table 4-22: COM2 Pinouts
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
11 TXD85+ 12 TXD485# 13 RXD85+ 14 RXD485#
Table 4-23: COM4 Pinouts

4.2.21 TFT LCD Connector

CN Label: CN28
WAFER-LX3 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
40-pin crimp (2x20) See Figure 4-23 See Table 4-24
The 40-pin TFT LCD connector can be connected to an LCD panel directly.
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Figure 4-23: TFT LCD Connector Pinout Locations
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 VCC_FP 2 VCC_FP 3 GROUND 4 GROUND
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WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
5 VCC_FP 6 VCC_FP 7 I_SDA 8 GROUND 9 B0 10 B1 11 B2 12 B3 13 B4 14 B5 15 B6 16 B7 17 G0 18 G1 19 G2 20 G3 21 G4 22 G5 23 G6 24 G7 25 R0 26 R1 27 R2 28 R3 29 R4 30 R5 31 R6 32 R7 33 GROUND 34 GROUND 35 FPCLK 36 FPVS 37 FPDEN 38 FPHS 39 I_SCL 40 ENVEE
Table 4-24: TFT LCD Port Connector Pinouts

4.2.22 USB Connector (Internal)

CN Label: CN24 CN Type: CN Location: CN Pinouts:
The 2x4 USB pin connector provides connectivity to two USB 1.1 or two USB 2.0 ports. The USB connector supports two USB devices. Additional external USB ports are found
8-pin header (2x4) See Figure 4-24 See Table 4-25
on the rear panel. The USB ports are used for I/O bus expansion.
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Figure 4-24: USB Connector Pinout Locations
WAFER-LX3 3.5" Motherboard
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 VCC 2 GND 3 DATA- 4 DATA+ 5 DATA+ 6 DATA­7 GND 8 VCC
Table 4-25: USB Port Connector Pinouts

4.3 External Peripheral Interface Connector Panel

Figure 4-25 shows the WAFER-LX3 external peripheral interface connector (EPIC) panel.
The WAFER-LX3 EPIC panel consists of the following:
2 x RJ-45 Ethernet connectors  1 x DB-9 RS-232 serial port connector  2 x USB connectors  1 x VGA connector
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WAFER-LX3 3.5" Motherboard
Figure 4-25: WAFER-LX3 External Peripheral Interface Connector

4.3.1 LAN Connectors

CN Label: CN33 and CN34 CN Type: CN Location: CN Pinouts:
The WAFER-LX3 is equipped with two built-in RJ-45 Ethernet controllers. The controllers can connect to the LAN through two RJ-45 LAN connectors. There are two LEDs on the connector indicating the status of LAN. The pin assignments are listed in the following table:
PIN DESCRIPTION PIN DESCRIPTION
1 TXD+ 5 NC 2 NC 6 RX­3 TXD- 7 NC 4 RX+ 8 NC
Table 4-26: LAN Pinouts
RJ-45 See Figure 4-25 See Table 4-26
Figure 4-26: RJ-45 Ethernet Connector
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The RJ-45 Ethernet connector has two status LEDs, one green and one yello w. The green LED indicates activity on the port and the yellow LED indicates the port is linked. See Table 4-27.
STATUS DESCRIPTION STATUS DESCRIPTION
Green Activity YELLOW Linked
Table 4-27: RJ-45 Ethernet Connector LEDs

4.3.2 Serial Port Connector

CN Label: CN23
WAFER-LX3 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
DB-9 connectors See Figure 4-25 See Table 4-28 and Figure 4-27
The 9-pin DB-9 COM1 serial port connector is connected to RS-232 serial communications devices.
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 DCD 6 DSR 2 RX 7 RTS 3 TX 8 CTS 4 DTR 9 RI 5 GND
Table 4-28: RS-232 Serial Port (COM 1) Pinouts
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Figure 4-27: COM1 Pinout Locations
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WAFER-LX3 3.5" Motherboard

4.3.3 USB Connector

CN Label: CN19 CN Type: CN Location: CN Pinouts:
The WAFER-LX3 has four external USB 2.0 ports. The ports connect to both USB 2.0 and USB 1.1 devices.
PIN NO. DESCRIPTION PIN NO. DESCRIPTION
1 VCC 5 VCC 2 Data- 6 Data­3 Data+ 7 Data+ 4 Ground 8 Ground
Table 4-29: USB Port Pinouts
USB port See Figure 4-25 See Table 4-29

4.3.4 VGA Connector

CN Label: CN26 CN Type: CN Location: CN Pinouts:
The WAFER-LX3 has a single 15-pin female connector for connectivity to standard display devices.
Figure 4-28: VGA Connector
15-pin Female See Figure 4-25 See Figure 4-28 and Table 4-30
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PIN DESCRIPTION PIN DESCRIPTION
1 RED 2 GREEN 3 BLUE 4 NC 5 GND 6 GND 7 GND 8 GND 9 VCC 10 GND 11 NC 12 DDC DAT 13 HSYNC 14 VSYNC 15 DDCCLK
WAFER-LX3 3.5" Motherboard
Table 4-30: VGA Connector Pinouts
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WAFER-LX3 3.5" Motherboard
Chapter
5

5 Installation

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5.1 Anti-static Precautions

WARNING:
Failure to take ESD precautions during the installation of the WAFER-LX3 may result in permanent damage to the WAFER-LX3 and severe injury to the user.
Electrostatic discharge (ESD) can cause serious damage to electronic components, including the WAFER-LX3. Dry climates are especially susceptible to ESD. It is therefore critical that whenever the WAFER-LX3, or any other electrical component is handled, the following anti-static precautions are strictly adhered to.
Wear an anti-static wristband: - Wearing a simple anti-static wristband can
WAFER-LX3 3.5" Motherboard
help to prevent ESD from damaging the board.
Self-grounding:- Before handling the board touch any grounded conducting
material. During the time the board is handled, frequently touch any conducting materials that are connected to the ground.
Use an anti-static pad: When configuring the WA FER-LX3, place it on an
antic-static pad. This reduces the possibility of ESD damaging the WAFER-LX3.
Only handle the edges of the PCB:-: When handling the PCB, hold the PCB
by the edges.
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WAFER-LX3 3.5" Motherboard

5.2 Installation Considerations

NOTE:
The following installation notices and installation considerations should be read and understood before the WAFER-LX3 is installed. All installation notices pertaining to the installation of the WAFER-LX3 should be strictly adhered to. Failing to adhere to these precautions may lead to severe damage of the WAFER-LX3 and injury to the person installing the motherboard.

5.2.1 Installation Notices

WARNING:
The installation instructions described in this manual should be carefully followed in order to prevent damage to the WAFER-LX3, WAFER-LX3 components and injury to the user.
Before and during the installation please DO the following:
Read the user manual:
o The user manual provides a complete description of the WAFER-LX3
installation instructions and configuration options.
Wear an electrostatic discharge cuff (ESD):
o Electronic components are easily damaged by ESD. Wearing an ESD cuff
removes ESD from the body and helps prevent ESD damage.
Place the WAFER-LX3 on an antistatic pad:
o When installing or configuring the motherboard, place it on an antistatic
pad. This helps to prevent potential ESD damage.
Turn all power to the WAFER-LX3 off:
o When working with the WAFER-LX3, make sure that it is disconnected
from all power supplies and that no electricity is being fed into the system.
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Before and during the installation of the WAFER-LX3 DO NOT:
Remove any of the stickers on the PCB board. These stickers are required for
warranty validation.
Use the product before verifying all the cables and power connectors are
properly connected.
Allow screws to come in contact with the PCB circuit, connector pins, or its
components.

5.2.2 Installation Checklist

The following checklist is provided to ensure the WAFER-LX3 is properly installed.
All the items in the packing list are present  The CPU is installed  The CPU cooling kit is properly installed
WAFER-LX3 3.5" Motherboard
A compatible memory module is properly inserted into the slot  The CF Type I or CF Type II card is properly installed into the CF socket  The jumpers have been properly configured  The WAFER-LX3 is inserted into a chassis with ade quate ventilation  The correct power supply is being used  The following devices are properly connected
o Keyboard and mouse cable o Audio kit o Power supply o USB cable o Serial port cable
The following external peripheral devices are properly connected to the
chassis:
o VGA screen o USB devices o LAN
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WAFER-LX3 3.5" Motherboard

5.3 Unpacking

5.3.1 Unpacking Precautions

When the WAFER-LX3 is unpacked, please do the following:
Follow the anti-static precautions outlined in Section Make sure the packing box is facing upwards so the WAFER-LX3 does not fall
out of the box.
Make sure all the packing list parts are present
NOTE:
If any packing list components are missing, please do not proceed with the installation. Contact the IEI reseller or vendor you purchased the WAFER-LX3 from or contact an IEI sales representative directly. To contact an IEI sales representative, please send an email to sales@iei.com.tw.

5.3.2 CF Card Installation

NOTE:
5.1.
The WAFER-LX3 can support both CF Type I cards and CF Type II cards. For the complete specifications of the supported CF cards please refer to Chapter 2.
To install the a CF card (Type 1 or Type 2) onto the WAFER-LX3, please follow the steps below:
Step 1: Locate the CF card socket. Place the WAFER-LX3 on an anti-static pad with
the solder side facing up. Locate the CF card.
Step 2: Align the CF card. Make sure the CF card is properly aligned with the CF
socket.
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Step 3: Insert the CF card. Gently insert the CF card into the socket making sure the
WAFER-LX3 3.5" Motherboard
socket pins are properly inserted into the socket. See
Figure 5-1. Step 3:
Figure 5-1: CF Card Installation
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WAFER-LX3 3.5" Motherboard

5.4 Jumper Settings

NOTE:
A jumper is a metal bridge that is used to close an electrical circuit. It consists of two metal pins and a small metal clip (often protected by a plastic cover) that slides over the pins to connect them. To CLOSE/SHORT a jumper means connecting the pins of the jumper with the plastic clip and to OPEN a jumper means removing the plastic clip from a jumper.
Before the WAFER-LX3 is installed in the system, the jumpers must be set in accordance with the desired configuration. The jumpers on the WAFER-LX3 are listed in
Description Label Type
AT/ATX Power Mode Select JP3 3-pin header Compact Flash Mode Select JP4 3-pin header Clear CMOS connector CN7 2-pin wafer COM1 & COM2 RI and Voltage Selection JP8 10-pin header LCD Panel Shift Clock Setting JP1 3-pin header
Jumper
Table 5-1.
LCD Panel Voltage Select JP2 3-pin header RS-422/485 Mode Select JP7 3-pin header
Table 5-1: Jumpers

5.4.1 AT Power Select Jumper Settings

Jumper Label: JP3 Jumper Type:
3-pin header
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WAFER-LX3 3.5" Motherboard
Jumper Settings: Jumper Location:
The AT Power Select jumper specifies the systems power mode as AT or ATX. AT Power Select jumper settings are shown in
Pin Description
1-2 Use AT power Default 2-3 Use ATX power
Table 5-2: AT Power Select Jumper Settings
The location of the AT Power Select jumper is shown in Figure 5-2 below.
See Table 5-2 See Figure 5-2
Table 5-2.
Figure 5-2: AT Power Select Jumper Location

5.4.2 CF Card Setup

Jumper Label: JP4 Jumper Type: Jumper Settings: Jumper Location:
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3-pin header See Table 5-3 See Figure 5-3
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WAFER-LX3 3.5" Motherboard
The CF Card Setup jumper sets the CF Type I card or CF Type II cards as either the slave device or the master device. CF Card Setup jumper settings are shown in
Pin Description
Short 1-2 Master Short 2-3 Slave Default
Table 5-3: CF Card Setup Jumper Settings
The CF Card Setup jumper location is shown in Figure 5-3.
Table 5-3.
Figure 5-3: CF Card Setup Jumper Location

5.4.3 Clear CMOS

Jumper Label: CN7 Jumper Type: Jumper Settings: Jumper Location:
If the WAFER-LX3 fails to boot due to improper BIOS settings, the CMOS can be cleared using the battery connector. Disconnect the battery from the connector for a few seconds then reconnect the battery. The CMOS should be cleared.
If the “CMOS Settings Wrong” message is displayed during the boot up process, the fault may be corrected by pressing the F1 to enter the CMOS Setup menu. Do one of the
2-pin wafer See Table 5-4 See Figure 5-4
following:
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Enter the correct CMOS setting  Load Optimal Defaults  Load Failsafe Defaults.
After having done one of the above, save the changes and exit the CMOS Setup menu.
WAFER-LX3 3.5" Motherboard
The clear CMOS jumper settings are shown in
Pin Description
Short Keep CMOS S etup Default Open Clear CMOS Setup
Table 5-4: CN7 Clear CMOS Jumper Settings
The location of the clear CMOS jumper is shown in Figure 5-4 below.
Table 5-4.
Figure 5-4: Clear CMOS Jumper

5.4.4 COM 1/2 Pin 9 Setting Jumper

Jumper Label: JP8
10-pin header See Table 5-5 See Figure 5-5
Table 5-5.
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Jumper Type: Jumper Settings: Jumper Location:
The COM 1/2 Pin 9 Setting jumper configures pin 9 on COM 1 and COM 2 as either a +5 V, +12 V power source or as a ring-in (RI) line. The COM 1/2 Pin 9 Setting jumper selection options are shown in
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WAFER-LX3 3.5" Motherboard
Pin Description
1–3 COM 1 RI Pin use +12 V 3–5 COM 1 RI Pin use +5 V 7–9 COM 1 RI Pin use RI Default 2–4 COM 2 RI Pin use +12 V 4–6 COM 2 RI Pin use +5 V 8–10 COM 2 RI Pin use RI Default
Table 5-5: COM 1/2 Pin 9 Setting Jumper Settings
The COM 1/2 Pin 9 Setting jumper location is shown in Figure 5-5 below.
Figure 5-5: COM 1/2 Pin 9 Setting Jumper Location

5.4.5 LCD Panel Shift Clock Setting

WARNING:
Permanent damage to the screen and WAFER-LX3 may occur if the wrong polarity is set with this jumper. Please refer to the user guide that came with the monitor to select the correct polarity.
Jumper Label: JP1 Jumper Type: Jumper Settings:
3-pin header See Table 5-6
Jumper Location:
See Figure 5-6
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The LCD Panel Shift Clock Setting jumper allows the polarity of the LCD screen clock to
WAFER-LX3 3.5" Motherboard
be set. The LCD Panel Shift Clock Setting jumper settings are shown in
Pin Description
Short 1-2 Positive polarity (normal) Default Short 2-3 Negative polarity (invert)
Table 5-6: LCD Panel Shift Clock Setting
The LCD Voltage Selection jumper location. is shown in Figure 5-7.
Table 5-6.
Figure 5-6: LCD Panel Shift Clock Setting Jumper Location

5.4.6 LCD Voltage Selection

WARNING:
Permanent damage to the screen and WAFER-LX3 may occur if the wrong voltage is selected with this jumper. Please refer to the user guide that came with the monitor to select the correct voltage.
Jumper Label: JP2 Jumper Type: Jumper Settings: Jumper Location:
3-pin header See Table 5-7 See Figure 5-7
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WAFER-LX3 3.5" Motherboard
The LCD Voltage Selection jumper allows the LCD screen voltage to be set. The LCD Voltage Selection jumper settings are shown in
Pin Description
1-2 +3.3 V LVDS Default 2-3 +5 V LVDS
Table 5-7.
Table 5-7: LCD Voltage Selection Jumper Settings
The LCD Voltage Selection jumper location. is shown in Figure 5-7.
Figure 5-7: LCD Voltage Selection Jumper Location

5.4.7 RS-422/485 Serial Port Select Jumper

Jumper Label: JP7 Jumper Type: Jumper Settings: Jumper Location:
The RS-422/485 Serial Port Select jumper configures the serial port connector as an RS-422 serial port or as an RS-485 serial port. The RS-422/485 Serial Port Select jumper selection options are shown in
Pin Description
1–2 RS-422 Default
3-pin header See Table 5-8 See Figure 5-8
Table 5-8.
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Pin Description
3–4 RS-485
Table 5-8: Serial Port Mode Select Jumper Settings
The RS-422/485 Serial Port Select jumper location is shown in Figure 5-8 below.
WAFER-LX3 3.5" Motherboard
Figure 5-8: Serial Port Mode Select Jumper Pinout Locations

5.5 Chassis Installation

5.5.1 Airflow

WARNING:
Airflow is critical to the cooling of the CPU and other onboard components. The chassis in which the WAFER-LX3 must have air vents to allow cool air to move into the system and hot air to move out.
The WAFER-LX3 must be installed in a chassis with ventilation holes on the sides allowing airflow to travel through the heat sink surface. In a system with an individual power supply unit, the cooling fan of a power supply can also help generate airflow
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through the board surface.
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WAFER-LX3 3.5" Motherboard
NOTE:
IEI has a wide range of backplanes available. Please contact your WAFER-LX3 vendor, reseller or an IEI sales representative at sales@iei.com.tw or visit the IEI website (http://www.ieiworld.com.tw) to find out more about the available chassis.

5.6 Internal Peripheral Device Connections

5.6.1 Peripheral Device Cables

The cables listed in Table 5-9 are shipped with the WAFER-LX3.
Quantity Type
1 Audio cable 1 IDE flat cable 1 RS-232/422/485 cable 1 PS/2 Y-cable 1 USB cable
Table 5-9: IEI Provided Cables
Installation of the accessories listed above are described in detail below.

5.6.2 ATA Flat Cable Connection

The ATA 66/100 flat cable connects to the WAFER-LX3 to one or two IDE devices. To connect an IDE HDD to the WAFER-LX3 please follow the instructions below.
Step 4: Locate the IDE connector. The location/s of the IDE device connector/s is/are
shown in Chapter 3.
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Step 5: Insert the connector. Connect the IDE cable connector to the onboard
WAFER-LX3 3.5" Motherboard
connector. See can only be inserted in one direction.
Figure 5-9. A key on the front of the cable connector ensures it
Figure 5-9: IDE Cable Connection
Step 6: Connect the cable to an IDE device. Connect the two connectors on the other
side of the cable to one or two IDE devices. Make sure that pin 1 on the cable corresponds to pin 1 on the connector. Step 0:

5.6.3 Keyboard/Mouse Y-cable Connector

The WAFER-LX3 is shipped with a keyboard/mouse Y-cable connector. The keyboard/mouse Y-cable connector connects to a keyboard/mouse connector on the WAFER-LX3 and branches into two cables that are each connected to a PS/2 connector, one for a mouse and one for a keyboard. To connect the keyboard/mouse Y-cable connector please follow the steps below.
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WAFER-LX3 3.5" Motherboard
Step 1: Locate the connector. The location of the keyboard/mouse Y-cable connector
is shown in Chapter 3.
Step 2: Align the connectors. Correctly align pin 1 on the cable connector with pin 1 on
the WAFER-LX3 keyboard/mouse co nnector. See
Step 3: Insert the cable connectors. Once the cable connector is p rope rly aligne d wit h
the keyboard/mouse connector on the WAFER-LX3, connect the cable connector to the onboard connectors. See
Figure 5-10.
Figure 5-10.
Figure 5-10: Keyboard/mouse Y-cable Connection
Step 4: Attach PS/2 connectors to the chassis. The keyboard/mouse Y-cable
connector is connected to two PS/2 connectors. To secure the PS/2 connectors to the chassis please refer to the installation instructions that came with the chassis.
Step 5: Connect the keyboard and mouse. Once the PS/2 connectors are connected
to the chassis, a keyboard and mouse can each be connected to one of the
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PS/2 connectors. The keyboard PS/2 connector and mouse PS/2 connector are both marked. Please make sure the keyboard and mouse are connected to the correct PS/2 connector. Step 0:

5.6.4 Parallel Port Cable without Bracket

The optional parallel port (LPT) cable respectively connects the onboard LPT 26-pin box header to an external LPT device (like a printer). The cable comprises a 26-pin female header, to be connected to the onboard LPT box-header, on one side and on the other side a standard external LPT connector. To connect the LPT cable, please follow the steps below.
Step 1: Locate the connector. The LPT con nector location is shown in Chapter 4.
Step 2: Align the connectors. Correctly align pin 1 on the cable connector with pin 1 on
WAFER-LX3 3.5" Motherboard
the PCIE-9452 LPT box-header connector. See
Step 3: Insert the cable connectors. Once the cable connector is p rope rly aligne d wit h
the 26-pin box-header connector on the PCIE-9452, connect the cable connector to the onboard connector. See
Figure 5-11: LPT Cable Connection
Step 4: Attach the LPT connector to the chassis. To secure the LPT interface
Figure 5-11.
Figure 5-11.
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connector to the chassis please refer to the installation instructions that came with the chassis.
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WAFER-LX3 3.5" Motherboard
Step 5: Connect LPT device. Once the LPT interface connector is co nnected to the
chassis, the LPT device can be connected to the LPT interface connector. See
Figure 5-12Step 5:\
Figure 5-12: Connect the LPT Device

5.6.5 Dual RS-232 Cable Connection (w/o bracket)

The dual RS-232/422/485 cable consists of two connectors attached to two independent cables. Each cable is then attached to a D-sub 9-pin male connector. One DB-9 conne ctor is reserved for RS-232 connectivity, the other DB-9 connector is reserved for RS-422/485 connectivity depending on the jumper settings. To install the dual RS-232/422/485 cable, please follow the steps below.
Step 6: Locate the connectors. The locations of the RS-232/422/48 5 connectors are
shown in Chapter 3.
Step 7: Insert the cable connectors. Insert one connector into each serial port box
headers. A key on the front of the cable connectors ensures the connector can only be installed in one direction.
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Figure 5-13: Dual RS-232 Cable Installation
WAFER-LX3 3.5" Motherboard
Step 8: Secure the connectors. Both the RS-232 and RS-422/485 connectors have
two retention screws that must be secured to a chassis or bracket.
Step 9: Connect the serial device. Once the DB-9 connectors are connected to a
chassis or bracket, a serial communications device can be connected to the system. Step 0:

5.6.6 USB Cable (Dual Port without Bracket)

The WAFER-LX3 is shipped with a dual port USB 2.0 cable. To connect the USB cable connector, please follow the steps below.
Step 1: Locate the connectors. The locations of the USB connectors are shown in
Chapter 3.
WARNING:
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If the USB pins are not properly aligned, the USB device can burn out.
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WAFER-LX3 3.5" Motherboard
Step 2: Align the connectors. The cable has two connectors. Correctly align pin 1on
each cable connector with pin 1 on the WAFER-LX3 USB con nector.
Step 3: Insert the cable connectors. Once the cable connectors are properly aligned
with the USB connectors on the WAFER-LX3, connect the cable connectors to the onboard connectors. See
Figure 5-14: Dual USB Cable Connection
Step 4: Attach the USB connectors to the cha ssis. The USB 2.0 connectors each of
two retention screw holes. To secure the connectors to the chassis please refer
Figure 5-14.
to the installation instructions that came with the chassis.Step 0:

5.7 External Peripheral Interface Connection

The following external peripheral devices can be connected to the external peripheral interface connectors.
RJ-45 Ethernet cable connectors  USB device cable connectors  VGA device cable connectors
To install these devices, connect the corresponding cable connector from the actual device to the corresponding WAFER-LX3 external peripheral interface connector making sure the pins are properly aligned.
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5.7.1 LAN Connection (Single Connector)

There are two external RJ-45 LAN connectors. The RJ-45 connectors enable connection to an external network. To connect a LAN cable with an RJ-45 connector, please follow the instructions below.
Step 1: Locate the RJ-45 connectors. The locations of the USB connecto rs are shown
in Chapter 4.
Step 2: Align the connectors. Align the RJ-45 connector on the LAN cable with one of
WAFER-LX3 3.5" Motherboard
the RJ-45 connectors on the WAFER-L X 3. See
Figure 5-15: LAN Connection
Figure 5-15.
Step 3: Insert the LAN cable RJ-45 connector. Once aligned, gently insert the LAN
cable RJ-45 connector into the onboard RJ-45 connector. Step 0:

5.7.2 Serial Device Connection

The WAFER-LX3 has a single female DB-9 connector on the external peripheral interface panel for a serial device. Follow the steps below to connect a serial device to the WAFER-LX3.
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WAFER-LX3 3.5" Motherboard
Step 1: Locate the DB-9 connector. The location of the DB-9 connector is shown in
Chapter 3.
Step 2: Insert the serial connector. Insert the DB-9 connector of a serial device into
the DB-9 connector on the external peripheral interface. See
Figure 5-16.
Figure 5-16: Serial Device Connector
Step 3: Secure the connector. Secure the serial device connector to the external
interface by tightening the two retention screws on either side of the connector.

5.7.3 USB Device Connection (Single Connector)

There are two external USB 2.0 connectors. Both connectors are perpendicular to the WAFER-LX3. To connect a USB 2.0 or USB 1.1 device, please follow the instructions below.
Step 1: Located the USB connectors. The locations of the USB connectors are shown
in Chapter 4.
Step 0:
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Step 2: Align the connectors. Align the USB device connector with one of the
WAFER-LX3 3.5" Motherboard
connectors on the WAFER-LX3. See
Figure 5-17.
Figure 5-17: USB Device Connection
Step 3: Insert the device connector. Once aligned, gently insert the USB device
connector into the onboard connector. Step 0:

5.7.4 VGA Monitor Connection

The WAFER-LX3 has a single female DB-15 connector on the external peripheral interface panel. The DB-15 connector is connected to a CRT or VGA monitor. To connect a monitor to the WAFER-LX3, please follow the instructions below.
Step 1: Locate the female DB-15 connector. The location of the female DB-15
connector is shown in Chapter 3.
Step 2: Align the VGA connector. Align the male DB-15 connector on the VGA screen
cable with the female DB-15 connector on the external peripheral interface.
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WAFER-LX3 3.5" Motherboard
Step 3: Insert the VGA connector. Once the conne ctors are prop erly aligned with the
insert the male connector from the VGA screen into the female connector on the WAFER-LX3. See
Figure 5-18: VGA Connector
Figure 5-18.
Step 4: Secure the connector. Secure the DB-15 VGA connector from the VGA
monitor to the external interface by tightening the two retention screws on either side of the connector. Step 0:
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WAFER-LX3 3.5" Motherboard
Chapter
6

6 BIOS

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