IEI Integration WAFER-945GSE2 User Manual

WAFER-945GSE2 3.5" Motherboard
IEI Technology Corp.
MODEL:
WAFER-945GSE2
3.5" SBC with 1.6 HGz Intel® Atom™ N270, VGA/LVDS, Dual PCIe GbE, CF Type II, USB, SATA,
On-board 1 GB Memory and PC/104
User Manual
Rev. 2.00 – 28 October, 2011
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WAFER-945GSE2 3.5" Motherboard
Revision
Date Version Changes
28 October, 2011
20 September, 2011 1.03 Updated section 1.5 Data Flow
25 June, 2009 1.02 New photographs added
11 March, 2009 1.01 Model name update
17 February, 2009 1.00 Initial release
2.00 Updated for R20 version
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WAFER-945GSE2 3.5" Motherboard
COPYRIGHT NOTICE
The information in this document is subject to change without prior notice in order to improve reliability, design and function and does not represent a commitment on the part of the manufacturer.
In no event will the manufacturer be liable for direct, indirect, special, incidental, or consequential damages arising out of the use or inability to use the product or documentation, even if advised of the possibility of such damages.
This document contains proprietary information protected by copyright. All rights are
Copyright
reserved. No part of this manual may be reproduced by any mechanical, electronic, or other means in any form without prior written permission of the manufacturer.
TRADEMARKS
All registered trademarks and product names mentioned herein are used for identification purposes only and may be trademarks and/or registered trademarks of their respective owners.
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WAFER-945GSE2 3.5" Motherboard
Table of Contents
1 INTRODUCTION.......................................................................................................... 1
1.1 INTRODUCTION........................................................................................................... 2
1.2 MODEL VARIATIONS ................................................................................................... 2
1.3 CONNECTORS ............................................................................................................. 3
1.4 DIMENSIONS............................................................................................................... 5
1.4.1 Board Dimensions.............................................................................................. 5
1.4.2 External Interface Panel Dimensions................................................................ 6
1.5 DATA FLOW................................................................................................................ 7
1.6 TECHNICAL SPECIFICATIONS ...................................................................................... 8
2 PACKING LIST........................................................................................................... 10
2.1 ANTI-STATIC PRECAUTIONS.......................................................................................11
2.2 UNPACKING PRECAUTIONS........................................................................................11
2.3 PACKING LIST........................................................................................................... 12
2.4 OPTIONAL ITEMS...................................................................................................... 13
3 CONNECTORS ........................................................................................................... 14
3.1 PERIPHERAL INTERFACE CONNECTORS..................................................................... 15
3.1.1 W AFER-945GSE2 Layout................................................................................ 15
3.1.2 Peripheral Interface Connectors ..................................................................... 16
3.1.3 External Interface Panel Connectors............................................................... 17
3.2 INTERNAL PERIPHERAL CONNECTORS...................................................................... 17
3.2.1 ATX Power Connector ..................................................................................... 17
3.2.2 ATX Power Supply Enable Connector............................................................. 18
3.2.3 Audio Connector (10-pin)................................................................................ 19
3.2.4 Backlight Inverter Connector .......................................................................... 20
3.2.5 Battery Connector............................................................................................ 21
3.2.6 CompactFlash® Socket.................................................................................... 22
3.2.7 Digital Input/Output (DIO) Connector............................................................ 23
3.2.8 Fan Connector (+12V, 3-pin) .......................................................................... 24
3.2.9 Keyboard/Mouse Connector............................................................................ 25
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WAFER-945GSE2 3.5" Motherboard
3.2.10 LED Connector.............................................................................................. 26
3.2.11 LVDS LCD Connector.................................................................................... 27
3.2.12 PC/104 Connector ......................................................................................... 28
3.2.13 PC/104 Power Input Connector..................................................................... 29
3.2.14 Power Button Connector................................................................................ 30
3.2.15 Reset Button Connector ................................................................................. 31
3.2.16 SATA Drive Connectors ................................................................................. 31
3.2.17 Serial Port Connector, RS-232/422/485 ........................................................ 32
3.2.18 SPI Flash Connector...................................................................................... 33
3.2.19 USB Connectors (Internal)............................................................................ 34
3.3 EXTERNAL PERIPHERAL INTERFACE CONNECTOR PANEL ......................................... 35
3.3.1 Ethernet Connectors ........................................................................................ 36
3.3.2 Serial Port Connectors (COM1)...................................................................... 37
3.3.3 USB Connectors............................................................................................... 37
3.3.4 VGA Connector................................................................................................ 38
4 INSTALLATION ......................................................................................................... 39
4.1 ANTI-STATIC PRECAUTIONS...................................................................................... 40
4.2 INSTALLATION CONSIDERATIONS.............................................................................. 40
4.3 CF CARD INSTALLATION .......................................................................................... 41
4.4 JUMPER SETTINGS .................................................................................................... 43
4.4.1 AT/ATX Power Select Jumper.......................................................................... 43
4.4.2 CF Card Setup ................................................................................................. 44
4.4.3 Clear CMOS Jumper........................................................................................ 45
4.4.4 COM 2 Function Select Jumper....................................................................... 46
4.4.5 LVDS Voltage Selection.................................................................................... 47
4.5 CHASSIS INSTALLATION............................................................................................ 48
4.5.1 Airflow.............................................................................................................. 48
4.5.2 Motherboard Installation................................................................................. 49
4.6 INTERNAL PERIPHERAL DEVICE CONNECTIONS........................................................ 49
4.6.1 SATA Drive Connection ................................................................................... 49
4.6.2 Dual RS-232 Cable Connection (w/o bracket) (Optional) .............................. 51
4.6.3 Keyboard/Mouse Y-cable Connector ............................................................... 52
4.6.4 Audio Kit Installation....................................................................................... 54
4.6.5 PC/104 Module Installation............................................................................. 54
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4.6.6 USB Cable (Dual Port without Bracket) (Optional)........................................ 55
4.7 EXTERNAL PERIPHERAL INTERFACE CONNECTION ................................................... 56
4.7.1 LAN Connection............................................................................................... 57
4.7.2 Serial Device Connection ................................................................................ 57
4.7.3 USB Connection (Dual Connector)................................................................. 58
4.7.4 VGA Monitor Connection ................................................................................ 59
5 BIOS.............................................................................................................................. 61
5.1 INTRODUCTION......................................................................................................... 62
5.1.1 Starting Setup................................................................................................... 62
5.1.2 Using Setup...................................................................................................... 62
5.1.3 Getting Help..................................................................................................... 63
5.1.4 Unable to Reboot after Configuration Changes.............................................. 63
5.1.5 BIOS Menu Bar................................................................................................ 63
5.2 MAIN........................................................................................................................ 64
WAFER-945GSE2 3.5" Motherboard
5.3 ADVANCED ............................................................................................................... 65
5.3.1 CPU Configuration.......................................................................................... 66
5.3.2 IDE Configuration........................................................................................... 67
5.3.2.1 IDE Master, IDE Slave............................................................................. 68
5.3.3 Super IO Configuration ................................................................................... 73
5.3.4 Hardware Health Configuration...................................................................... 74
5.3.5 Power Configuration ....................................................................................... 78
5.3.5.1 ACPI configuration ................................................................................... 79
5.3.5.2 APM Configuration................................................................................... 80
5.3.6 Remote Access Configuration.......................................................................... 82
5.3.7 USB Configuration........................................................................................... 85
5.3.8 iEi Feature....................................................................................................... 86
5.4 PCI/PNP................................................................................................................... 87
5.5 BOOT........................................................................................................................ 90
5.5.1 Boot Settings Configuration............................................................................. 90
5.5.2 Boot Device Priority........................................................................................ 92
5.6 SECURITY................................................................................................................. 93
5.7 CHIPSET ................................................................................................................... 94
5.7.1 North Bridge Chipset Configuration ............................................................... 94
5.7.2 South Bridge Chipset Configuration................................................................ 98
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WAFER-945GSE2 3.5" Motherboard
5.8 EXIT......................................................................................................................... 99
6 SOFTWARE DRIVERS............................................................................................ 101
6.1 AVAILABLE SOFTWARE DRIVERS ............................................................................ 102
6.2 ST ARTING THE DRIVER PROGRAM .......................................................................... 102
6.3 CHIPSET DRIVER INSTALLATION............................................................................. 104
6.4 VGA DRIVER INSTALLATION.................................................................................. 108
6.5 LAN DRIVER INSTALLATION...................................................................................113
6.6 AUDIO DRIVER INSTALLATION ................................................................................115
A BIOS OPTIONS .........................................................................................................118
B ONE KEY RECOVERY........................................................................................... 121
B.1 ONE KEY RECOVERY INTRODUCTION ....................................................................122
B.1.1 System Requirement....................................................................................... 123
B.1.2 Supported Operating System......................................................................... 124
B.2 SETUP PROCEDURE FOR WINDOWS........................................................................ 125
B.2.1 Hardware and BIOS Setup ............................................................................ 125
B.2.2 Create Partitions........................................................................................... 126
B.2.3 Install Operating System, Drivers and Applications..................................... 129
B.2.4 Build-up Recovery Partition.......................................................................... 130
B.2.5 Create Factory Default Image....................................................................... 132
B.3 SETUP PROCEDURE FOR LINUX.............................................................................. 137
B.4 RECOVERY TOOL FUNCTIONS ................................................................................ 140
B.4.1 Factory Restore............................................................................................. 142
B.4.2 Backup System............................................................................................... 143
B.4.3 Restore Your Last Backup.............................................................................. 144
B.4.4 Manual........................................................................................................... 145
B.5 OTHER INFORMATION ............................................................................................ 146
B.5.1 Using AHCI Mode or ALi M5283 / VIA VT6421A Controller....................... 146
B.5.2 System Memory Requirement ........................................................................ 148
C TERMINOLOGY ..................................................................................................... 149
D DIGITAL I/O INTERFACE..................................................................................... 153
D.1 INTRODUCTION...................................................................................................... 154
D.2 DIO CONNECTOR PINOUTS ................................................................................... 154
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D.3 ASSEMBLY LANGUAGE SAMPLES........................................................................... 154
D.3.1 Enable the DIO Input Function .................................................................... 154
D.3.2 Enable the DIO Output Function.................................................................. 155
E WATCHDOG TIMER............................................................................................... 156
F HAZARDOUS MATERIALS DISCLOSURE........................................................ 159
F.1 HAZARDOUS MATERIALS DISCLOSURE TABLE FOR IPB PRODUCTS CERTIFIED AS
ROHS COMPLIANT UNDER 2002/95/EC WITHOUT MERCURY..................................... 160
WAFER-945GSE2 3.5" Motherboard
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WAFER-945GSE2 3.5" Motherboard
List of Figures
Figure 1-1: WAFER-945GSE2........................................................................................................2
Figure 1-2: Connectors ..................................................................................................................3
Figure 1-3: WAFER-945GSE2 Dimensions (mm).........................................................................6
Figure 1-4: External Interface Panel Dimensions (mm)..............................................................6
Figure 1-5: Data Flow Diagram......................................................................................................7
Figure 3-1: Connectors and Jumpers (Front Side) ...................................................................15
Figure 3-2: Connectors and Jumpers (Solder Side) .................................................................15
Figure 3-3: ATX Power Connector Location..............................................................................17
Figure 3-4: ATX Power Supply Enable Connector Location....................................................18
Figure 3-5: Audio Connector Pinouts (10-pin)...........................................................................19
Figure 3-6: Panel Backlight Connector Location......................................................................20
Figure 3-7: Battery Connector Location.....................................................................................21
Figure 3-8: CF Card Socket Location .........................................................................................22
Figure 3-9: Digital I/O Connector Location ................................................................................23
Figure 3-10: +12V Fan Connector Location...............................................................................24
Figure 3-11: Keyboard/Mouse Connector Location..................................................................25
Figure 3-12: LED Connector Location........................................................................................26
Figure 3-13: LVDS LCD Connector Pinout Locations...............................................................27
Figure 3-14: PC/104 Connector...................................................................................................28
Figure 3-15: PC/104 Power Input Connector Pinouts...............................................................30
Figure 3-16: Power Button Connector Location........................................................................30
Figure 3-17: Reset Button Connector Location.........................................................................31
Figure 3-18: SATA Drive Connector Locations.........................................................................32
Figure 3-19: RS-232/422/485 Serial Port Connector Location..................................................33
Figure 3-20: SPI Flash Connector...............................................................................................34
Figure 3-21: USB Connector Pinout Locations.........................................................................35
Figure 3-22: External Peripheral Interface Connector..............................................................35
Figure 3-23: RJ-45 Ethernet Connector......................................................................................36
Figure 3-24: COM1 Pinout Locations..........................................................................................37
Figure 3-25: VGA Connector .......................................................................................................38
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Figure 4-1: CF Card Installation..................................................................................................42
Figure 4-2: AT/ATX Power Select Jumper Location..................................................................44
Figure 4-3: CF Card Setup Jumper Location.............................................................................45
Figure 4-4: Clear BIOS Jumper Location ...................................................................................46
Figure 4-5: COM 2 Function Select Jumper Location...............................................................47
Figure 4-6: LVDS Voltage Selection Jumper Pinout Locations...............................................48
Figure 4-7: SATA Drive Cable Connection.................................................................................50
Figure 4-8: SATA Power Cable Connection...............................................................................51
Figure 4-9: Dual RS-232 Cable Installation ................................................................................52
Figure 4-10: Keyboard/mouse Y-cable Connection..................................................................53
Figure 4-11: Audio Kit Cable Connection ..................................................................................54
Figure 4-12: WAFER-945GSE2 PC/104 module installation.....................................................55
Figure 4-13: Dual USB Cable Connection..................................................................................56
Figure 4-14: LAN Connection......................................................................................................57
WAFER-945GSE2 3.5" Motherboard
Figure 4-15: Serial Device Connector.........................................................................................58
Figure 4-16: USB Connector........................................................................................................59
Figure 4-17: VGA Connector .......................................................................................................60
Figure 6-1: Start Up Screen ...................................................................................................... 103
Figure 6-2: Drivers..................................................................................................................... 103
Figure 6-3: Chipset Driver Screen............................................................................................ 104
Figure 6-4: Chipset Driver Welcome Screen........................................................................... 105
Figure 6-5: Chipset Driver License Agreement...................................................................... 106
Figure 6-6: Chipset Driver Read Me File ................................................................................. 106
Figure 6-7: Chipset Driver Setup Operations ......................................................................... 107
Figure 6-8: Chipset Driver Installation Finish Screen............................................................ 108
Figure 6-9: VGA Driver Read Me File....................................................................................... 109
Figure 6-10: VGA Driver Setup Files Extracted...................................................................... 109
Figure 6-11: VGA Driver Welcome Screen.............................................................................. 110
Figure 6-12: VGA Driver License Agreement.......................................................................... 111
Figure 6-13: VGA Driver Read Me File..................................................................................... 111
Figure 6-14: VGA Driver Setup Operations............................................................................. 112
Figure 6-15: VGA Driver Installation Finish Screen............................................................... 113
Figure 6-16: LAN Driver Welcome Screen .............................................................................. 114
Figure 6-17: LAN Driver Installation ........................................................................................ 114
Figure 6-18: LAN Driver Installation Complete....................................................................... 115
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WAFER-945GSE2 3.5" Motherboard
Figure 6-19: Audio Driver Installation File Extraction............................................................ 116
Figure 6-20: Audio Driver Installation Welcome Screen........................................................ 116
Figure 6-21: Audio Driver Installation...................................................................................... 116
Figure 6-22: Audio Driver Installation Complete.................................................................... 117
Figure B-1: IEI One Key Recovery Tool Menu........................................................................ 122
Figure B-2: Launching the Recovery Tool.............................................................................. 126
Figure B-3: Recovery Tool Setup Menu .................................................................................. 127
Figure B-4: Command Mode..................................................................................................... 127
Figure B-5: Partition Creation Commands.............................................................................. 128
Figure B-6: Launching the Recovery Tool.............................................................................. 130
Figure B-7: System Configuration for Windows .................................................................... 130
Figure B-8: Build-up Recovery Partition................................................................................. 131
Figure B-9: Press any key to continue.................................................................................... 131
Figure B-10: Press F3 to Boot into Recovery Mode............................................................... 132
Figure B-11: Recovery Tool Menu ...........................................................................................132
Figure B-12: About Symantec Ghost Window........................................................................ 133
Figure B-13: Symantec Ghost Path .........................................................................................133
Figure B-14: Select a Local Source Drive ............................................................................... 134
Figure B-15: Select a Source Partition from Basic Drive ...................................................... 134
Figure B-16: File Name to Copy Image to ............................................................................... 135
Figure B-17: Compress Image.................................................................................................. 135
Figure B-18: Image Creation Confirmation............................................................................. 136
Figure B-19: Image Creation Process...................................................................................... 136
Figure B-20: Image Creation Complete................................................................................... 136
Figure B-21: Press Any Key to Continue................................................................................ 137
Figure B-22: Partitions for Linux.............................................................................................. 138
Figure B-23: System Configuration for Linux......................................................................... 139
Figure B-24: Access menu.lst in Linux (Text Mode).............................................................. 139
Figure B-25: Recovery Tool Menu ...........................................................................................140
Figure B-26: Recovery Tool Main Menu.................................................................................. 141
Figure B-27: Restore Factory Default...................................................................................... 142
Figure B-28: Recovery Complete Window.............................................................................. 142
Figure B-29: Backup System.................................................................................................... 143
Figure B-30: System Backup Complete Window ................................................................... 143
Figure B-31: Restore Backup................................................................................................... 144
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Figure B-32: Restore System Backup Complete Window..................................................... 144
Figure B-33: Symantec Ghost Window ................................................................................... 145
WAFER-945GSE2 3.5" Motherboard
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WAFER-945GSE2 3.5" Motherboard
List of Tables
Table 1-1: WAFER-945GSE2 Model Variations............................................................................2
Table 1-2: WAFER-945GSE2 Specifications................................................................................9
Table 2-1: Packing List.................................................................................................................13
Table 2-2: Optional Items.............................................................................................................13
Table 3-1: Peripheral Interface Connectors...............................................................................16
Table 3-2: Rear Panel Connectors..............................................................................................17
Table 3-3: ATX Power Connector Pinouts .................................................................................18
Table 3-4: ATX Power Supply Enable Connector Pinouts .......................................................19
Table 3-5: Audio Connector Pinouts (10-pin)............................................................................19
Table 3-6: Panel Backlight Connector Pinouts..........................................................................20
Table 3-7: Battery Connector Pinouts........................................................................................21
Table 3-8: CF Card Socket Pinouts.............................................................................................23
Table 3-9: Digital I/O Connector Pinouts....................................................................................24
Table 3-10: +12V Fan Connector Pinouts...................................................................................25
Table 3-11: Keyboard/Mouse Connector Pinouts .....................................................................26
Table 3-12: LED Connector Pinouts ...........................................................................................26
Table 3-13: LVDS LCD Port Connector Pinouts........................................................................28
Table 3-14: PC/104 Connector Pinouts (1 of 2)..........................................................................29
Table 3-15: PC/104 Connector Pinouts (2 of 2)..........................................................................29
Table 3-16: PC/104 Power Input Connector Pinouts.................................................................30
Table 3-17: Power Button Connector Pinouts...........................................................................31
Table 3-18: Reset Button Connector Pinouts............................................................................31
Table 3-19: SATA Drive Connector Pinouts...............................................................................32
Table 3-20: RS-232/422/485 Serial Port Connector Pinouts.....................................................33
Table 3-21: SPI Flash Connector.................................................................................................34
Table 3-22: USB Port Connector Pinouts...................................................................................35
Table 3-23: LAN Pinouts ..............................................................................................................36
Table 3-24: RJ-45 Ethernet Connector LEDs.............................................................................36
Table 3-25: RS-232 Serial Port (COM 1) Pinouts .......................................................................37
Table 3-26: USB Port Pinouts......................................................................................................38
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Table 3-27: VGA Connector Pinouts...........................................................................................38
Table 4-1: Jumpers.......................................................................................................................43
Table 4-2: AT/ATX Power Select Jumper Settings....................................................................44
Table 4-3: CF Card Setup Jumper Settings ...............................................................................45
Table 4-4: Clear BIOS Jumper Settings......................................................................................46
Table 4-5: COM 2 Function Select Jumper Settings.................................................................46
Table 4-6: LVDS Voltage Selection Jumper Settings................................................................47
Table 5-1: BIOS Navigation Keys................................................................................................63
WAFER-945GSE2 3.5" Motherboard
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WAFER-945GSE2 3.5" Motherboard
BIOS Menus
BIOS Menu 1: Main.......................................................................................................................64
BIOS Menu 2: Advanced..............................................................................................................65
BIOS Menu 3: CPU Configuration...............................................................................................66
BIOS Menu 4: IDE Configuration.................................................................................................67
BIOS Menu 5: IDE Master and IDE Slave Configuration...........................................................69
BIOS Menu 6: Super IO Configuration........................................................................................73
BIOS Menu 7: Hardware Health Configuration..........................................................................75
BIOS Menu 8: Power Configuration............................................................................................78
BIOS Menu 9: ACPI Configuration..............................................................................................79
BIOS Menu 10: Advanced Power Management Configuration ................................................80
BIOS Menu 11: Remote Access Configuration..........................................................................83
BIOS Menu 12: USB Configuration.............................................................................................85
BIOS Menu 13: IEI Feature...........................................................................................................87
BIOS Menu 14: PCI/PnP Configuration.......................................................................................88
BIOS Menu 15: Boot.....................................................................................................................90
BIOS Menu 16: Boot Settings Configuration.............................................................................90
BIOS Menu 17: Boot Device Priority Settings ...........................................................................92
BIOS Menu 18: Security...............................................................................................................93
BIOS Menu 19: Chipset................................................................................................................94
BIOS Menu 20: North Bridge Chipset Configuration................................................................95
BIOS Menu 21: South Bridge Chipset Configuration................................................................98
BIOS Menu 22: Exit.......................................................................................................................99
WAFER-945GSE2
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WAFER-945GSE2 3.5" Motherboard
Chapter
1

1 Introduction

Page 1

1.1 Introduction

Figure 1-1: WAFER-945GSE2
The WAFER-945GSE2 3.5” motherboards are embedded 45 nm Intel® Atom™ processor
WAFER-945GSE2 3.5" Motherboard
platforms. The Intel® Atom™ processor N270 embedded on the WAFER-945GSE2 has a 1.60 GHz clock speed, a 533 MHz FSB and a 512 KB L2 cache. The WAFER-945 GSE2 also includes onboard 1.0 GB DDR2 SDRAM. The board comes with an LVDS connector and supports both 18-bit and 36-bit single channel LVDS screens. The WAFER-945GSE2 also comes with two PCI Express (PCIe) Gigabit Ethernet (GbE) connectors, a CompactFlash® socket on the solder side, connectivity.
and a PC/104 slot for expansion and increased

1.2 Model Variations

The model variations of the WAFER-945GSE2 Series are listed below.
Model No. CPU Operating Temperature
WAFER-945GSE2-N270-R20 WAFER-945GSE2-N270W-R20
Table 1-1: WAFER-945GSE2 Model Variations
Intel® Atom N270 1.6 GHz 0ºC ~ 60ºC Intel® Atom N270 1.6 GHz -20ºC ~ 70ºC
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WAFER-945GSE2 3.5" Motherboard

1.3 Connectors

The connectors on the WAFER-945GSE2 are shown in the figure below.
Figure 1-2: Connectors
Page 3
The WAFER-945GSE2 has the following connectors on-board:
1 x ATX power connector  1 x ATX enable connector  1 x Audio connector  1 x Backlight inverter connector  1 x Battery connector  1 x CompactFlash® socket  1 x Digital input/output (DIO) connector  1 x Fan connector  1 x Keyboard and mouse connector  1 x LED connector  1 x LVDS connector  1 x PC/104 ISA connector  1 x Power button connector
WAFER-945GSE2 3.5" Motherboard
1 x Reset button connector  1 x RS-232/422/485 serial port connector  2 x Serial ATA (SATA) connectors  1 x SPI flash connector  2 x USB 2.0 connectors (supports four USB 2.0 devices)
The WAFER-945GSE2 has the following external peripheral interface connectors on the board rear panel.
2 x Ethernet connectors  1 x RS-232 serial port connector  2 x USB connectors  1 x VGA connector
The WAFER-945GSE2 has the following on-board jumpers:
AT/ATX power mode setting  CF card setting
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Clear CMOS setup  COM2 port mode setting  LVDS1 voltage selection
WAFER-945GSE2 3.5" Motherboard

1.4 Dimensions

1.4.1 Board Dimensions

The dimensions of the board are shown below:
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WAFER-945GSE2 3.5" Motherboard
Figure 1-3: WAFER-945GSE2 Dimensions (mm)

1.4.2 External Interface Panel Dimensions

External peripheral interface connector panel dimensions are shown in Figure 1-4.
Figure 1-4: External Interface Panel Dimensions (mm)
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WAFER-945GSE2 3.5" Motherboard

1.5 Data Flow

6Figure 1-5 shows the data flow between the system chipset, the CPU and other
components installed on the motherboard.
Figure 1-5: Data Flow Diagram
Page 7

1.6 Technical Specifications

The WAFER-945GSE2 technical specifications are listed below.
Specification/Model WAFER-945GSE2
WAFER-945GSE2 3.5" Motherboard
Form Factor System CPU Front Side Bus
(FSB) System Chipset
Memory CompactFlash® Super I/O Display
BIOS Audio
3.5” 45 nm 1.6 GHz Intel® Atom™ N27 0 533 MHz
Northbridge: Intel® 945GSE Southbridge: Intel® ICH7-M
On-board 533 MHz 1.0 GB DDR2 SDRAM One CompactFlash® Type II socket ITE IT8718 Intel® Generation 3.5 integrated GFX core (133 MHz)
18-bit dual channel LVDS integrated in Intel® 945GSE Dual-display supported (VGA and LVDS)
AMI BIOS label Realtek ALC662 HD Audio codec
LAN COM
USB 2.0
SATA Keyboard/mouse Expansion Digital I/O
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Two Realtek RTL8111E GbE controllers with ASF2.0 support One RS-232 serial port
One RS-232/422/485 serial port connector Six USB 2.0 devices supported:
Four by on-board pin-headers Two by external connectors
Two 3.0 Gb/s SATA drives supported One internal pin-header connector One PC/104 ISA slot (ISA DMA Mode not supported) One 8-bit digital input/output connector; 4-bit input/4-bit output through
the ITE IT8718 super I/O
WAFER-945GSE2 3.5" Motherboard
Specification/Model WAFER-945GSE2 Watchdog Timer Power Supply
Power Consumption
Temperature
Humidity (operating) Dimensions (LxW) Weight (GW/NW) Table 1-2: WAFER-945GSE2 Specifications
Software programmable supports 1~2 55 sec. system reset 5 V only
12 V for LCD/system fan AT and ATX support
5V @ 3.1 A (1.6 GHz Intel® Atom™ N270 with on-board 1.0 GB DDR2 SDRAM)
0ºC ~ 60ºC (WAFER-945GSE2-N270-R20)
-20ºC ~ 70ºC (WAFER-945GSE2-N270W-R20) 5% ~ 95% (non-condensing) 146 mm x 102 mm 700 g/230 g
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WAFER-945GSE2 3.5" Motherboard
Chapter
2

2 Packing List

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WAFER-945GSE2 3.5" Motherboard

2.1 Anti-static Precautions

WARNING!
Static electricity can destroy certain electronics. Make sure to follow the ESD precautions to prevent damage to the product, and injury to the user.
Make sure to adhere to the following guidelines:
Wear an anti-static wristband: Wearing an anti-static wristband can prevent
electrostatic discharge.
Self-grounding: Touch a grounded conductor every few minutes to discharge
any excess static buildup.
Use an anti-static pad: When configuring any circuit board, place it on an
anti-static mat.
Only handle the edges of the PCB: Don't touch the surface of the
motherboard. Hold the motherboard by the edges when handling.

2.2 Unpacking Precautions

When the WAFER-945GSE2 is unpacked, please do the following:
Follow the antistatic guidelines above.  Make sure the packing box is facing upwards whe n opening.  Make sure all the packing list items are present.
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2.3 Packing List

NOTE:
If any of the components listed in the checklist below are missing, do not proceed with the installation. Contact the IEI reseller or vendor the WAFER-945GSE2 was purchased from or contact an IEI sales representative directly by sending an email to 32sales@iei.com.tw.
The WAFER-945GSE2 is shipped with the following components:
Quantity Item and Part Number Image
1 WAFER-945GSE2 motherboard
WAFER-945GSE2 3.5" Motherboard
2 SATA cable
(P/N: 32000-062800-RS)
1 KB/MS Cable
(P/N: 32000-023800-RS)
1 Audio cable
(P/N: 32000-072100-RS)
1 Mini jumper pack (2.0mm)
(P/N:33100-000033-RS)
2 Plastic intermediate pole for PC/104 (15mm)
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WAFER-945GSE2 3.5" Motherboard
Quantity Item and Part Number Image
2 Plastic intermediate pole for PC/104 (20mm)
1 One Key Recovery CD
(P/N: IEI-7B000-000478-RS)
1 Utility CD
1 Quick Installation Guide
Table 2-1: Packing List

2.4 Optional Items

The following are optional components which may be separately purchased:
Item and Part Number Image
Dual USB cable (wo bracket) (P/N: 32000-070301-RS)
RS-232/422/485 cable (P/N:32200-026500-RS)
ATX power cable (P/N: 32100-052100-RS)
SATA power cable (P/N: 32100-088600-RS)
Table 2-2: Optional Items
Page 13
WAFER-945GSE2 3.5" Motherboard
Chapter
3

3 Connectors

Page 14
WAFER-945GSE2 3.5" Motherboard

3.1 Peripheral Interface Connectors

This chapter details all the jumpers and connectors.

3.1.1 WAFER-945GSE2 Layout

The figures below show all the connectors and jumpers.
Figure 3-1: Connectors and Jumpers (Front Side)
Figure 3-2: Connectors and Jumpers (Solder Side)
Page 15

3.1.2 Peripheral Interface Connectors

The table below lists all the connectors on the board.
Connector Type Label
ATX enable connector 3-pin wafer ATXCTL1 ATX power connector 4-pin A TX ATXPWR1 Audio connector 10-pin header AUDIO1 Backlight inverter connector 5-pin wafer INVERTER1 Battery connector 2-pin wafer BAT1 CompactFlash® socket 50-pin CF socket CF1 Digital input/output (DIO) connector 10-pin header DIO1 Fan connector 3-pin wafer CPU_FAN1
WAFER-945GSE2 3.5" Motherboard
Keyboard and mouse connector 6-pin wafer KB_MS1 LED connector 6-pin header LED_C1 LVDS connector 30-pin crimp LVDS1
PC/104 connector PC/104 power input connector
Power button connector 2-pin wafer PWRBTN1 Reset button connector 2-pin header RESET1 RS-232/422/485 serial port connector 14-pin header COM2 Serial ATA (SATA) drive connectors 7-pin SATA SATA1, SATA2 SPI flash connector 8-pin header JSPI1 USB 2.0 connectors 8-pin header USB01, USB23
Table 3-1: Peripheral Interface Connectors
104-pin ISA bus CN2 3-pin CN1
Page 16
WAFER-945GSE2 3.5" Motherboard

3.1.3 External Interface Panel Connectors

The table below lists the connectors on the external I/O panel.
Connector Type Label
Ethernet connector RJ-45 LAN1 Ethernet connector RJ-45 LAN2 RS-232 serial port connector Male DB-9 COM1 Dual USB port USB port USB_C45 VGA port connector 15-pin female VGA1
Table 3-2: Rear Panel Connectors

3.2 Internal Peripheral Connectors

The section describes all of the connectors on the WAFER-945GSE2.

3.2.1 ATX Power Connector

CN Label: ATXPWR1 CN Type: CN Location: CN Pinouts:
The ATX power connector connects to an ATX power supply.
4-pin A TX power connector
Figure 3-3
See
Table 3-3
See
Figure 3-3: ATX Power Connector Location
Page 17
Pin Description
1 +12V 2 GND 3 GND 4 +5V
WAFER-945GSE2 3.5" Motherboard
Table 3-3: ATX Power Connector Pinouts

3.2.2 ATX Power Supply Enable Connector

CN Label: ATXCTL1 CN Type: CN Location: CN Pinouts:
3-pin wafer
Figure 3-4
See
Table 3-4
See
The ATX power supply enable connector enables the WAFER-945GSE2 to be connected to an ATX power supply. In default mode, the WAFER-945GSE2 can only use an AT power supply. To enable an ATX power supply, the AT Power Select jumper must also be configured. Please refer to Chapter 4 for more details.
Page 18
Figure 3-4: ATX Power Supply Enable Connector Location
Pin Description
1 +5V Standby
WAFER-945GSE2 3.5" Motherboard
Pin Description
2 GND 3 PS-ON
Table 3-4: ATX Power Supply Enable Connector Pinouts

3.2.3 Audio Connector (10-pin)

CN Label: AUDIO1 CN Type: CN Location: CN Pinouts:
10-pin header
Figure 3-5
See
Table 3-5
See
The 10-pin audio connector is connected to external audio devices including speakers a nd microphones for the input and output of audio signals to and from the system.
Figure 3-5: Audio Connector Pinouts (10-pin)
Pin Description Pin Description
1 Line out R 2 Line in R 3 GND 4 GND 5 Line out L 6 Line in L 7 GND 8 GND 9 MIC in 10 Mic in
Table 3-5: Audio Connector Pinouts (10-pin)
Page 19

3.2.4 Backlight Inverter Connector

CN Label: INVERTER1
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
5-pin wafer
Figure 3-6
See
Table 3-6
See
The backlight inverter connectors provide the backlights on the LCD display connected to the WAFER-945GSE2 with +12V of power.
Page 20
Figure 3-6: Panel Backlight Connector Location
Pin Description
1 LCD Backlight Control 2 GND 3 +12V 4 GND 5 BACKLIGHT Enable
Table 3-6: Panel Backlight Connector Pinouts
WAFER-945GSE2 3.5" Motherboard

3.2.5 Battery Connector

CAUTION:
Risk of explosion if battery is replaced by and incorrect type. Only certified engineers should replace the on-board battery.
Dispose of used batteries according to instructions and local regulations.
CN Label: BAT1 CN Type: CN Location: CN Pinouts:
This is connected to the system battery. The battery provides power to the system clock to retain the time when power is turned off.
Figure 3-7: Battery Connector Location
2-pin wafer
Figure 3-7
See
Table 3-7
See
Pin Description
1 GND 2 Battery+
Table 3-7: Battery Connector Pinouts
Page 21

3.2.6 CompactFlash® Socket

CN Label: CF1
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
50-pin header
Figure 3-8
See
Table 3-8
See
A CF Type I or Type II memory card can be inserted to the CF socket on the WAFER-945GSE2.
Figure 3-8: CF Card Socket Location
Pin Description Pin Description
1 GND 26 CD1# 2 D3 27 D11 3 D4 28 D12 4 D5 29 D13 5 D6 30 D14 6 D7 31 D15 7 CE# 32 CE2# 8 A10 33 VS1# 9 OE# 34 IOR# 10 A9 35 IOW# 11 A8 36 WE# 12 A7 37 IRQ 13 VCC 38 VCC 14 A6 39 CSEL# 15 A5 40 VS2#
Page 22
WAFER-945GSE2 3.5" Motherboard
Pin Description Pin Description
16 A4 41 RESET# 17 A3 42 WAIT# 18 A2 43 INPACK# 19 A1 44 REG# 20 A0 45 BVD2 21 D0 46 BVD1 22 D1 47 D8 23 D2 48 D9 24 IOCS16# 49 D10 25 CD2# 50 GND2
Table 3-8: CF Card Socket Pinouts

3.2.7 Digital Input/Output (DIO) Connector

CN Label: DIO1 CN Type: CN Location: CN Pinouts:
10-pin header See Figure 3-9 See Table 3-9
The digital input/output connector is managed through a Super I/O chip. The DIO connector pins are user programmable.
Figure 3-9: Digital I/O Connector Location
Page 23
Pin Description Pin Description
1 GND 2 VCC 3 Output 3 4 Output 2 5 Output 1 6 Output 0 7 Input 3 8 Input 2 9 Input 1 10 Input 0
Table 3-9: Digital I/O Connector Pinouts

3.2.8 Fan Connector (+12V, 3-pin)

CN Label: CPU_FAN1
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
3-pin wafer See Figure 3-10 See Table 3-10
The cooling fan connector provides a 12V, 500mA current to the cooling fan. The connector has a "rotation" pin to get rotation signals from fans and notify the system so the system BIOS can recognize the fan speed. Please note that only specified fans can issue the rotation signals.
Page 24
Figure 3-10: +12V Fan Connector Location
PIN NO. DESCRIPTION
1 GND
WAFER-945GSE2 3.5" Motherboard
PIN NO. DESCRIPTION
2 +12V 3 Fan Speed Detect
Table 3-10: +12V Fan Connector Pinouts

3.2.9 Keyboard/Mouse Connector

CN Label: KB_MS1 CN Type: CN Location: CN Pinouts:
6-pin wafer
Figure 3-11
See
Table 3-11
See
The keyboard and mouse connector can be connected to a standard PS/2 cable or PS/2 Y-cable to add keyboard and mouse functionality to the system.
Figure 3-11: Keyboard/Mouse Connector Location
Pin Description
1 +5 V KB DATA 2 MS DATA 3 MS CLK 4 KB DATA 5 KB CLK
Page 25
Pin Description
6 GROUND
Table 3-11: Keyboard/Mouse Connector Pinouts

3.2.10 LED Connector

CN Label: LED_C1
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
6-pin wafer
Figure 3-12
See
Table 3-12
See
The LED connector connects to an HDD indicator LED and a power LED on the system chassis to inform the user about HDD activity and the power on/off status of the system.
Figure 3-12: LED Connector Location
Page 26
Pin Description
1 +5V 2 GND 3 Power LED+ 4 Power LED­5 HDD LED+ 6 HDD LED-
Table 3-12: LED Connector Pinouts
WAFER-945GSE2 3.5" Motherboard

3.2.11 LVDS LCD Connector

CN Label: LVDS1 CN Type: CN Location: CN Pinouts:
30-pin crimp
Figure 3-13
See
Table 3-13
See
The 30-pin LVDS LCD connector can be connected to single channel or dual channel, 18-bit or 36-bit LVDS panel.
Figure 3-13: LVDS LCD Connector Pinout Locations
Pin Description Pin Description
1 GND1 2 GND2 3 A_Y0 4 A_Y0# 5 A_Y1 6 A_Y1# 7 A_Y2 8 A_Y2# 9 A_CK 10 A_CK# 11 NC 12 NC 13 GND3 14 GND4 15 B_Y0 16 B_Y0# 17 B_Y1 18 B_Y1# 19 B_Y2 20 B_Y2#
Page 27
Pin Description Pin Description
21 B_CK 22 B_CK# 23 NC 24 NC 25 GND5 26 GND6 27 VCC_LCD 28 VCC_LCD 29 VCC_LCD 30 VCC_LCD
Table 3-13: LVDS LCD Port Connector Pinouts

3.2.12 PC/104 Connector

CN Label: CN2
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
104-pin PC/104 slot
6Figure 3-14
See
Table 3-14 and Table 3-15
See
The PC/104 connector is for attaching a PC/104 expansion card.
Figure 3-14: PC/104 Connector
Pin Description Pin Description Pin Description Pin Description
Page 28
A1 -IOCHK A17 SA14 B1 GND B17 -DACK1 A2 SD7 A18 SA13 B2 RSTDRV B18 DRQ1 A3 SD6 A19 SA12 B3 VCC B19 -REFRESH A4 SD5 A20 SA11 B4 IRQ9 B20 BCLK A5 SD4 A21 SA10 B5 NC B21 IRQ7
WAFER-945GSE2 3.5" Motherboard
Pin Description Pin Description Pin Description Pin Description
A6 SD3 A22 SA9 B6 DRQ2 B22 IRQ6 A7 SD2 A23 SA8 B7 NC B23 IRQ5 A8 SD1 A24 SA7 B8 -NOWS B24 IRQ4 A9 SD0 A25 SA6 B9 +12V B25 IRQ3 A10 IOCHRDY A26 SA5 B10 GND B26 -DACK2 A11 AEN A27 SA4 B11 -SMEMW B27 TC A12 SA19 A28 SA3 B12 -SMEMR B28 BALE A13 SA18 A29 SA2 B13 -IOW B29 VCC A14 SA17 A30 SA1 B14 -IOR B30 ISAOSC A15 SA16 A31 SA0 B15 -DACK3 B31 GND A16 SA15 A32 GND B16 DRQ3 B32 GND
Table 3-14: PC/104 Connector Pinouts (1 of 2)
Pin Description Pin Description Pin Description Pin Description
C1 GND C11 -MEMW D1 GND D11 -DACK5 C2 -SBHE C12 SD8 D2 -MEMCS16 D12 DRQ5 C3 SA23 C13 SD9 D3 -IOCS16 D13 -DACK6 C4 SA22 C14 SD10 D4 IRQ10 D14 DRQ6 C5 SA21 C15 SD11 D5 IRQ11 D15 -DACK7 C6 SA20 C16 SD12 D6 IRQ12 D16 DRQ7 C7 SA19 C17 SD13 D7 IRQ15 D17 VCC C8 SA18 C18 SD14 D8 IRQ14 D18 -MASTER C9 SA17 C19 SD15 D9 -DACK0 D19 GND C10 -MEMR C20 NC D10 DRQ0 D20 GND
Table 3-15: PC/104 Connector Pinouts (2 of 2)

3.2.13 PC/104 Power Input Connector

CN Label: CN1 CN Type: CN Location: CN Pinouts:
3-pin wafer
Figure 3-15
See
Table 3-16
See
Page 29
The PC/104 power input connector provides power to the PC/104 expansion module installed on the PC/104 slot.
Figure 3-15: PC/104 Power Input Connector Pinouts
WAFER-945GSE2 3.5" Motherboard
Pin
1 -5V 2 GND
Description
3 -12V
Table 3-16: PC/104 Power Input Connector Pinouts

3.2.14 Power Button Connector

CN Label: PWRBTN1 CN Type: CN Location: CN Pinouts:
The power button connector is connected to a power switch on the system chassis to enable users to turn the system on and off.
2-pin wafer
Figure 3-16
See
Table 3-17
See
Page 30
Figure 3-16: Power Button Connector Location
WAFER-945GSE2 3.5" Motherboard
Pin Description
1 Power Switch 2 GND
Table 3-17: Power Button Connector Pinouts

3.2.15 Reset Button Connector

CN Label: RESET1 CN Type: CN Location: CN Pinouts:
The reset button connector is connected to a reset switch o n the syst em chassi s to enabl e users to reboot the system when the system is turned on.
Figure 3-17: Reset Button Connector Location
2-pin wafer
Figure 3-17
See
Table 3-18
See
Pin Description
1 Reset Switch 2 GND
Table 3-18: Reset Button Connector Pinouts

3.2.16 SATA Drive Connectors

CN Label: SATA1, SATA2 CN Type:
7-pin SATA drive connector
Page 31
See
CN Location: CN Pinouts:
Figure 3-18 Table 3-19
See
WAFER-945GSE2 3.5" Motherboard
The SATA drive connectors can be connected to SATA drives and support up to 3Gb/s data transfer rate.
Figure 3-18: SATA Drive Connector Locations
Pin Description
1 GND 2 TX+ 3 TX­4 GND 5 RX­6 RX+ 7 GND
Table 3-19: SATA Drive Connector Pinouts

3.2.17 Serial Port Connector, RS-232/422/485

CN Label: COM2
Page 32
CN Type: CN Location: CN Pinouts:
14-pin header See Figure 3-19 See Table 3-20
WAFER-945GSE2 3.5" Motherboard
The 14-pin serial port connector connects to the COM2 serial communications channels. COM2 is a multi function channel. In default mode COM2 is an RS-232 serial communication channel but, with the COM2 function select jumper, can be configured as either an RS-422 or RS-485 serial communications channel.
Figure 3-19: RS-232/422/485 Serial Port Connector Location
Pin Description Pin Description
1 DATA CARRIER DETECT (DCD) 2 DATA SET READY (DSR) 3 RECEIVE DATA (RXD) 4 REQUEST TO SEND (RTS) 5 TRANSMIT DATA (TXD) 6 CLEAR TO SEND (CTS) 7 DATA TERMINAL READY (DTR) 8 RING INDICATOR (RI) 9 GND 10 N/C 11 TXD485+ 12 TXD485# 13 RXD485+ 14 RXD485#
Table 3-20: RS-232/422/485 Serial Port Connector Pinouts

3.2.18 SPI Flash Connector

CN Label: JSPI1 CN Type: CN Location: CN Pinouts:
8-pin header
Figure 3-20
See
Table 3-21
See
Page 33
The 8-pin SPI Flash connector is used to flash the BIOS.
WAFER-945GSE2 3.5" Motherboard
Figure 3-20: SPI Flash Connector
Pin Description Pin Description
1 VCC 2 GND 3 CS# 4 CLOCK 5 SO 6 SI 7 NC 8 NC
Table 3-21: SPI Flash Connector

3.2.19 USB Connectors (Internal)

CN Label: CN Type: CN Location: CN Pinouts:
The 2x4 USB pin connectors each provide connectivity to two USB 1.1 or two USB 2.0
USB01 and USB23 8-pin header See Figure 3-21 See Table 3-22
Page 34
ports. Each USB connector can support two USB devices. Additional external USB ports are found on the rear panel. The USB ports are used for I/O bus expansion.
WAFER-945GSE2 3.5" Motherboard
Figure 3-21: USB Connector Pinout Locations
Pin Description Pin Description
1 VCC 2 GND 3 DATA- 4 DATA+ 5 DATA+ 6 DATA­7 GND 8 VCC
Table 3-22: USB Port Connector Pinouts

3.3 External Peripheral Interface Connector Panel

The figure below shows the external peripheral interface connector (EPIC) panel. The EPIC panel consists of the following:
Figure 3-22: External Peripheral Interface Connector
Page 35

3.3.1 Ethernet Connectors

WAFER-945GSE2 3.5" Motherboard
CN Label: CN Type: CN Location: CN Pinouts:
LAN1 and LAN2
RJ-45 connector See Figure 3-22 See Table 3-23
The WAFER-945GSE2 is equipped with two built-in RJ-45 Ethernet controllers. The controllers can connect to the LAN through two RJ-45 LAN connectors. There are two LEDs on the connector indicating the status of LAN. The pin assignments are listed in the following table:
Pin Description Pin Description
1 MDIA3- 2 MDIA3+ 3 MDIA2- 4 MDIA1­5 MDIA1+ 6 MDIA2+ 7 MDIA0- 8 MDIA0+
Table 3-23: LAN Pinouts
Figure 3-23: RJ-45 Ethernet Connector
The RJ-45 Ethernet connector has two status LEDs, one green and one yello w. The green LED indicates activity on the port and the yellow LED indicates the port is linked. See Table 3-24.
Status Description Status Description
Green Activity Yellow Linked
Table 3-24: RJ-45 Ethernet Connector LEDs
Page 36
WAFER-945GSE2 3.5" Motherboard

3.3.2 Serial Port Connectors (COM1)

CN Label: COM1 CN Type: CN Location: CN Pinouts:
The serial port connects to a RS-232 serial communications device.
Pin Description Pin Description
1 DCD 6 DSR 2 RX 7 RTS 3 TX 8 CTS 4 DTR 9 RI 5 GND
Table 3-25: RS-232 Serial Port (COM 1) Pinouts
DB-9 connector See Figure 3-22 See Table 3-25 and Figure 3-24
Figure 3-24: COM1 Pinout Locations

3.3.3 USB Connectors

CN Label: USB_C45 CN Type: CN Location: CN Pinouts:
The WAFER-945GSE2 has two external USB 2.0 ports. The ports connect to both USB
2.0 and USB 1.1 devices.
Dual USB port See Figure 3-22 See Table 3-26
Page 37
Pin Description Pin Description
1 VCC 5 VCC 2 DATA- 6 DATA­3 DATA+ 7 DATA+ 4 GND 8 GND
Table 3-26: USB Port Pinouts

3.3.4 VGA Connector

CN Label: VGA1
WAFER-945GSE2 3.5" Motherboard
CN Type: CN Location: CN Pinouts:
15-pin Female See Figure 3-22 See Figure 3-25 and Table 3-27
The WAFER-945GSE2 has a single 15-pin female connector for connectivity to standard display devices.
PIN DESCRIPTION PIN DESCRIPTION
1 RED 2 GREEN 3 BLUE 4 NC 5 GND 6 CRT_PLUG­7 GND 8 GND 9 VCC 10 GND 11 NC 12 DDC DAT 13 HSYNC 14 VSYNC 15 DDCCLK
Page 38
Table 3-27: VGA Connector Pinouts
Figure 3-25: VGA Connector
WAFER-945GSE2 3.5" Motherboard
Chapter
4

4 Installation

Page 39

4.1 Anti-static Precautions

WARNING:
Failure to take ESD precautions during the installation of the WAFER-945GSE2 may result in permanent damage to the WAFER-945GSE2 and severe injury to the user.
Electrostatic discharge (ESD) can cause serious damage to electronic components, including the WAFER-945GSE2. Dry climates are especially susceptible to ESD. It is therefore critical that whenever the WAFER-945GSE2 or any other electrical component is handled, the following anti-static precautions are strictly adhered to.
Wear an anti-static wristband: - Wearing a simple anti-static wristband can
WAFER-945GSE2 3.5" Motherboard
help to prevent ESD from damaging the board.
Self-grounding:- Before handling the board touch any grounded conducting
material. During the time the board is handled, frequently touch any conducting materials that are connected to the ground.
Use an anti-static pad: When configuring the WA FER-945GSE2, place it on
an antic-static pad. This reduces the possibility of ESD damaging the WAFER-945GSE2.
Only handle the edges of the PCB:-: When handling the PCB, hold the PCB
by the edges.

4.2 Installation Considerations

NOTE:
The following installation notices and installation considerations should be read and understood before installation. All installation notices must
Page 40
be strictly adhered to. Failing to adhere to these precautions may lead to severe damage and injury to the person performing the installation.
WAFER-945GSE2 3.5" Motherboard
WARNING:
The installation instructions described in this manual should be carefully followed in order to prevent damage to the components and injury to the user.
Before and during the installation please DO the following:
Read the user manual:
o The user ma nual provides a complete description of the
WAFER-945GSE2 installation instructions and configuration options.
Wear an electrostatic discharge cuff (ESD):
o Electro nic components are easily damaged by ESD. Wearing an ESD cuff
removes ESD from the body and helps prevent ESD damage.
Place the WAFER-945GSE2 on an antistatic pad:
o Whe n installing or configuring the motherboard, place it on an antistatic
pad. This helps to prevent potential ESD damage.
Turn all power to the WAFER-945GSE2 off:
o Whe n working with the WAFER-945GSE2, make sure that it is
disconnected from all power supplies and that no electricity is being fed into the system.
Before and during the installation of the WAFER-945GSE2 DO NOT:
Remove any of the stickers on the PCB board. These stickers are required for
warranty validation.
Use the product before verifying all the cables and power connectors are
properly connected.
Allow screws to come in contact with the PCB circuit, connector pins, or its
components.

4.3 CF Card Installation

To install the CF card (Type 1 or Type 2) onto the WAFER-945GSE2, please follow the steps below:
Page 41
Step 1: Locate the CF card socket. Place the WAFER-945GSE2 on an anti-static pad
with the solder side facing up. Locate the CF card.
Step 2: Align the CF card. Make sure the CF card is properly aligned with the CF
socket.
Step 3: Insert the CF card. Gently insert the CF card into the socket making sure the
WAFER-945GSE2 3.5" Motherboard
socket pins are properly inserted into the socket. See
Figure 4-1.
Page 42
Figure 4-1: CF Card Installation
WAFER-945GSE2 3.5" Motherboard

4.4 Jumper Settings

NOTE:
A jumper is a metal bridge used to close an electrical circuit. It consists of two or three metal pins and a small metal clip (often protected by a plastic cover) that slides over the pins to connect them. To CLOSE/SHORT a jumper means connecting the pins of the jumper with the plastic clip and to OPEN a jumper means removing the plastic clip from a jumper.
The hardware jumpers must be set before installation. Jumpers are shown in Table 4-1.
Description Label Type
AT/ATX Power Mode Setting ATXCTL1 3-pin header CF Card Setting JCF1 2-pin header Clear CMOS Setup J_CMOS1 3-pin header COM2 Mode Setting JP1 8-pin header LVDS1 Voltage Select J_VLVDS1 3-pin header
Table 4-1: Jumpers

4.4.1 AT/ATX Power Select Jumper

NOTE:
The AT/ATX Power Select Jumper is the same as the ATX Enable connector.
Page 43
Jumper Label: ATXCTL1
WAFER-945GSE2 3.5" Motherboard
Jumper Type: Jumper Settings: Jumper Location:
The AT/ATX Power Select jumper specifies the systems power mode as AT or ATX.
Setting Description
Short 2-3 Use AT power (Default) OFF Use ATX power
Table 4-2: AT/ATX Power Select Jumper Settings
3-pin header See Table 4-2 See Figure 4-2
Figure 4-2: AT/ATX Power Select Jumper Location

4.4.2 CF Card Setup

Jumper Label: JCF1 Jumper Type: Jumper Settings: Jumper Location:
The CF Card Setup jumper sets the CF Type I card or CF Type II cards as either the slave device or the master device.
Page 44
2-pin header
Table 4-3
See
Figure 4-3
See
WAFER-945GSE2 3.5" Motherboard
Setting Description
OFF Slave (Default) Short 1-2 Master
Table 4-3: CF Card Setup Jumper Settings
Figure 4-3: CF Card Setup Jumper Location

4.4.3 Clear CMOS Jumper

Jumper Label: J_CMOS1 Jumper Type: Jumper Settings: Jumper Location:
3-pin header See Table 4-4 See Figure 4-4
If the WAFER-945GSE2 fails to boot due to improper BIOS settings, the clear CMOS jumper clears the CMOS data and resets the system BIOS information. To do this, use the jumper cap to close pins 2 and 3 for a few seconds then reinstall the jumper clip back to pins 1 and 2.
If the “CMOS Settings Wrong” message is displayed during the boot up process, the fault may be corrected by pressing the F1 to enter the CMOS Setup menu. Do one of the following:
Enter the correct CMOS setting  Load Optimal Defaults  Load Failsafe Defaults.
After having done one of the above, save the changes and exit the CMOS Setup menu.
Page 45
Setting Description
Short 1-2 Keep CMOS Setup (Default) Short 2-3 Clear CMOS Setup
WAFER-945GSE2 3.5" Motherboard
Table 4-4: Clear BIOS Jumper Settings
Figure 4-4: Clear BIOS Jumper Location

4.4.4 COM 2 Function Select Jumper

Jumper Label: JP1 Jumper Type: Jumper Settings: Jumper Location:
8-pin header
Table 4-5
See
Figure 4-5
See
Page 46
The COM 2 Function Select jumper sets the communication protocol used by the second serial communications port (COM 2) as RS-232, RS-422 or RS-485.
Setting Description
Short 1-2 RS-232 (Default) Short 3-4 RS-422 Short 5-6 RS-485 Short 5-6
RS-485 with RTS control
Short 7-8
Table 4-5: COM 2 Function Select Jumper Settings
WAFER-945GSE2 3.5" Motherboard
Figure 4-5: COM 2 Function Select Jumper Location

4.4.5 LVDS Voltage Selection

WARNING:
Permanent damage to the screen and WAFER-945GSE2 may occur if the wrong voltage is selected with this jumper. Please refer to the user guide that came with the monitor to select the correct voltage.
Jumper Label: J_VLVDS1 Jumper Type: Jumper Settings: Jumper Location:
The LVDS Voltage Selection jumpers allow the LVDS screen voltages to be set.
Setting Description
Short 1-2 +3.3V LVDS (Default) Short 2-3 +5V LVDS
3-pin header
Table 4-6
See
Figure 4-6
See
Table 4-6: LVDS Voltage Selection Jumper Settings
Page 47
Figure 4-6: LVDS Voltage Selection Jumper Pinout Locations

4.5 Chassis Installation

4.5.1 Airflow

WAFER-945GSE2 3.5" Motherboard
WARNING:
Airflow is critical to the cooling of the CPU and other onboard components. The chassis in which the WAFER-945GSE2 must have air vents to allow cool air to move into the system and hot air to move out.
The WAFER-945GSE2 must be installed in a chassis with ventilation holes on the sides allowing airflow to travel through the heat sink surface. In a system with an individual power supply unit, the cooling fan of a power supply can also help generate airflow through the board surface.
Page 48
WAFER-945GSE2 3.5" Motherboard
NOTE:
IEI has a wide range of backplanes available. Please contact your WAFER-945GSE2 vendor, reseller or an IEI sales representative at
2sales@iei.com.tw or visit the IEI website (2http://www.ieiworld.com.tw)
to find out more about the available chassis.

4.5.2 Motherboard Installation

To install the WAFER-945GSE2 motherboard into the chassis please refer to the reference material that came with the chassis.

4.6 Internal Peripheral Device Connections

This section outlines the installation of peripheral devices to the onboard connectors.

4.6.1 SATA Drive Connection

The WAFER-945GSE2 is shipped with two SATA drive cables . To connect the SATA drives to the connectors, please follow the steps below.
Step 1: Locate the connectors. The locations of the SATA drive connectors are shown
in Chapter 3.
Step 2: Insert the cable connector. Insert the cable co nnector into the on-board SATA
drive connector until it clips into place. See
Figure 4-7.
Page 49
Figure 4-7: SATA Drive Cable Connection
WAFER-945GSE2 3.5" Motherboard
Step 3: Connect the cable to the SATA disk. Connect the connector on the other end
of the cable to the connector at the back of the SATA drive. See
Step 4: Connect the SATA power cable (optional). Connect the SATA power
connector to the back of the SATA drive. See
Figure 4-8.
Figure 4-8.
Page 50
WAFER-945GSE2 3.5" Motherboard
Figure 4-8: SATA Power Cable Connection
The SATA power cable can be bought from IEI. See
Optional Items in Section 2.4.

4.6.2 Dual RS-232 Cable Connection (w/o bracket) (Optional)

The dual RS-232 cable consists of two connectors attached to two independent cables. Each cable is then attached to a D-sub 9-pin male connector. To install the dual RS-232 cable, please follow the steps below.
Step 1: Locate the connectors. The locations of the RS-232 connectors are shown in
Chapter 3.
Step 2: Insert the cable connectors. Insert one con nector into each serial port box
headers. See connector can only be installed in one direction.
Figure 4-9. A key on the front of the cable connectors ensures the
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WAFER-945GSE2 3.5" Motherboard
Figure 4-9: Dual RS-232 Cable Installation
Step 3: Secure the connectors. Both single RS-232 connectors have two retention
screws that must be secured to a chassis or bracket.
Step 4: Connect the serial device. Once the single RS-232 connectors are connected
to a chassis or bracket, a serial communications device can be connecte d to the system.

4.6.3 Keyboard/Mouse Y-cable Connector

The WAFER-945GSE2 is shipped with a keyboard/mouse Y-cable connector. The keyboard/mouse Y-cable connector connects to a keyboard/mouse connector on the WAFER-945GSE2 and branches into two cables that are each connected to a PS/2 connector, one for a mouse and one for a keyboard. To connect the keyboard/mouse Y-cable connector, please follow the steps below.
Step 1: Locate the connector. The location of the keyboard/mouse Y-cable connector
is shown in Chapter 3.
Step 2: Align the connectors. Correctly align pin 1 on the cable conne ctor with pin 1 on
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the WAFER-945GSE2 keyboard/mouse connector. See
Step 3: Insert the cable connectors. On ce the ca ble connector i s p rope rly aligned wit h
Figure 4-10.
WAFER-945GSE2 3.5" Motherboard
the keyboard/mouse connector on the WAFER-945GSE2, connect the cable connector to the on-board connectors. See
Figure 4-10.
Figure 4-10: Keyboard/mouse Y-cable Connection
Step 4: Attach PS/2 connectors to the chassis. The keyboard/mouse Y-cable
connector is connected to two PS/2 connectors. To secure the PS/2 connectors to the chassis please refer to the installation instructions that came with the chassis.
Step 5: Connect the keyboard and mouse. Once the PS/2 connectors are connected
to the chassis, a keyboard and mouse can each be connected to one of the PS/2 connectors. The keyboard PS/2 connector and mouse PS/2 connector are both marked. Please make sure the keyboard and mouse are connected to the correct PS/2 connector.
Page 53

4.6.4 Audio Kit Installation

The Audio Kit that came with the WAFER-945GSE2 connects to the 10-pin audio connector on the WAFER-945GSE2. The audio kit consists of three audio jacks. One audio jack, Mic In, connects to a microphone. The remaining two audio jacks, Line-In and Line-Out, connect to two speakers. To install the audio kit, please refer to the steps belo w:
Step 1: Locate the audio connector. The location of the 10-pin audio connector is
shown in Chapter 3.
Step 2: Align pin 1. Align pin 1 on the on-board connector with pin 1 on the audio kit
connector. Pin 1 on the audio kit connector is indicated with a white dot. See
Figure 4-11.
WAFER-945GSE2 3.5" Motherboard
Figure 4-11: Audio Kit Cable Connection
Step 3: Connect the audio devices. Connect one sp eaker to the line-in audio jack, one
speaker to the line-out audio jack and a microphone to the mic-in audio jack.

4.6.5 PC/104 Module Installation

The WAFER-945GSE2 has a standard PC/104 connector. To install a PC/104 module, please refer to and follow the installation instructions and diagram below:
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WAFER-945GSE2 3.5" Motherboard
Figure 4-12: WAFER-945GSE2 PC/104 module installation
Step 4: Remove retention nuts. Remove the two nuts securing the heatsi nk and two
nuts securing the WAFER-945GSE2 to the chassis.
Step 5: Attach inter mediate poles. Insert the two short plastic intermediate poles into
the bolts securing the heatsink. Insert the two tall plastic intermediate poles.
Step 6: Align the PC/104 connector. Align the PC/104 module connector with the
corresponding connector on the WAFER-945GSE2 (conne ctor CN2). Gently push the module down to ensure the connectors are properly connected.
Step 7: Replace the retention nuts. Screw the four retention nuts onto the
intermediate poles to secure the PC/104 module.

4.6.6 USB Cable (Dual Port without Bracket) (Optional)

The WAFER-945GSE2 is shipped with a dual port USB 2.0 cable. To connect the USB cable connector, please follow the steps below.
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Step 1: Locate the connectors. The locations of the USB connectors are shown in
Chapter 3.
WAFER-945GSE2 3.5" Motherboard
WARNING:
If the USB pins are not properly aligned, the USB device can burn out.
Step 2: Align the connectors. Th e cable has two connectors. Correctly align pin 1on
each cable connector with pin 1 on the WAFER-945GSE2 USB connector.
Step 3: Insert the cable connectors. Once the cable connectors are properly aligned
with the USB connectors on the WAFER-945GSE2, connect the cable connectors to the on-board connectors. See
Figure 4-13.
Figure 4-13: Dual USB Cable Connection
Step 4: Attach the USB connectors to the chassis. The USB 2.0 connectors each of
two retention screw holes. To secure the connectors to the chassis please refer to the installation instructions that came with the chassis.

4.7 External Peripheral Interface Connection

This section describes connecting devices to the external connectors on the WAFER-945GSE2.
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WAFER-945GSE2 3.5" Motherboard

4.7.1 LAN Connection

There are two external RJ-45 LAN connectors. The RJ-45 connectors enable connection to an external network. To connect a LAN cable with an RJ-45 connector, please follow the instructions below.
Step 1: Locate the RJ-45 connectors. The locations of the RJ-45 connectors are
shown in Chapter 3.
Step 2: Align the connectors. Align the RJ-45 connector on the LAN cable with one of
the RJ-45 connectors on the WAFER-945GSE2. See
Figure 4-14: LAN Connection
Figure 4-14.
Step 3: Insert the LAN cable RJ-45 connector. Once aligned, gently insert the LAN
cable RJ-45 connector into the on-board RJ-45 connector.

4.7.2 Serial Device Connection

The WAFER-945GSE2 has a single female DB-9 connector on the external peripheral interface panel for a serial device. Follow the steps below to connect a serial device to the WAFER-945GSE2.
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Step 1: Locate the DB-9 connector. The location of the DB-9 connector is shown in
Chapter 3.
Step 2: Insert the serial connector. Insert the DB-9 connector of a serial device into
WAFER-945GSE2 3.5" Motherboard
the DB-9 connector on the external peripheral interface. See
Figure 4-15.
Figure 4-15: Serial Device Connector
Step 3: Secure the connector. Secure the serial device connector to the external
interface by tightening the two retention screws on either side of the connector.

4.7.3 USB Connection (Dual Connector)

The external USB receptacle connectors provide easier and quicker access to external USB devices. Follow the steps below to connect USB devices to the WAFER-945GSE2.
Step 1: Locate the USB receptacle connectors. The location of the USB recept acle
connectors are shown in Chapter 3.
Step 2: Insert a USB plug. Insert the USB plug of a device into the USB receptacle on
the external peripheral interface. See
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Figure 4-16.
WAFER-945GSE2 3.5" Motherboard
Figure 4-16: USB Connector

4.7.4 VGA Monitor Connection

The WAFER-945GSE2 has a single female DB-15 connector on the external peripheral interface panel. The DB-15 connector is connected to a CRT or VGA monitor. To connect a monitor to the WAFER-945GSE2, please follow the instructions below.
Step 1: Locate the female DB-15 connector. The location of the female DB-15
connector is shown in Chapter 3.
Step 2: Align the VGA connector. Align the male DB-15 connector on the VGA screen
cable with the female DB-15 connector on the external peripheral interface.
Step 3: Insert the VGA connector. Once the connectors are properly aligned with the
insert the male connector from the VGA screen into the female connector on the WAFER-945GSE2. See
Figure 4-17.
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Figure 4-17: VGA Connector
WAFER-945GSE2 3.5" Motherboard
Step 4: Secure the connector. Secure the DB-15 VGA connector from the VGA
monitor to the external interface by tightening the two retention screws on either side of the connector.
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WAFER-945GSE2 3.5" Motherboard
Chapter
5

5 BIOS

Page 61

5.1 Introduction

The BIOS is programmed onto the BIOS chip. The BIOS setup program allows changes to certain system settings. This chapter outlines the options that can be changed.

5.1.1 Starting Setup

The AMI BIOS is activated when the computer is turned on. The setup program can be activated in one of two ways.
WAFER-945GSE2 3.5" Motherboard
1. Press the
2. Press the D appears on the screen. 0.
If the message disappears before the D again.
DELETE key as soon as the system is turned on or
ELETE key when the “Press DEL to enter SETUP” message
ELETE key is pressed, restart the computer and try

5.1.2 Using Setup

Use the arrow keys to highlight items, press ENTER to select, use the PageUp and PageDown keys to change entries, press F1 for help and press E keys are shown in
Key Function
Up arrow Move to previous item Down arrow Move to next item Left arrow Move to the item on the left hand side
Table 5-1.
SC to quit. Navigation
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Right arrow Move to the item on the right hand side Esc key Main Menu – Quit and not save chan ges into CMOS
Status Page Setup Menu and Option Page Setup Menu --
Exit current page and return to Main Menu Page Up key Increase the numeric value or make changes Page Dn key Decrease the numeric value or make changes F1 key General help, only for Status Page Setup Menu and Option
Page Setup Menu
WAFER-945GSE2 3.5" Motherboard
Key Function
F2/F3 key Change color from total 3 colors. F2 to select color forward F10 Save all the CMOS changes, only for Main Menu
Table 5-1: BIOS Navigation Keys

5.1.3 Getting Help

When F1 is pressed a small help window describing the appropriate keys to use and the possible selections for the highlighted item appears. To exit the Help Window press E the F1 key again.

5.1.4 Unable to Reboot after Configuration Changes

If the computer cannot boot after changes to the system configuration is made, CMOS defaults. Use the jumper described in Chapter 4.

5.1.5 BIOS Menu Bar

The menu bar on top of the BIOS screen has the following main items:
Main – Changes the basic system configuration.  Advanced – Changes the advanced system settings.  PCIPnP – Changes the advanced PCI/PnP settings  Boot – Changes the system boot configuration.  Security – Sets User and Supervisor Passwords.  Chipset – Changes the chipset settings.
SC or
Exit – Selects exit options and loads default settings
The following sections completely describe the configuration options found in the menu items at the top of the BIOS screen and listed above.
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WAFER-945GSE2 3.5" Motherboard

5.2 Main

The Main BIOS menu (BIOS Menu 1) appears when the BIOS Setup program is entered. The Main menu gives an overview of the basic system information.
BIOS SETUP UTILITY
Main Advanced PCIPnP Boot Security Chipset Exit
System Overview
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
AMIBIOS Version :08.00.15 Build Date :10/12/11 ID: :B220MR01
Processor Genuine Intel(R) CPU N270 @ 1.60GHz Speed :1600MHz Count :1
System Memory Size :1016MB
System Time [14:20:27] System Date [Tue 10/25/2011]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
Use [ENTER], [TAB] or [SHIFT-TAB] to select a field.
Use [+] or [-] to configure system time.

Select Screen
Select Item + - Change Field Tab Select Field F1 General Help F10 Save and Exit ESC Exit
BIOS Menu 1: Main
System Overview
The System Overvie w lists a brief summary of different system components. Th e fields in System Overview cannot be changed. The items shown in the system overview include:
AMI BIOS: Displays auto-detected BIOS information
o Versi on: Current BIOS version o Build Date: Date the current BIOS version was made o ID: Installed BIOS ID
Processor: Displays auto-detected CPU specifications
o Type: Names the currently installed processor o Speed: Lists the processor speed o Cou nt: The number of CPUs on the motherboard
System Memory: Displays the auto-detected system memory.
o Si ze: Lists memory size
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WAFER-945GSE2 3.5" Motherboard
The System Overview field also has two user configurable fields:
System Time [xx:xx:xx]
Use the System Time option to set the system time. Manually enter the hours, minutes and seconds.
System Date [xx/xx/xx]
Use the System Date option to set the system date. Manually enter the day, month and year.

5.3 Advanced

Use the Advanced menu (BIOS Menu 2) to configure the CPU and peripheral devices through the following sub-menus:
BIOS SETUP UTILITY
Main Advanced PCIPnP Boot Security Chipset Exit
Advanced Settings
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
WARNING: Setting wrong values in below sections may cause system to malfunction.
> CPU Configuration
> IDE Configuration > SuperIO Configuration > Hardware Health Configuration > Power Configuration > Remote Access Configuration > USB Configuration > iEi Feature
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 2: Advanced
Configure CPU

Select Screen
Select Item Enter Go to Sub Screen F1 General Help F10 Save and Exit ESC Exit
WARNING:
Setting the wrong values in the sections below may cause the system to malfunction. Make sure that the settings made are compatible with the hardware.
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WAFER-945GSE2 3.5" Motherboard

5.3.1 CPU Configuration

Use the CPU Configuration menu (BIOS Menu 3) to view detailed CPU specifications and configure the CPU.
BIOS SETUP UTILITY
Advanced
Configure advanced CPU Settings Module Version:3F.10
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
Manufacturer :Intel Intel(R) Atom(TM) CPU N270 @ 1.60GHz Frequency :1.60GHz FSB Speed :532Hz
Cache L1 :24 KB Cache L2 :512 KB
Ratio Actual Value:12
Hyper Threading Technology [Enabled]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
Options
Disabled Enabled

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
BIOS Menu 3: CPU Configuration
The CPU Configuration menu (BIOS Menu 3) lists the following CPU details:
Manufacturer: Lists the name of the CPU manufacturer  Brand String: Lists the brand name of the CPU being used  Frequency: Lists the CPU processing speed  FSB Speed: Lists the FSB speed  Cache L1: Lists the CPU L1 cache size  Cache L2: Lists the CPU L2 cache size  Ratio Actual Value: Lists the ratio of the frequency to the clo ck speed
Hyper-Threa ding Technology [Enabled]
Use the Hyper Threading Technology BIOS option to enable or disable the Intel Hyper-Threading Technology.
Disabled
Disables the Intel Hyper-Threading Technology .
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Enabled DEFAULT
Enables the Intel Hyper-Threading Technology .
WAFER-945GSE2 3.5" Motherboard

5.3.2 IDE Configuration

Use the IDE Configuration menu (BIOS Menu 4) to change and/or set the configuration of the IDE devices installed in the system.
BIOS SETUP UTILITY
Advanced
IDE Configuration
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
ATA/IDE Configuration [Compatible]
Legacy IDE Channels [SATA Pri, PATA Sec]
> Primary IDE Master : [Not Detected] > Primary IDE Slave : [Not Detected] > Secondary IDE Master : [Not Detected] > Secondary IDE Slave : [Not Detected]
Options
Disabled Compatible Enhanced

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 4: IDE Configuration
ATA/IDE Configuration [Compatible]
Use the ATA/IDE Configuration option to configure the ATA/IDE controller.
Disabled
Compatible D
Enhanced
Disables the on-board ATA/IDE controller.
EFAULT
Configures the on-board ATA/IDE controller to be in
Configures the on-board ATA/IDE controller to be in compatible mode. In this mode, a SATA channel will replace one of the IDE channels. This mode supports up to 4 storage devices.
Enhanced mode. In this mode, IDE channels and SATA channels are separated. This mode supports up to 6 storage devices. Some legacy OS do not support this mode.
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Legacy IDE Channels [SATA Pri, PATA Sec]
WAFER-945GSE2 3.5" Motherboard
SA TA Only
SA TA Pri, PATA Sec D
Only the SATA drives are enabled.
EFAULT
The SATA drives are enabled on the Primary IDE channel. The IDE drives are enabled on the Secondary IDE channel.
PATA Only
The IDE drives are enabled on the primary
and secondary IDE channels. SATA drives are disabled.
IDE Master and IDE Slave
When entering setup, BIOS auto detects the presence of IDE devices. BIOS displays the status of the auto detected IDE devices. The following IDE devices are detected and are shown in the IDE Configuration menu:
 Primary IDE Master  Primary IDE Slave  Secondary IDE Master  Secondary IDE Slave
The IDE Configuration menu (
7BIOS Menu 4) allows changes to the configurations for the
IDE devices installed in the system. If an IDE device is detected, and one of the above listed four BIOS configuration options is selected, the IDE configuration options shown in
Section
75.3.2.1 appear.
5.3.2.1 IDE Master, IDE Slave
Use the IDE Master and IDE Slave configuration menu to view both primary and secondary IDE device details and configure the IDE devices connected to the system.
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WAFER-945GSE2 3.5" Motherboard
BIOS SETUP UTILITY
Advanced
Primary IDE Master
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
Device :Not Detected
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
Type [Auto]
LBA/Large Mode [Auto] Block (Multi-Sector Transfer) [Auto] PIO Mode [Auto] DMA Mode [Auto] S.M.A.R.T. [Auto] 32Bit Data Transfer [Enabled]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 5: IDE Master and IDE Slave Configuration
Auto-Detected Drive Parameters
Select the type of device connected to the system.

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
The “grayed-out” items in the left frame are IDE disk drive parameters automatically detected from the firmware of the selected IDE disk drive. The drive parameters are listed as follows:
Device: Lists the device type (e.g. hard disk, CD-ROM etc.)  Type: Indicates the type of devices a user can manually select  Vendor: Lists the device manufacturer  Size: List the storage capacity of the device.  LBA Mode: Indicates whether the LBA (Logical Block Addressing) is a
method of addressing data on a disk drive is supported or not.
Block Mode: Block mode boosts IDE drive performance by increasing the
amount of data transferred. Only 512 bytes of data can be transferred per interrupt if block mode is not used. Block mode allows transfers of up to 64 KB per interrupt.
PIO Mode: Indicates the PIO mode of the installed device.  Async DMA: Indicates the highest Asynchronous DMA Mode that is
supported.
Ultra DMA: Indicates the highest Synchronous DMA Mode that is supported.  S.M.A.R.T.: Indicates whether or not the Self-Monitoring Analysis and
Reporting Technology protocol is supported.
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Type [Auto]
Use the Type BIOS option select the type of device the AMIBIOS attempts to boot from after the Power-On Self-Test (POST) is complete.
WAFER-945GSE2 3.5" Motherboard
32Bit Data Transfer: Enables 32-bit data transfer.
Not Installed
Auto DEFAULT
CD/DVD
ARMD
BIOS is prevented from searching for an IDE disk
drive on the specified channel. The BIOS auto detects the IDE disk drive type
attached to the specified channel. This setting should be used if an IDE hard disk drive is attached to the specified channel.
The CD/DVD option specifies that an IDE CD-ROM
drive is attached to the specified IDE channel. The BIOS does not attempt to search for other types of IDE disk drives on the specified channel.
This option specifies an ATAPI Removable Media
Device. These include, but are not limited to: ZIP LS-120
LBA/Large Mode [Auto]
Use the LBA/Large Mode option to disable or enable BIOS to auto detects LBA (Logical Block Addressing). LBA is a method of addressing data on a disk drive. In LBA mode, the maximum drive capacity is 137 GB.
Disabled
Auto DEFAULT
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BIOS is prevented from using the LBA mode control on
the specified channel. BIOS auto detects the LBA mode control on the specified
channel.
WAFER-945GSE2 3.5" Motherboard
Block (Multi Sector Transfer) [Auto]
Use the Block (Multi Sector Transfer) to disable or enable BIOS to auto detect if the device supports multi-sector transfers.
Disabled
Auto DEFAULT
PIO Mode [Auto]
Use the PIO Mode option to select the IDE PIO (Programmable I/O) mode program timing cycles between the IDE drive and the programmable IDE controller. As the PIO mode increases, the cycle time decrease s.
Auto DEFAULT
0
BIOS is prevented from using Multi-Sector Transfer on the
specified channel. The data to and from the device occurs one sector at a time.
BIOS auto detects Multi-Sector Transfer support on the drive on the specified channel. If supported the data transfer to and from the device occurs multiple sectors at a time.
BIOS auto detects the PIO mode. Use this value if the IDE disk drive support cannot be determined.
PIO mode 0 selected with a maximum transfer rate of 3.3MBps
1
2
3
4
DMA Mode [Auto]
Use the DMA Mode BIOS selection to adjust the DMA mode options.
Auto DEFAULT
PIO mode 1 selected with a maximum transfer rate of 5.2MBps PIO mode 2 selected with a maximum transfer rate of 8.3MBps PIO mode 3 selected with a maximum transfer rate of 11.1MBps PIO mode 4 selected with a maximum transfer rate of 16.6MBps
(This setting generally works with all hard disk drives manufactured after 1999. For other disk drives, such as IDE CD-ROM drives, check the specifications of the drive.)
BIOS auto detects the DMA mode. Use this value if the IDE disk drive support cannot be determined.
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WAFER-945GSE2 3.5" Motherboard
SWDMA0
SWDMA1
SWDMA2
MWDMA0
MWDMA1
MWDMA2
UDMA1
Single Word DMA mode 0 selected with a maximum data
transfer rate of 2.1MBps
Single Word DMA mode 1 selected with a maximum data
transfer rate of 4.2MBps
Single Word DMA mode 2 selected with a maximum data
transfer rate of 8.3MBps
Multi Word DMA mode 0 selected with a maximum data
transfer rate of 4.2MBps
Multi Word DMA mode 1 selected with a maximum data
transfer rate of 13.3MBps
Multi Word DMA mode 2 selected with a maximum data
transfer rate of 16.6MBps
Ultra DMA mode 0 selected with a maximum data transfer
rate of 16.6MBps
UDMA1
UDMA2
UDMA3
UDMA4
UDMA5
Ultra DMA mode 1 selected with a maximum data transfer
rate of 25MBps
Ultra DMA mode 2 selected with a maximum data transfer
rate of 33.3MBps
Ultra DMA mode 3 selected with a maximum data transfer
rate of 44MBps (To use this mode, it is required that an 80-conductor ATA cable is used.)
Ultra DMA mode 4 selected with a maximum data transfer
rate of 66.6MBps (To use this mode, it is required that an 80-conductor ATA cable is used.)
Ultra DMA mode 5 selected with a maximum data transfer
rate of 99.9MBps (To use this mode, it is required that an 80-conductor ATA cable is used.)
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WAFER-945GSE2 3.5" Motherboard
S.M.A.R.T [Auto]
Use the S.M.A.R.T option to auto-detect, disable or enable Self-Monitoring Analysis and Reporting Technology (SMART) on the drive on the specified channel. S.M.A.R.T predicts impending drive failures. The S.M.A.R.T BIOS option enables or disables this function.
Auto DEFAULT
Disabled
Enabled
32Bit Data Transfer [Enabled]
Use the 32Bit Data Transfer BIOS option to enables or disable 32-bit data transfers.
Disabled
Enabled DEFAULT
Prevents BIOS from using the HDD SMART feature. Allows BIOS to use the HDD SMART feature
Prevents the BIOS from using 32-bit data transfers.
BIOS auto detects HDD SMART support.
Allows BIOS to use 32-bit data transfers on supported hard disk drives.

5.3.3 Super IO Configuration

Use the Super IO Configuration menu (BIOS Menu 6) to set or change the configurations for the serial ports.
BIOS SETUP UTILITY
Advanced
Configure ITE8718 Super IO Chipset
⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯
Serial Port1 Address [3F8/IRQ4]
Serial Port2 Address [2F8/IRQ3]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 6: Super IO Configuration
Allows BIOS to select Serial Port1 Base Addresses

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
Page 73
Serial Port1 Address [3F8/IRQ4]
Use the Serial Port1 Address option to select the Serial Port 1 base address.
WAFER-945GSE2 3.5" Motherboard
Disabled
3F8/IRQ4 DEFAULT
3E8/IRQ4
2E8/IRQ3
Serial Port2 Address [2F8/IRQ3]
Use the Serial Port2 Address option to select the Serial Port 2 base address.
Disabled
2F8/IRQ3 DEFAULT
3E8/IRQ4
No base address is assigned to Serial Port 1
Serial Port 1 I/O port address is 3F8 and the interrupt address is IRQ4
Serial Port 1 I/O port address is 3E8 and the interrupt
address is IRQ4
Serial Port 1 I/O port address is 2E8 and the interrupt
address is IRQ3
No base address is assigned to Serial Port 2
Serial Port 2 I/O port address is 3F8 and the interrupt address is IRQ3
Serial Port 2 I/O port address is 3E8 and the interrupt
address is IRQ4
2E8/IRQ3
Serial Port 2 I/O port address is 2E8 and the interrupt
address is IRQ3

5.3.4 Hardware Health Configuration

The Hardware Health Configuration menu (BIOS Menu 7) shows the operating temperature, fan speed and system voltages.
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WAFER-945GSE2 3.5" Motherboard
BIOS SETUP UTILITY
Advanced
Hardware Health Configuration
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CPU FAN Mode Setting [Full On mode]
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CPU Temperature :43ºC/109ºF System Temperature :33ºC/91ºF
CPU Fan Speed :N/A
CPU Core :1.136 V +1.05V :1.040 V +3.30V :3.296 V +5.00V :4.972 V +12.0V :12.288 V +1.5V :1.477 V +1.8V :1.792 V 5VSB :5.053 V VBAT :3.184 V
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
Fan configuration mode setting

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
BIOS Menu 7: Hardware Health Configuration
CPU FAN Mode Setting [Full On mode]
Use the CPU FAN Mode Setting option to configure the second fan.
Full On mode D
Automatic mode
PWM Manually mode
When the CPU FAN Mode Setting option is in the Automatic mode, the following parameters can be set.
CPU Temperature Limit of Off  CPU Temperature Limit of On
EFAULT
Fan is off when the temperature is low
Pulse width modulation set manually
Fan is on all the time
enough. Parameters must be set by the user.
CPU Fan Start PWM  Slope PWM
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When the CPU FAN Mode Setting option is in the PWM Manually mode, the following parameters can be set.
CPU Fan PWM Control
CPU Temperature Limit of Off [000]
WARNING:
Setting this value too high may cause the fan to stop when the CPU is at a high temperature and therefore cause the system to be damaged.
The CPU Temperature Limit of Off option can only be set if the CPU FAN Mode Setting option is set to Automatic mode. Use the CPU Temperature Limit of Off option to select
WAFER-945GSE2 3.5" Motherboard
the CPU temperature at which the cooling fan should automatically turn off. To select a value, select the CPU Temperature Limit of Off option and enter a decimal number between 000 and 127. The temperature range is specified below.
Minimum Value: 0°C  Maximum Value: 127°C
CPU Temperature Limit of On [020]
WARNING:
Setting this value too high may cause the fan to start only when the CPU is at a high temperature and therefore cause the system to be damaged.
The CPU Temperature Limit of On option can only be set if the CPU FAN Mode Settin g
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option is set to Automatic mode. Use the CPU Temperature Limit of On option to select the CPU temperature at which the cooling fan should automatically turn on. When the fan starts, it rotates using the starting pulse width modulation (PWM) specified in the CPU Fan
Start PWM option below. To select a value, select the CPU Temperature Limit of On
WAFER-945GSE2 3.5" Motherboard
option and enter a decimal number between 000 and 127. The temperature range is specified below.
Minimum Value: 0°C  Maximum Value: 127°C
CPU Fan Start PWM [070]
The CPU Fan Start PWM option can only be set if the CPU FAN Mode Setting option is set to Automatic mode. Use the CPU Fan Start PWM option to select the PWM mode the fan starts to rotate with after the temperature specified in the CPU Temperature Limit of On is exceeded. The Super I/O chipset supports 128 PWM modes. To select a value, select the CPU Fan Start PWM option and ente r a decimal number between 0 00 and 127. The temperature range is specified below.
PWM Minimum Mode: 0  PWM Maximum Mode: 127
Slope PWM [0.5 PWM]
The Slope PWM option can only be set if the CPU FAN Mode Setting option is set to Automatic mode. Use the Slope PWM option to select the linear rate at which the PWM
mode increases with respect to an increase in temperature. A list of available options is shown below:
0.125 PWM 0.25 PWM 0.5 PWM 1 PWM 2 PWM 4 PWM 8 PWM 15 PWM
The following system parameters and values are shown. The system parameters that are monitored are:
System Temperatures: The following system temperatures are monitored
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WAFER-945GSE2 3.5" Motherboard
o CPU Te mperature o System Temperature
Fan Speed: The CPU cooling fan speed is monitored.
o CPU Fa n Speed
Voltages: The following system voltages are monitored
o CPU C ore o +1.05V o +3.30V o +5.00V o +12.0 V o +1.5V o +1.8V o 5VSB o VBAT

5.3.5 Power Configuration

The Power Configuration menu (BIOS Menu 8) configures the Advanced Configuration and Power Interface (ACPI) and Power Management (APM) options.
BIOS SETUP UTILITY
Advanced
Select AT/ATX Power [BY HARDWARE]
Auto Power Button Status [Enabled]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
Default set AUTO is detect power supply status.
If set AT Power, Power State will Auto set Power On.

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
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BIOS Menu 8: Power Configuration
WAFER-945GSE2 3.5" Motherboard
Select AT/ATX Power [By HARDWARE]
Sets the behavior of the power.
AT Power ATX Power BY HARDWARE D
When the Select AT/ATX Power option is set to ATX Power, the following sub-menus appear.
ACPI Configuration APM Configuration
EFAULT
5.3.5.1 ACPI configuration
The ACPI Configuration menu (BIOS Menu 9) configures the Advanced Configuration and Power Interface (ACPI).
BIOS SETUP UTILITY
Advanced
ACPI Settings
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Suspend mode [S1 (POS)]
Select the ACPI state used for System Suspend.

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 9: ACPI Configuration
Suspend mode [S1 (POS )]
Use the Suspend mode BIOS option to specify the sleep state the system enters when it is not being used.
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WAFER-945GSE2 3.5" Motherboard
S1 (POS) DEFAULT
S3 (STR)
System appears off. The CPU is stopped; RAM is refreshed; the system is running in a low power mode.
System appears off. The CPU has no power; RAM is in slow refresh; the power supply is in a reduced power mode.
5.3.5.2 APM Configuration
The APM Configuration menu (BIOS Menu 10) allows the advanced power management options to be configured.
BIOS SETUP UTILITY
Advanced
APM Configuration
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Restore on AC Power Loss [Last State]
Power Button Mode [On/Off]
Advanced Resume Event Controls
Resume On Keyboard/Mouse [Disabled] Resume On Ring [Disabled] Resume On PCI-Express WAKE# [Enabled] Resume On RTC Alarm [Disabled]
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Options
Power Off Power On Last State

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
BIOS Menu 10: Advanced Power Management Configuration
Restore on AC Power Loss [Last State]
Use the Restore on AC Power Loss BIOS option to specify what state the system returns to if there is a sudden loss of power to the system.
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Power Off
Power On
Last State D
The system remains turned off The system turns on
EFAULT
The system returns to its previous state. If it was on, it turns itself on. If it was off, it remains off.
WAFER-945GSE2 3.5" Motherboard
Power Button Mode [On/Off]
Use the Power Button Mode BIOS to specify how the power button functions.
On/Off D
Suspend
Resume on Key board/Mouse [Disabled]
Use the Resume on Keyboard/Mouse BIOS option to enable activity on either the keyboard or mouse to rouse the system from a suspend or standby state. That is, the system is roused when the mouse is moved or a button on the keyboard is pressed.
Disabled DEFAULT
Enabled
Resume on Ring [Disabled]
EFAULT
When the power button is pressed the system goes into
Wake event generated by activity on the keyboard or
When the power button is pressed the system is either turned on or off
suspend mode
Wake event not generated by activity on the keyboard or mouse
mouse
Use the Resume on Ring BIOS option to enable activity on the RI (ring in) modem line to rouse the system from a suspend or standby state. That is, the system will be roused by an incoming call on a modem.
Disabled D
Enabled
Resume on PCI-Express WAKE# [Enabled]
Use the Resume PCI-Express WAKE# BIOS option to enable activity on the PCI-Express WAKE# signal to rouse the system from a suspend or standby state.
Disabled
EFAULT
Wake event generated by an incoming call
Wake event not generated by PCI-Express WAKE#
Wake event not generated by an incoming call
signal activity
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WAFER-945GSE2 3.5" Motherboard
Enabled D
Resume On RTC Alarm [Disabled]
Use the Resume On RTC Alarm option to specify the time the system should be roused from a suspended state.
Disabled D
Enabled
EFAULT
EFAULT
If selected, the following appears with values that
Wake event generated by PCI-Express WAKE# signal activity
The real time clock (RTC) cannot generate a wake event
can be selected: RTC Alarm Date (Days) System Time After setting the alarm, the computer turns itself on
from a suspend state when the alarm goes off.

5.3.6 Remote Access Configuration

Use the Remote Access Configuration menu (BIOS Menu 11) to configure remote access parameters. The Remote Access Configuration is an AMIBIOS feature and allows a remote host running a terminal program to display and configure the BIOS settings.
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WAFER-945GSE2 3.5" Motherboard
BIOS SETUP UTILITY
Advanced
Configure Remote Access type and parameters
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Remote Access [Disabled]
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 11: Remote Access Configuration
Remote Access [Disabled]
Select Remote Access type.

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
Use the Remote Access option to enable or disable access to the remote functionalities of the system.
Disabled D
Enabled
Serial port number [COM1]
Use the Serial port number option to select the serial port used for remote access.
EFAULT
Remote access configuration options shown below
Remote access is disabled.
appear: Serial port number Serial Port Mode Redirection after BIOS POST Terminal Type These configuration options are discussed below.
 
COM1 D
COM2
EFAULT
System is remotely accessed through COM2
System is remotely accessed through COM1
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NOTE: Make sure the selected COM port is enabled through the Super I/O configuration
menu.
Base Address, IRQ [3F8h,4]
The Base Address, IRQ option cannot be configured and only shows the interrupt address of the serial port listed above.
Serial Port Mode [115200 8,n,1]
Use the Serial Port Mode option to select baud rate through which the console redirection is made. The following configuration options are available
WAFER-945GSE2 3.5" Motherboard
115200 8,n,1 D 57600 8,n,1 38400 8,n,1 19200 8,n,1 09600 8,n,1
EFAULT
NOTE:
Identical baud rate setting must be set on the host (a management computer running a terminal software) and the slave
Redirection After BIOS POST [Always]
Use the Redirection After BIOS POST option to specify when console redirection should occur.
Disabled
The console is not redirected after POST
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Boot Loader
Always D
Redirection is active during POST and during Boot
Loader
EFAULT
Redirection is always active (Some OSes may not work if set to Always)
WAFER-945GSE2 3.5" Motherboard
Terminal Type [ANSI]
Use the Terminal Type BIOS option to specify the remote terminal type.
ANSI D
VT100
VT-UTF8
EFAULT
The target terminal type is VT100 The target terminal type is VT-UTF8
The target terminal type is ANSI

5.3.7 USB Configuration

Use the USB Configuration menu (BIOS Menu 12) to read USB configuration information and configure the USB settings.
BIOS SETUP UTILITY
Main Advanced PCIPnP Boot Security Chipset Exit
USB Configuration
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Module Version – 2.24.3-13.4
USB Devices Enabled: None
USB Functions [Enabled]
USB 2.0 Controller [Enabled] Legacy USB Support [Enabled] USB 2.0 Controller Mode [HiSpeed]
Options
Disabled Enabled

Select Screen
Select Item + - Change Option F1 General Help F10 Save and Exit ESC Exit
v02.61 ©Copyright 1985-2006, American Megatrends, Inc.
BIOS Menu 12: USB Configuration
USB Functions [Enabled]
Use the USB Functions option to enable or disable the USB controllers.
Disabled
Enabled DEFAULT
USB 2.0 Controller [Enabled]
The USB 2.0 Controller BIOS option enables or disables the USB 2.0 controller
USB controllers are enabled USB controllers are disabled
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